IVF0015517.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0015517.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	CACTA en-spm transposon protein
Location	chr04: 22647869 .. 22648156 (-)
Sequence length	288
RNA-Seq Expression	IVF0015517.1
Synteny	IVF0015517.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACACAACACGTCGGGATAGTACTCCCGACGCGCGTTTGACGTCGAATAAGGAAATGTCAGGATATGGAATTTCCAACGCAATGAAAAGCGTTGGCATAAGAGACGTCGGGAGAGGTGTTCCCGATGCCGTGTTGGTCATGCGTTGGGAATTCATCTCCCGACACATTTCTTTCGACGTGCGTCCCGACGCAGTAAACAACGTAGGAAAAAGACATCCCGACATTTTTGTAGCTTCTCCCAACGTCATTGTGCGTCGGGAGTCTCCCGCCTCTTGTAGTGAATAG

mRNA sequence

ATGTACACAACACGTCGGGATAGTACTCCCGACGCGCGTTTGACGTCGAATAAGGAAATGTCAGGATATGGAATTTCCAACGCAATGAAAAGCGTTGGCATAAGAGACGTCGGGAGAGGTGTTCCCGATGCCGTGTTGGTCATGCGTTGGGAATTCATCTCCCGACACATTTCTTTCGACGTGCGTCCCGACGCAGTAAACAACGTAGGAAAAAGACATCCCGACATTTTTGTAGCTTCTCCCAACGTCATTGTGCGTCGGGAGTCTCCCGCCTCTTGTAGTGAATAG

Coding sequence (CDS)

ATGTACACAACACGTCGGGATAGTACTCCCGACGCGCGTTTGACGTCGAATAAGGAAATGTCAGGATATGGAATTTCCAACGCAATGAAAAGCGTTGGCATAAGAGACGTCGGGAGAGGTGTTCCCGATGCCGTGTTGGTCATGCGTTGGGAATTCATCTCCCGACACATTTCTTTCGACGTGCGTCCCGACGCAGTAAACAACGTAGGAAAAAGACATCCCGACATTTTTGTAGCTTCTCCCAACGTCATTGTGCGTCGGGAGTCTCCCGCCTCTTGTAGTGAATAG

Protein sequence

MYTTRRDSTPDARLTSNKEMSGYGISNAMKSVGIRDVGRGVPDAVLVMRWEFISRHISFDVRPDAVNNVGKRHPDIFVASPNVIVRRESPASCSE

Homology

[Close]

BLAST of IVF0015517.1 vs. ExPASy TrEMBL
Match: A0A5A7U5Y5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00190 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.9e-21
Identity = 53/80 (66.25%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 7   DSTPDARLTSNKEMSGYGISNAMKSVGIRDVGRGVPDAVLVMRWEFISRHISFDVRPDAV 66
           DS+PDA  TS+K+ SGYGI NA  S+GIRDVGRG+PDA+LVM  +F+S+ IS DVRPDAV
Sbjct: 44  DSSPDAHPTSDKKTSGYGIPNATTSIGIRDVGRGIPDAMLVMCRKFVSQRISSDVRPDAV 103

Query: 67  NNVGKRHPDIFVASPNVIVR 87
           N+V KR+P++FVAS  +IVR
Sbjct: 104 NDVEKRYPNVFVASSKIIVR 123

[Close]

BLAST of IVF0015517.1 vs. ExPASy TrEMBL
Match: A0A5A7T5M8 (Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4533G00110 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.3e-20
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 3   TTRRDSTPDARLTSNKEMSGYGISNA----------------MKSVGIRDVGRGVPDAVL 62
           TTRR+S+PD R TS+ +  G GI +A                MKSV IRDVGRG+P+A+L
Sbjct: 66  TTRRESSPDERPTSDTKTLGEGIPDAIASVGIRDVGEGITETMKSVSIRDVGRGIPNAML 125

Query: 63  VMRWEFISRHISFDVRPDAVNNVGKRHPDIFVASPNVIVRRESPASCS 95
           VM   FIS+ +SFDV  DAV +VGKR+PD+F+ S +V VRRESP SCS
Sbjct: 126 VMHGGFISQRVSFDVYLDAVKDVGKRYPDVFLGSFDVFVRRESPLSCS 173

[Close]

BLAST of IVF0015517.1 vs. ExPASy TrEMBL
Match: A0A5D3BQN2 (Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G001040 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.9e-18
Identity = 56/108 (51.85%), Postives = 71/108 (65.74%), Query Frame = 0


Query: 3   TTRRDSTPDARLTSNKEMSGYGISNA----------------MKSVGIRDVGRGVPDAVL 62
           TTR +S+PD R TS+ +  G GI +A                MKSV IRDVGRG+P+A+L
Sbjct: 66  TTRLESSPDERPTSDTKTLGEGIPDAIASVGIRDVGEGITDTMKSVSIRDVGRGIPNAML 125

Query: 63  VMRWEFISRHISFDVRPDAVNNVGKRHPDIFVASPNVIVRRESPASCS 95
           VM   FIS+ +SFDV  DAV +VGKR+PD+F+   +V VRRESP SCS
Sbjct: 126 VMHGGFISQRVSFDVCLDAVKDVGKRYPDVFLGFFDVFVRRESPLSCS 173

[Close]

BLAST of IVF0015517.1 vs. ExPASy TrEMBL
Match: A0A5D3DGV6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00040 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.4e-17
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 5   RRDSTPDARLTSNKEMSGYGISNAMKSVGIRDVGRGVPDAVLVMRWEFISRHISFDVRPD 64
           R    P     S  E S  GI +AMK VGIR V R +P+AVLVMR EF+SR +S DV PD
Sbjct: 83  REKELPTPLQASAYETSVVGILDAMKRVGIRAVERDIPNAVLVMRREFVSRRVSSDVCPD 142

Query: 65  AVNNVGKRHPDIFVASPNVIVRRE-SPASCSE 96
           AVN+VGKR+PD+F+AS ++++RRE SP  CSE
Sbjct: 143 AVNDVGKRYPDVFLASFDIVMRRESSPXFCSE 174

[Close]

BLAST of IVF0015517.1 vs. ExPASy TrEMBL
Match: A0A5A7UDU5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00260 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.1e-11
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 24  GISNAMKSVGIRDVGRGVPDAVLVMRWEFISRHISFDVRPDAVNNVGKRHPDIFVASPNV 83
           GI +A+  + I DVGRG+PDAVLVM  +F+SR +S DVRPD V +VG R+P + +AS +V
Sbjct: 476 GIPDALYCIDIGDVGRGIPDAVLVMHRKFVSRRVSSDVRPDIVKDVGNRNPYVVLASSDV 535

Query: 84  IVRRESPA 92
           ++ RES A
Sbjct: 536 MLCRESLA 543

[Close]

BLAST of IVF0015517.1 vs. NCBI nr
Match: KAA0050688.1 (uncharacterized protein E6C27_scaffold673G001730 [Cucumis melo var. makuwa] >TYK07748.1 uncharacterized protein E5676_scaffold1737G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (275), Expect = 7.60e-29
Identity = 53/80 (66.25%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 7   DSTPDARLTSNKEMSGYGISNAMKSVGIRDVGRGVPDAVLVMRWEFISRHISFDVRPDAV 66
           DS+PDA  TS+K+ SGYGI NA  S+GIRDVGRG+PDA+LVM  +F+S+ IS DVRPDAV
Sbjct: 44  DSSPDAHPTSDKKTSGYGIPNATTSIGIRDVGRGIPDAMLVMCRKFVSQRISSDVRPDAV 103

Query: 67  NNVGKRHPDIFVASPNVIVR 86
           N+V KR+P++FVAS  +IVR
Sbjct: 104 NDVEKRYPNVFVASSKIIVR 123

[Close]

BLAST of IVF0015517.1 vs. NCBI nr
Match: KAA0036659.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (263), Expect = 3.44e-26
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 3   TTRRDSTPDARLTSNKEMSGYGISNA----------------MKSVGIRDVGRGVPDAVL 62
           TTRR+S+PD R TS+ +  G GI +A                MKSV IRDVGRG+P+A+L
Sbjct: 66  TTRRESSPDERPTSDTKTLGEGIPDAIASVGIRDVGEGITETMKSVSIRDVGRGIPNAML 125

Query: 63  VMRWEFISRHISFDVRPDAVNNVGKRHPDIFVASPNVIVRRESPASCS 94
           VM   FIS+ +SFDV  DAV +VGKR+PD+F+ S +V VRRESP SCS
Sbjct: 126 VMHGGFISQRVSFDVYLDAVKDVGKRYPDVFLGSFDVFVRRESPLSCS 173

[Close]

BLAST of IVF0015517.1 vs. NCBI nr
Match: TYK01082.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 4.39e-24
Identity = 56/108 (51.85%), Postives = 71/108 (65.74%), Query Frame = 0


Query: 3   TTRRDSTPDARLTSNKEMSGYGISNA----------------MKSVGIRDVGRGVPDAVL 62
           TTR +S+PD R TS+ +  G GI +A                MKSV IRDVGRG+P+A+L
Sbjct: 66  TTRLESSPDERPTSDTKTLGEGIPDAIASVGIRDVGEGITDTMKSVSIRDVGRGIPNAML 125

Query: 63  VMRWEFISRHISFDVRPDAVNNVGKRHPDIFVASPNVIVRRESPASCS 94
           VM   FIS+ +SFDV  DAV +VGKR+PD+F+   +V VRRESP SCS
Sbjct: 126 VMHGGFISQRVSFDVCLDAVKDVGKRYPDVFLGFFDVFVRRESPLSCS 173

[Close]

BLAST of IVF0015517.1 vs. NCBI nr
Match: TYK22927.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 1.44e-22
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 5   RRDSTPDARLTSNKEMSGYGISNAMKSVGIRDVGRGVPDAVLVMRWEFISRHISFDVRPD 64
           R    P     S  E S  GI +AMK VGIR V R +P+AVLVMR EF+SR +S DV PD
Sbjct: 83  REKELPTPLQASAYETSVVGILDAMKRVGIRAVERDIPNAVLVMRREFVSRRVSSDVCPD 142

Query: 65  AVNNVGKRHPDIFVASPNVIVRRES-PASCSE 95
           AVN+VGKR+PD+F+AS ++++RRES P  CSE
Sbjct: 143 AVNDVGKRYPDVFLASFDIVMRRESSPXFCSE 174

[Close]

BLAST of IVF0015517.1 vs. NCBI nr
Match: KAA0053370.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.55e-13
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 24  GISNAMKSVGIRDVGRGVPDAVLVMRWEFISRHISFDVRPDAVNNVGKRHPDIFVASPNV 83
           GI +A+  + I DVGRG+PDAVLVM  +F+SR +S DVRPD V +VG R+P + +AS +V
Sbjct: 476 GIPDALYCIDIGDVGRGIPDAVLVMHRKFVSRRVSSDVRPDIVKDVGNRNPYVVLASSDV 535

Query: 84  IVRRESPA 91
           ++ RES A
Sbjct: 536 MLCRESLA 543

The following BLAST results are available for this feature:

BLAST of IVF0015517.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015517.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U5Y5	2.9e-21	66.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T5M8	9.3e-20	53.70	Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BQN2	3.9e-18	51.85	Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3DGV6	7.4e-17	56.52	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7UDU5	6.1e-11	54.41	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of IVF0015517.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050688.1	7.60e-29	66.25	uncharacterized protein E6C27_scaffold673G001730 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0036659.1	3.44e-26	53.70	zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa]	[more]
TYK01082.1	4.39e-24	51.85	zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa]	[more]
TYK22927.1	1.44e-22	56.52	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0053370.1	1.55e-13	54.41	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0015517.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0015517	IVF0015517	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0015517.1-exon	IVF0015517.1-exon-chr04:22647869..22648156	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0015517.1-cds	IVF0015517.1-cds-chr04:22647869..22648156	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0015517.1	IVF0015517.1-protein	polypeptide