IVF0018040.2 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0018040.2
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	30S ribosomal protein S12, chloroplastic
Location	tig00001495: 23430 .. 23861 (+)
Sequence length	432
RNA-Seq Expression	IVF0018040.2
Synteny	IVF0018040.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

mRNA sequence

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

Coding sequence (CDS)

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

Protein sequence

MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Homology

[Close]

BLAST of IVF0018040.2 vs. ExPASy Swiss-Prot
Match: A4GYN8 (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.3e-43
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 48  TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLV 107
           T + SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLV
Sbjct: 35  TRVYSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLV 94

Query: 108 RGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 141
           RGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 95  RGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 127

[Close]

BLAST of IVF0018040.2 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.2e-38
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 55  KGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 114
           +G  +  +STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD
Sbjct: 31  RGTCTRVYSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 90

Query: 115 LPGVRYHIVRGTLDAVGVKDRQQGRS 141
           LPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 91  LPGVRYHIVRGTLDAVGVKDRQQGRS 116

[Close]

BLAST of IVF0018040.2 vs. ExPASy Swiss-Prot
Match: Q1KXY0 (30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRSSAL 144
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of IVF0018040.2 vs. ExPASy Swiss-Prot
Match: Q332V3 (30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRSSAL 144
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of IVF0018040.2 vs. ExPASy Swiss-Prot
Match: Q0G9J5 (30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRSSAL 144
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of IVF0018040.2 vs. ExPASy TrEMBL
Match: A0A6J1F0L1 (uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC111438394 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.1e-71
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60
           MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSV
Sbjct: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120
           NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120

Query: 121 HIVRGTLDAVGVKDRQQGRSSAL 144
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]

BLAST of IVF0018040.2 vs. ExPASy TrEMBL
Match: A0A3S3NSS0 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02749900 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.2e-63
Identity = 132/142 (92.96%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 146

[Close]

BLAST of IVF0018040.2 vs. ExPASy TrEMBL
Match: A0A6A5N1Q8 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 7.4e-61
Identity = 128/142 (90.14%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKIS +VL SGSKGDLSVN
Sbjct: 80  HENVTKLVLVTLRDGVEEGGRFSNEEKDPMTSKELNKESYEVKISCSVLLSGSKGDLSVN 139

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEH VVLVRGG VKDLPGVRYH
Sbjct: 140 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHFVVLVRGG-VKDLPGVRYH 199

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTL A+GVKDRQQGRSSAL
Sbjct: 200 IVRGTLYAIGVKDRQQGRSSAL 220

[Close]

BLAST of IVF0018040.2 vs. ExPASy TrEMBL
Match: A0A443Q5I9 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02780500 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 9.6e-61
Identity = 127/142 (89.44%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYE         S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYE---------SDSKGDLSVN 67

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 140

[Close]

BLAST of IVF0018040.2 vs. ExPASy TrEMBL
Match: U5CU38 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s02071p00004290 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 6.9e-59
Identity = 124/142 (87.32%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +EN TELV VT RDG+EEGRRFS+EEKDP+TSKELNEEPYE         S SKGDLSVN
Sbjct: 8   HENATELVLVTPRDGVEEGRRFSSEEKDPITSKELNEEPYE---------SDSKGDLSVN 67

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 140

[Close]

BLAST of IVF0018040.2 vs. NCBI nr
Match: XP_022932068.1 (uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 uncharacterized protein LOC111783982 [Cucurbita pepo subsp. pepo] >XP_023520572.1 uncharacterized protein LOC111783984 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278 bits (710), Expect = 5.35e-94
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60
           MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSV
Sbjct: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120
           NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120

Query: 121 HIVRGTLDAVGVKDRQQGRSSAL 143
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]

BLAST of IVF0018040.2 vs. NCBI nr
Match: XP_038896566.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 270 bits (691), Expect = 4.23e-91
Identity = 138/143 (96.50%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60
           MNENVT+LVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV
Sbjct: 1   MNENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60

Query: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120
           NFSTITPK  NSALRKVARVRLTSGFEI AYIPGIGHNLQEHS VLVRGGRVKDLPGVRY
Sbjct: 61  NFSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRY 120

Query: 121 HIVRGTLDAVGVKDRQQGRSSAL 143
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]

BLAST of IVF0018040.2 vs. NCBI nr
Match: XP_038902483.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 266 bits (681), Expect = 1.42e-89
Identity = 137/143 (95.80%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60
           MNENVTELV VTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLS+
Sbjct: 1   MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSI 60

Query: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120
           NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE+ VVLVRG RVKDLP VRY
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEYFVVLVRGERVKDLPNVRY 120

Query: 121 HIVRGTLDAVGVKDRQQGRSSAL 143
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]

BLAST of IVF0018040.2 vs. NCBI nr
Match: RWR98012.1 (LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 252 bits (643), Expect = 9.76e-84
Identity = 132/142 (92.96%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 143
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 146

[Close]

BLAST of IVF0018040.2 vs. NCBI nr
Match: KAF8091090.1 (hypothetical protein N665_0454s0031, partial [Sinapis alba])

HSP 1 Score: 244 bits (624), Expect = 5.88e-81
Identity = 126/142 (88.73%), Postives = 131/142 (92.25%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVTE + VTLRDG+EEGRRF+NEE+DPMTSKELNEEPYE         SGSKGDLSVN
Sbjct: 6   HENVTEFILVTLRDGVEEGRRFANEERDPMTSKELNEEPYE---------SGSKGDLSVN 65

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH
Sbjct: 66  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 125

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 143
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 126 IVRGTLDAVGVKDRQQGRSSAL 138

[Close]

BLAST of IVF0018040.2 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 156.8 bits (395), Expect = 1.3e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRS 141
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]

BLAST of IVF0018040.2 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 156.8 bits (395), Expect = 1.3e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRS 141
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]

BLAST of IVF0018040.2 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 156.8 bits (395), Expect = 1.3e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRS 141
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]

BLAST of IVF0018040.2 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 104.8 bits (260), Expect = 6.0e-23
Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 38  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGH 97
           EE      +R +     K  +    ST TPKKPNSA RK+A+VRL++  +I A+IPG GH
Sbjct: 13  EEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGH 72

Query: 98  NLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 141
           N QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Sbjct: 73  NSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRS 115

[Close]

BLAST of IVF0018040.2 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 104.8 bits (260), Expect = 6.0e-23
Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 38  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGH 97
           EE      +R +     K  +    ST TPKKPNSA RK+A+VRL++  +I A+IPG GH
Sbjct: 13  EEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGH 72

Query: 98  NLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 141
           N QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Sbjct: 73  NSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRS 115

The following BLAST results are available for this feature:

BLAST of IVF0018040.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4GYN8	1.3e-43	95.70	30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps...	[more]
A4QJX7	2.2e-38	91.86	30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]
Q1KXY0	2.9e-38	98.75	30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A...	[more]
Q332V3	2.9e-38	98.75	30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE...	[more]
Q0G9J5	2.9e-38	98.75	30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=r...	[more]

BLAST of IVF0018040.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0L1	2.1e-71	99.30	uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]
A0A3S3NSS0	1.2e-63	92.96	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]
A0A6A5N1Q8	7.4e-61	90.14	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1	[more]
A0A443Q5I9	9.6e-61	89.44	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]
U5CU38	6.9e-59	87.32	Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s02071p00004290...	[more]

BLAST of IVF0018040.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932068.1	5.35e-94	99.30	uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 unchar...	[more]
XP_038896566.1	4.23e-91	96.50	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]
XP_038902483.1	1.42e-89	95.80	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]
RWR98012.1	9.76e-84	92.96	LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micran...	[more]
KAF8091090.1	5.88e-81	88.73	hypothetical protein N665_0454s0031, partial [Sinapis alba]	[more]

BLAST of IVF0018040.2 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00065.1	1.3e-38	100.00	ribosomal protein S12A	[more]
ATCG01230.1	1.3e-38	100.00	ribosomal protein S12B	[more]
ATCG00905.1	1.3e-38	100.00	ribosomal protein S12C	[more]
AT2G07675.1	6.0e-23	51.46	Ribosomal protein S12/S23 family protein	[more]
ATMG00980.1	6.0e-23	51.46	Ribosomal protein S12/S23 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PRINTS	PR01034	RIBOSOMALS12	coord: 102..119 score: 88.58 coord: 119..135 score: 64.3 coord: 135..143 score: 32.37 coord: 67..82 score: 91.32 coord: 83..102 score: 75.14
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 58..138 e-value: 5.1E-30 score: 103.4
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 33..142
IPR006032	Ribosomal protein S12/S23	PROSITE	PS00055	RIBOSOMAL_S12	coord: 68..75
None	No IPR available	GENE3D	2.40.50.140		coord: 11..142 e-value: 2.2E-46 score: 158.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..35
None	No IPR available	PANTHER	PTHR11652:SF52	30S RIBOSOMAL PROTEIN S12-B	coord: 33..142
IPR005679	Ribosomal protein S12, bacterial-type	TIGRFAM	TIGR00981	TIGR00981	coord: 52..140 e-value: 1.9E-46 score: 154.9
IPR005679	Ribosomal protein S12, bacterial-type	CDD	cd03368	Ribosomal_S12	coord: 64..135 e-value: 8.57105E-54 score: 163.073
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 60..140

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0018040	IVF0018040	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0018040.2-exon	IVF0018040.2-exon-tig00001495:23430..23861	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0018040.2-cds	IVF0018040.2-cds-tig00001495:23430..23861	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0018040.2	IVF0018040.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome