IVF0017369.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0017369.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr09: 845952 .. 846263 (-)
Sequence length	312
RNA-Seq Expression	IVF0017369.1
Synteny	IVF0017369.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATGTATACAACAGGTGATAAAAATAAGTGTGAAATACATTTTTTTATTGACAAATATACGGTGATTCCTCTCAATCCAAATATGCCAAAAGTAGGCTTCGATGATGAAGGTCCACATAATCGCTTTCTCATTCTTAAACGGAAGGCCAATAACAAGCATATTCAGAAGGATGAGAGGGGCATTAGAGAAAACCATTTCATAGTTGAAGTAGGACAAAATTCTTATCCAACAAGATTAGGCAAAATCACAGGAACACCAAATGACAACGCCAGATCCATAGAGTCCTCCATCCAAATAGAACATTGA

mRNA sequence

ATGGTGATGTATACAACAGGTGATAAAAATAAGTGTGAAATACATTTTTTTATTGACAAATATACGGTGATTCCTCTCAATCCAAATATGCCAAAAGTAGGCTTCGATGATGAAGGTCCACATAATCGCTTTCTCATTCTTAAACGGAAGGCCAATAACAAGCATATTCAGAAGGATGAGAGGGGCATTAGAGAAAACCATTTCATAGTTGAAGTAGGACAAAATTCTTATCCAACAAGATTAGGCAAAATCACAGGAACACCAAATGACAACGCCAGATCCATAGAGTCCTCCATCCAAATAGAACATTGA

Coding sequence (CDS)

ATGGTGATGTATACAACAGGTGATAAAAATAAGTGTGAAATACATTTTTTTATTGACAAATATACGGTGATTCCTCTCAATCCAAATATGCCAAAAGTAGGCTTCGATGATGAAGGTCCACATAATCGCTTTCTCATTCTTAAACGGAAGGCCAATAACAAGCATATTCAGAAGGATGAGAGGGGCATTAGAGAAAACCATTTCATAGTTGAAGTAGGACAAAATTCTTATCCAACAAGATTAGGCAAAATCACAGGAACACCAAATGACAACGCCAGATCCATAGAGTCCTCCATCCAAATAGAACATTGA

Protein sequence

MVMYTTGDKNKCEIHFFIDKYTVIPLNPNMPKVGFDDEGPHNRFLILKRKANNKHIQKDERGIRENHFIVEVGQNSYPTRLGKITGTPNDNARSIESSIQIEH

Homology

[Close]

BLAST of IVF0017369.1 vs. ExPASy TrEMBL
Match: Q5DMW6 (Uncharacterized protein OS=Cucumis melo OX=3656 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.2e-52
Identity = 101/103 (98.06%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MVMYTTGDKNKCEIHFFIDKYTVIPLNPNMPKVGFDDEGPHNRFLILKRKANNKHIQKDE 60
           MVMYTTGDKNKCEIHFFIDKYTVIPLNPN PKVGFDDEGPHNR LILKRKANNKHIQKDE
Sbjct: 1   MVMYTTGDKNKCEIHFFIDKYTVIPLNPNTPKVGFDDEGPHNRILILKRKANNKHIQKDE 60

Query: 61  RGIRENHFIVEVGQNSYPTRLGKITGTPNDNARSIESSIQIEH 104
           RGIRENHFIVEVGQNSYPTRLGKITGTPNDNARSIESSIQIEH
Sbjct: 61  RGIRENHFIVEVGQNSYPTRLGKITGTPNDNARSIESSIQIEH 103

[Close]

BLAST of IVF0017369.1 vs. NCBI nr
Match: AAU04757.1 (hypothetical protein [Cucumis melo])

HSP 1 Score: 216 bits (551), Expect = 4.92e-71
Identity = 101/103 (98.06%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MVMYTTGDKNKCEIHFFIDKYTVIPLNPNMPKVGFDDEGPHNRFLILKRKANNKHIQKDE 60
           MVMYTTGDKNKCEIHFFIDKYTVIPLNPN PKVGFDDEGPHNR LILKRKANNKHIQKDE
Sbjct: 1   MVMYTTGDKNKCEIHFFIDKYTVIPLNPNTPKVGFDDEGPHNRILILKRKANNKHIQKDE 60

Query: 61  RGIRENHFIVEVGQNSYPTRLGKITGTPNDNARSIESSIQIEH 103
           RGIRENHFIVEVGQNSYPTRLGKITGTPNDNARSIESSIQIEH
Sbjct: 61  RGIRENHFIVEVGQNSYPTRLGKITGTPNDNARSIESSIQIEH 103

The following BLAST results are available for this feature:

BLAST of IVF0017369.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017369.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q5DMW6	1.2e-52	98.06	Uncharacterized protein OS=Cucumis melo OX=3656 PE=4 SV=1	[more]

BLAST of IVF0017369.1 vs. NCBI nr


Match Name	E-value	Identity	Description
AAU04757.1	4.92e-71	98.06	hypothetical protein [Cucumis melo]	[more]

BLAST of IVF0017369.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..103

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0017369	IVF0017369	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0017369.1-exon	IVF0017369.1-exon-chr09:845952..846263	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0017369.1-cds	IVF0017369.1-cds-chr09:845952..846263	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0017369.1	IVF0017369.1-protein	polypeptide