IVF0018079.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0018079.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr11: 6605355 .. 6606102 (-)
Sequence length	748
RNA-Seq Expression	IVF0018079.1
Synteny	IVF0018079.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCATTATCCTTTTTGGCTCTCCATTATTATTGATTCTTTTAGCTCTTGAGAAATTATGTTCAAAGTTGGGAGCCTTGGGATAGCTCTTATTATGATTCTAATGGCAATCCCCAACTTTGCTATTTTTGCCGAAAGTAGAATGCTCCGATCAGAAGCCGAGGGTGACGGTGTTAAGGAACATGATGTAGATGAAAAGCCAAAGAGACTAATACCACAGCCGAAAGATTCGAGCAGTAGTGGCAATCGAGTTGTTACGTTGGCTTCAGGACCAAGCAGGAAGGGTGGCGGCCATTAGTCAGAAATGTTATATACCATGTTGATTTTGGCGGAGAATTTGTTGCTTTAATTTTTTTCTTTTTTTCTTTTTTCTTATTGGGATTGTGTGCATGACTTAGAAAAAATTGTTCTCCTCTTTGTTTTCATTCTATTTTGTTATCTTCATAGGTCTCACTTCGTTTGTTAATCACGAGCGGTCGGTCTTAAGTGTTAATCTTTATTTAATTTTATTTTTTATTTGAAACTCGGCTCATTAGGTTTTGCTCAATAATCAAAAGTTTTGAATTCTATGATTATAATCAATATAAAAACATTCATAAAATATTGCAAAAATGACAAAACTTGATAAACTGATTGAATAAACTCGAAAAACGTGTCTTCAACTCATAGAAAATGTCCCAAAAGTTCATTCAAAATGCAAATAGACCATTGATAATATGCTACTGATGATATATAGAACTTATAACTG

mRNA sequence

AAACCATTATCCTTTTTGGCTCTCCATTATTATTGATTCTTTTAGCTCTTGAGAAATTATGTTCAAAGTTGGGAGCCTTGGGATAGCTCTTATTATGATTCTAATGGCAATCCCCAACTTTGCTATTTTTGCCGAAAGTAGAATGCTCCGATCAGAAGCCGAGGGTGACGGTGTTAAGGAACATGATGTAGATGAAAAGCCAAAGAGACTAATACCACAGCCGAAAGATTCGAGCAGTAGTGGCAATCGAGTTGTTACGTTGGCTTCAGGACCAAGCAGGAAGGGTGGCGGCCATTAGTCAGAAATGTTATATACCATGTTGATTTTGGCGGAGAATTTGTTGCTTTAATTTTTTTCTTTTTTTCTTTTTTCTTATTGGGATTGTGTGCATGACTTAGAAAAAATTGTTCTCCTCTTTGTTTTCATTCTATTTTGTTATCTTCATAGGTCTCACTTCGTTTGTTAATCACGAGCGGTCGGTCTTAAGTGTTAATCTTTATTTAATTTTATTTTTTATTTGAAACTCGGCTCATTAGGTTTTGCTCAATAATCAAAAGTTTTGAATTCTATGATTATAATCAATATAAAAACATTCATAAAATATTGCAAAAATGACAAAACTTGATAAACTGATTGAATAAACTCGAAAAACGTGTCTTCAACTCATAGAAAATGTCCCAAAAGTTCATTCAAAATGCAAATAGACCATTGATAATATGCTACTGATGATATATAGAACTTATAACTG

Coding sequence (CDS)

ATGTTCAAAGTTGGGAGCCTTGGGATAGCTCTTATTATGATTCTAATGGCAATCCCCAACTTTGCTATTTTTGCCGAAAGTAGAATGCTCCGATCAGAAGCCGAGGGTGACGGTGTTAAGGAACATGATGTAGATGAAAAGCCAAAGAGACTAATACCACAGCCGAAAGATTCGAGCAGTAGTGGCAATCGAGTTGTTACGTTGGCTTCAGGACCAAGCAGGAAGGGTGGCGGCCATTAG

Protein sequence

MFKVGSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSSSGNRVVTLASGPSRKGGGH

Homology

[Close]

BLAST of IVF0018079.1 vs. ExPASy TrEMBL
Match: A0A5D3BTU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38G00040 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.1e-33
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MFKVGSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSS 60
          MFKVGSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSS
Sbjct: 1  MFKVGSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSS 60

Query: 61 SGNRVVTLASGPSRKGGGH 80
          SGNRVVTLASGPSRKGGGH
Sbjct: 61 SGNRVVTLASGPSRKGGGH 79

[Close]

BLAST of IVF0018079.1 vs. ExPASy TrEMBL
Match: A0A5A7TI98 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G001340 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.8e-32
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MFKVGSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSS 60
          MFKV SLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSS
Sbjct: 1  MFKVRSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSS 60

Query: 61 SGNRVVTLASGPSRKGGGH 80
          SGNRVVTLASGPSRKGGGH
Sbjct: 61 SGNRVVTLASGPSRKGGGH 79

[Close]

BLAST of IVF0018079.1 vs. NCBI nr
Match: TYK01636.1 (uncharacterized protein E5676_scaffold38G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 151 bits (381), Expect = 7.57e-46
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MFKVGSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSS 60
          MFKVGSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSS
Sbjct: 1  MFKVGSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSS 60

Query: 61 SGNRVVTLASGPSRKGGGH 79
          SGNRVVTLASGPSRKGGGH
Sbjct: 61 SGNRVVTLASGPSRKGGGH 79

[Close]

BLAST of IVF0018079.1 vs. NCBI nr
Match: KAA0043050.1 (uncharacterized protein E6C27_scaffold75G001340 [Cucumis melo var. makuwa])

HSP 1 Score: 148 bits (373), Expect = 1.26e-44
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MFKVGSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSS 60
          MFKV SLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSS
Sbjct: 1  MFKVRSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSS 60

Query: 61 SGNRVVTLASGPSRKGGGH 79
          SGNRVVTLASGPSRKGGGH
Sbjct: 61 SGNRVVTLASGPSRKGGGH 79

[Close]

BLAST of IVF0018079.1 vs. NCBI nr
Match: KAE8652345.1 (hypothetical protein Csa_022541, partial [Cucumis sativus])

HSP 1 Score: 125 bits (313), Expect = 3.33e-35
Identity = 69/80 (86.25%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 1   MFKVGSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVD-EKPKRLIPQPKDSS 60
           MFK+ S GIALIMILMAIPNFAIFA SRMLRSEAE   VKEHDVD EKPKRL PQPKDSS
Sbjct: 21  MFKLRSFGIALIMILMAIPNFAIFANSRMLRSEAERGSVKEHDVDQEKPKRLTPQPKDSS 80

Query: 61  SSGNRVVTLASGPSRKGGGH 79
           SSG+RV TLASGPSRKGGGH
Sbjct: 81  SSGDRVFTLASGPSRKGGGH 100

The following BLAST results are available for this feature:

BLAST of IVF0018079.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018079.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BTU1	2.1e-33	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TI98	1.8e-32	98.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0018079.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01636.1	7.57e-46	100.00	uncharacterized protein E5676_scaffold38G00040 [Cucumis melo var. makuwa]	[more]
KAA0043050.1	1.26e-44	98.73	uncharacterized protein E6C27_scaffold75G001340 [Cucumis melo var. makuwa]	[more]
KAE8652345.1	3.33e-35	86.25	hypothetical protein Csa_022541, partial [Cucumis sativus]	[more]

BLAST of IVF0018079.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..79

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0018079	IVF0018079	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0018079.1-exon	IVF0018079.1-exon-chr11:6605355..6606102	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0018079.1-three_prime_utr	IVF0018079.1-three_prime_utr-chr11:6605355..6605804	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0018079.1-cds	IVF0018079.1-cds-chr11:6605805..6606044	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0018079.1-five_prime_utr	IVF0018079.1-five_prime_utr-chr11:6606045..6606102	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0018079.1	IVF0018079.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane