IVF0016031.2 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0016031.2
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA/RNA polymerases superfamily protein
Location	chr05: 18662041 .. 18663880 (-)
Sequence length	360
RNA-Seq Expression	IVF0016031.2
Synteny	IVF0016031.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCAAAATCGACCAGGTAAAGGAAGAAGTGGAAGATTTGTGTAAGGGGTGTCTAATAGAGGAAATTTTAAGTCTCAGTACAGTGGTTCTTCTTTCTCTAAATCAGGATCAGGTGGAGGAGTTTAGAGATCTAGCGGTTTTAGTCATCCTATATCTTCTACAAAAGGTTCTTATGTTGCTCGATCAGATAGGGTTGTATCAGAGTCTTGCAAGAGCAGTGTATGTTATAACTGTGGTCAGCCAGGACATTATCGTAGAGACTGTCCACATTTGATACTGGTGGGTAATACTATTATGAAAACCACTTCTCAAATAGTAAGCCAGTAGCCAAGAACCACAAGAACAAGTGGTGAAGGCTCTAGTAAAGGAAAACAGAGAGGACCAGTAGGTCGCTCTCTTCAAGAAGGGAAAGTTTTTGCAATGACATAAAGGAGGCAGCAGATACACAAATGTTGTGACTAGTACGTTATCTATATTTGATAAATCTGCACATGTCTTAATGGATCCTGGTGCAACATATTCTTCTGTCTCTATTACGTTTACAATTGGGGTTGGTAAAAAGTTAGAAAGTCTGACTAAGGAATTGTTGATAAGTACACCTGTGTATCGAAATTGTATTTTCATATTGATGGTGAAACTTTAGGAGTGGATTTGATTTCGTTAAACATTCAGGAGTTTAATGTTATCTTGGGAATGGATCTTCTATCCAATCACTATGTCTCCTTAAATTGTCATCAGAAAGAGATTGTTTTTAAACATCTAGGGATTGTTTTTAAACATCTAGGGAAGAATGAAATCATTTTCCACGGTGATAGAAAATACTTTCCACCTGTATGATCTCTGCTTTAAAGGCCAGTAAATTATTGAGGAAGGGTTGTACAACCTACCTAGCACATGTGATGGATACACAGGTTAGTAAGCTGAAGCTTAAAGATATACTAGTGGTAAGAAAATTTCTAGATGTTTTTCCTGAAGAGTTATCAGGACTACCACCCGATAGAGAGATTGAATTCTTAATTGATTTAGTGCCTGGAACAGCACTCATTTCACAAGCTCTCTATAGAATGGCACTGATGGAACTAAGAGAACTAAAATTACAGTTGCAGGAATTGGTGGATAAGGGCTTTATCTGACCTAGTGCATCTCCGTGGGGTACACCAGTGTTGTTTGTTAAAAAGAAGGATGGTATATTGAGGTTAGGTATTGACTACTGACAGTTAAATAAGGTAACAATGCATAACAAATATCATTTGCTCCGAATAGATGATTTATTTGATCAGCTTCGTGGTGCCTCTGTATTCTCTAAGATTGACTTGAGATCAAGTTATCATCAATTAAAATTTAAAGAGTCAAATATCCTGAAAACAACTTTTCGAACGAGATATGGGCATTATGAATTCTTGGTAATGCTCTTTGGGTTAACTAATGCCCCTACAGCCTTCATGGACTTGATGAATCTGGTGTTTCATCCATACTTAGATCAGTTTGTTATTATGTTCATAGACGACATATTGGTTTATTCTAGGAGTAAGGAAAAGCATGCTGAACACCTCAGAATAGTGTGGCAGACACTGCGGGACCGAGAGTTGTATGCTAAATTCAGTAAGTGTGAATTCTGGTTGGATCGGGTAATATATTTGGGTCATGTGGTTTCAGTGGAAGGCATTTGTGTCGATCCTCAGAAAATTGAAGCAGTAAATAAGTGGGAAAGACCTACCTCCATCATTGAGATTCGAAGTTTTCTTAGTTTAGCGAGGTATTATCGTCGATTTGTGGAAGGGTTTTCGAAATTGGCACTTTCGTTAACCAACCTAACCAAGAAGAATGTAAAGTTTGA

mRNA sequence

ATGCATCAAAATCGACCAGGTAAAGGAAGAAGTGGAAGATTTAGATCTAGCGGTTTTAGTCATCCTATATCTTCTACAAAAGGTTCTTATGTTGCTCGATCAGATAGGGTTGTATCAGAGTCTTGCAAGAGCAGTGTATGTTATAACTGTGGTCAGCCAGGACATTATCGTAGAGACTGTCCACATTTGATACTGCCAAGAACCACAAGAACAAGTGGTGAAGGCTCTAGTAAAGGAAAACAGAGAGGACCAGTAGGTCGCTCTCTTCAAGAAGGGAAAGTATTATCGTCGATTTGTGGAAGGGTTTTCGAAATTGGCACTTTCGTTAACCAACCTAACCAAGAAGAATGTAAAGTTTGA

Coding sequence (CDS)

ATGCATCAAAATCGACCAGGTAAAGGAAGAAGTGGAAGATTTAGATCTAGCGGTTTTAGTCATCCTATATCTTCTACAAAAGGTTCTTATGTTGCTCGATCAGATAGGGTTGTATCAGAGTCTTGCAAGAGCAGTGTATGTTATAACTGTGGTCAGCCAGGACATTATCGTAGAGACTGTCCACATTTGATACTGCCAAGAACCACAAGAACAAGTGGTGAAGGCTCTAGTAAAGGAAAACAGAGAGGACCAGTAGGTCGCTCTCTTCAAGAAGGGAAAGTATTATCGTCGATTTGTGGAAGGGTTTTCGAAATTGGCACTTTCGTTAACCAACCTAACCAAGAAGAATGTAAAGTTTGA

Protein sequence

MHQNRPGKGRSGRFRSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLILPRTTRTSGEGSSKGKQRGPVGRSLQEGKVLSSICGRVFEIGTFVNQPNQEECKV

Homology

[Close]

BLAST of IVF0016031.2 vs. ExPASy TrEMBL
Match: A0A5A7TL70 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00030 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.6e-29
Identity = 75/112 (66.96%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 1   MHQNRPGKGRSGRFRSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDC 60
           MH+NR G+G     RSSG SHPISST GS++ARSDRVVSES KSSVCYNC QPGHYRRDC
Sbjct: 246 MHRNRQGRGAQ---RSSGSSHPISSTGGSHIARSDRVVSESGKSSVCYNCDQPGHYRRDC 305

Query: 61  PHLI----------------LPRTTRTSGEGSSKGKQRGPVGRSLQEGKVLS 97
           PHLI                 PRTTRTSGEGSS GKQ+GPVGRS  EGKV +
Sbjct: 306 PHLIPGGNTILKTTSHTVSQQPRTTRTSGEGSSGGKQKGPVGRSRPEGKVFA 354

[Close]

BLAST of IVF0016031.2 vs. ExPASy TrEMBL
Match: A0A5D3DI38 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00610 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.6e-29
Identity = 75/112 (66.96%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 1   MHQNRPGKGRSGRFRSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDC 60
           MH+NR G+G     RSSG SHPISST GS++ARSDRVVSES KSSVCYNC QPGHYRRDC
Sbjct: 246 MHRNRQGRGAQ---RSSGSSHPISSTGGSHIARSDRVVSESGKSSVCYNCDQPGHYRRDC 305

Query: 61  PHLI----------------LPRTTRTSGEGSSKGKQRGPVGRSLQEGKVLS 97
           PHLI                 PRTTRTSGEGSS GKQ+GPVGRS  EGKV +
Sbjct: 306 PHLIPGGNTILKTTSHTVSQQPRTTRTSGEGSSGGKQKGPVGRSRPEGKVFA 354

[Close]

BLAST of IVF0016031.2 vs. ExPASy TrEMBL
Match: A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.7e-29
Identity = 80/141 (56.74%), Postives = 85/141 (60.28%), Query Frame = 0


Query: 1   MHQNRPGKGRSGRF-----------------------------RSSGFSHPISSTKGSYV 60
           MH+NR GK RSGRF                             RSSG SHPISST GS++
Sbjct: 247 MHRNRQGKERSGRFVPGVSSRGNFKSQYNGSSFSKSGSSGGAQRSSGSSHPISSTGGSHI 306

Query: 61  ARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI----------------LPRTTRTSGEG 97
           ARSDRVVSES KSSVCYNCGQPGHYRRDCPHLI                 PR T TSGEG
Sbjct: 307 ARSDRVVSESSKSSVCYNCGQPGHYRRDCPHLIPGGNTILKTTSQTVSQQPRITITSGEG 366

[Close]

BLAST of IVF0016031.2 vs. ExPASy TrEMBL
Match: A0A5A7TFE2 (Putative polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006330 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 6.2e-29
Identity = 81/146 (55.48%), Postives = 86/146 (58.90%), Query Frame = 0


Query: 1   MHQNRPGKGRSGRF-----------------------------RSSGFSHPISSTKGSYV 60
           MHQNR GK RSGRF                             RSSG SHPISS  GS++
Sbjct: 213 MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHI 272

Query: 61  ARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI----------------LPRTTRTSGEG 102
           ARSDRVVSES KSSVCYNCGQP HYRR+CPHLI                 PRTTRTSGEG
Sbjct: 273 ARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTILKTTSQTVSQQPRTTRTSGEG 332

[Close]

BLAST of IVF0016031.2 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.8e-28
Identity = 73/112 (65.18%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 1   MHQNRPGKGRSGRFRSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDC 60
           MH+NR G+G     RSSG SHPISS  GSY+A+SDRVVS+S KSSVCYNCGQPGHYRRDC
Sbjct: 251 MHRNRQGEGAQ---RSSGSSHPISSIGGSYIAQSDRVVSKSGKSSVCYNCGQPGHYRRDC 310

Query: 61  PHLI----------------LPRTTRTSGEGSSKGKQRGPVGRSLQEGKVLS 97
           P+LI                 PRT RTSGEGSS GKQ+GPVGRS QEGKV +
Sbjct: 311 PYLIPGGNTILKTTSQTVSQQPRTMRTSGEGSSGGKQKGPVGRSRQEGKVFA 359

[Close]

BLAST of IVF0016031.2 vs. NCBI nr
Match: KAA0042144.1 (putative polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 136 bits (342), Expect = 9.54e-36
Identity = 81/146 (55.48%), Postives = 86/146 (58.90%), Query Frame = 0


Query: 1   MHQNRPGKGRSGRF-----------------------------RSSGFSHPISSTKGSYV 60
           MHQNR GK RSGRF                             RSSG SHPISS  GS++
Sbjct: 213 MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHI 272

Query: 61  ARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI----------------LPRTTRTSGEG 101
           ARSDRVVSES KSSVCYNCGQP HYRR+CPHLI                 PRTTRTSGEG
Sbjct: 273 ARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTILKTTSQTVSQQPRTTRTSGEG 332

[Close]

BLAST of IVF0016031.2 vs. NCBI nr
Match: KAA0042457.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (348), Expect = 2.72e-35
Identity = 75/112 (66.96%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 1   MHQNRPGKGRSGRFRSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDC 60
           MH+NR G+G     RSSG SHPISST GS++ARSDRVVSES KSSVCYNC QPGHYRRDC
Sbjct: 246 MHRNRQGRGAQ---RSSGSSHPISSTGGSHIARSDRVVSESGKSSVCYNCDQPGHYRRDC 305

Query: 61  PHLI----------------LPRTTRTSGEGSSKGKQRGPVGRSLQEGKVLS 96
           PHLI                 PRTTRTSGEGSS GKQ+GPVGRS  EGKV +
Sbjct: 306 PHLIPGGNTILKTTSHTVSQQPRTTRTSGEGSSGGKQKGPVGRSRPEGKVFA 354

[Close]

BLAST of IVF0016031.2 vs. NCBI nr
Match: TYK22919.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (348), Expect = 2.72e-35
Identity = 75/112 (66.96%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 1   MHQNRPGKGRSGRFRSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDC 60
           MH+NR G+G     RSSG SHPISST GS++ARSDRVVSES KSSVCYNC QPGHYRRDC
Sbjct: 246 MHRNRQGRGAQ---RSSGSSHPISSTGGSHIARSDRVVSESGKSSVCYNCDQPGHYRRDC 305

Query: 61  PHLI----------------LPRTTRTSGEGSSKGKQRGPVGRSLQEGKVLS 96
           PHLI                 PRTTRTSGEGSS GKQ+GPVGRS  EGKV +
Sbjct: 306 PHLIPGGNTILKTTSHTVSQQPRTTRTSGEGSSGGKQKGPVGRSRPEGKVFA 354

[Close]

BLAST of IVF0016031.2 vs. NCBI nr
Match: KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 136 bits (343), Expect = 9.20e-35
Identity = 80/141 (56.74%), Postives = 85/141 (60.28%), Query Frame = 0


Query: 1   MHQNRPGKGRSGRF-----------------------------RSSGFSHPISSTKGSYV 60
           MH+NR GK RSGRF                             RSSG SHPISST GS++
Sbjct: 247 MHRNRQGKERSGRFVPGVSSRGNFKSQYNGSSFSKSGSSGGAQRSSGSSHPISSTGGSHI 306

Query: 61  ARSDRVVSESCKSSVCYNCGQPGHYRRDCPHLI----------------LPRTTRTSGEG 96
           ARSDRVVSES KSSVCYNCGQPGHYRRDCPHLI                 PR T TSGEG
Sbjct: 307 ARSDRVVSESSKSSVCYNCGQPGHYRRDCPHLIPGGNTILKTTSQTVSQQPRITITSGEG 366

[Close]

BLAST of IVF0016031.2 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (339), Expect = 6.72e-34
Identity = 73/112 (65.18%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 1   MHQNRPGKGRSGRFRSSGFSHPISSTKGSYVARSDRVVSESCKSSVCYNCGQPGHYRRDC 60
           MH+NR G+G     RSSG SHPISS  GSY+A+SDRVVS+S KSSVCYNCGQPGHYRRDC
Sbjct: 251 MHRNRQGEGAQ---RSSGSSHPISSIGGSYIAQSDRVVSKSGKSSVCYNCGQPGHYRRDC 310

Query: 61  PHLI----------------LPRTTRTSGEGSSKGKQRGPVGRSLQEGKVLS 96
           P+LI                 PRT RTSGEGSS GKQ+GPVGRS QEGKV +
Sbjct: 311 PYLIPGGNTILKTTSQTVSQQPRTMRTSGEGSSGGKQKGPVGRSRQEGKVFA 359

The following BLAST results are available for this feature:

BLAST of IVF0016031.2 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0016031.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TL70	1.6e-29	66.96	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24...	[more]
A0A5D3DI38	1.6e-29	66.96	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold33...	[more]
A0A5A7UZM6	4.7e-29	56.74	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7TFE2	6.2e-29	55.48	Putative polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3DES5	1.8e-28	65.18	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of IVF0016031.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042144.1	9.54e-36	55.48	putative polyprotein, identical [Cucumis melo var. makuwa]	[more]
KAA0042457.1	2.72e-35	66.96	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK22919.1	2.72e-35	66.96	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0060484.1	9.20e-35	56.74	Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag...	[more]
KAA0035225.1	6.72e-34	65.18	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D...	[more]

BLAST of IVF0016031.2 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 46..62 e-value: 9.0E-6 score: 35.2
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 46..62 e-value: 4.8E-9 score: 35.9
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 47..61 score: 11.680103
None	No IPR available	GENE3D	4.10.60.10		coord: 40..90 e-value: 5.0E-8 score: 35.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..89
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 41..63

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0016031	IVF0016031	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0016031.2-exon	IVF0016031.2-exon-chr05:18662041..18662121	exon
IVF0016031.2-exon	IVF0016031.2-exon-chr05:18663467..18663550	exon
IVF0016031.2-exon	IVF0016031.2-exon-chr05:18663599..18663751	exon
IVF0016031.2-exon	IVF0016031.2-exon-chr05:18663839..18663880	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0016031.2-cds	IVF0016031.2-cds-chr05:18662041..18662121	CDS
IVF0016031.2-cds	IVF0016031.2-cds-chr05:18663467..18663550	CDS
IVF0016031.2-cds	IVF0016031.2-cds-chr05:18663599..18663751	CDS
IVF0016031.2-cds	IVF0016031.2-cds-chr05:18663839..18663880	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0016031.2	IVF0016031.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003824	catalytic activity