IVF0014907.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0014907.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	chr02: 10121602 .. 10122162 (-)
Sequence length	528
RNA-Seq Expression	IVF0014907.1
Synteny	IVF0014907.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCTAGCCATGCGCCCATAAACCCACCCATCATTAACTTGGACCTTGAGCATATTGATTTAAATTTTCTCATTGTGAATTTGTCTGAAGGGGATGTTTCCGCATAGGAGGCGGTAGAGGAGGTAGAGATAGTCGACCTTGAGCTTCCTTTGACCATTTATGACTCACTCTTCCAAGACATCCTTGTAGAGAAAGATGCAGGAGACACGAGTTCAGAGGAAGAAGCACAACTAGAGAAAGAAGTTGAACTTCTCAATGTACTTCACAATGTCATCATGGATCCTATGAACGTCACTTTTAAAGAAATGCTCTTGGAGAACGTGGTGATGAAGGATCAAATCGCCAGCCTTAACACTCAGGTGTATGGATTAGAAGCCACAGTCTCCACCCTCAACTCCACGGTCGTACAACTCTCCTCTACCTTGACTAACTTAACCAGTTTGATGATGGCCCACTCCAACCAGTCGCGTCACATTGTAGACCGGCACGACAAATGGAATATATGCACATGGTGTTTGTACAGCGTGTTCCCTAGCCTATCATCGCACCTGAGTTGA

mRNA sequence

ATGCCACCTAGCCATGCGCCCATAAACCCACCCATCATTAACTTGGACCTTGAGCATATTGATTTAAATTTTCTCATTGTGAATTTGTCTGAAGGGGATATAGTCGACCTTGAGCTTCCTTTGACCATTTATGACTCACTCTTCCAAGACATCCTTGTAGAGAAAGATGCAGGAGACACGAGTTCAGAGGAAGAAGCACAACTAGAGAAAGAAGTTGAACTTCTCAATGTACTTCACAATGTCATCATGGATCCTATGAACGTCACTTTTAAAGAAATGCTCTTGGAGAACGTGGTGATGAAGGATCAAATCGCCAGCCTTAACACTCAGGTGTATGGATTAGAAGCCACAGTCTCCACCCTCAACTCCACGGTCGTACAACTCTCCTCTACCTTGACTAACTTAACCAGTTTGATGATGGCCCACTCCAACCAGTCGCGTCACATTGTAGACCGGCACGACAAATGGAATATATGCACATGGTGTTTGTACAGCGTGTTCCCTAGCCTATCATCGCACCTGAGTTGA

Coding sequence (CDS)

ATGCCACCTAGCCATGCGCCCATAAACCCACCCATCATTAACTTGGACCTTGAGCATATTGATTTAAATTTTCTCATTGTGAATTTGTCTGAAGGGGATATAGTCGACCTTGAGCTTCCTTTGACCATTTATGACTCACTCTTCCAAGACATCCTTGTAGAGAAAGATGCAGGAGACACGAGTTCAGAGGAAGAAGCACAACTAGAGAAAGAAGTTGAACTTCTCAATGTACTTCACAATGTCATCATGGATCCTATGAACGTCACTTTTAAAGAAATGCTCTTGGAGAACGTGGTGATGAAGGATCAAATCGCCAGCCTTAACACTCAGGTGTATGGATTAGAAGCCACAGTCTCCACCCTCAACTCCACGGTCGTACAACTCTCCTCTACCTTGACTAACTTAACCAGTTTGATGATGGCCCACTCCAACCAGTCGCGTCACATTGTAGACCGGCACGACAAATGGAATATATGCACATGGTGTTTGTACAGCGTGTTCCCTAGCCTATCATCGCACCTGAGTTGA

Protein sequence

MPPSHAPINPPIINLDLEHIDLNFLIVNLSEGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMMAHSNQSRHIVDRHDKWNICTWCLYSVFPSLSSHLS

Homology

[Close]

BLAST of IVF0014907.1 vs. ExPASy TrEMBL
Match: A0A5D3BD35 (Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00990 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.7e-70
Identity = 143/147 (97.28%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 29  LSEGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHNVIMDPMNV 88
           + E +IVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHNVIMDPMNV
Sbjct: 294 VEEVEIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHNVIMDPMNV 353

Query: 89  TFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMMAHSNQSRH 148
           TFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMMAHSNQSRH
Sbjct: 354 TFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMMAHSNQSRH 413

Query: 149 IVDRHDKWNICTWCLYSVFPSLSSHLS 176
           IVDRHDKWNICTWCLYSVFPSLSSHLS
Sbjct: 414 IVDRHDKWNICTWCLYSVFPSLSSHLS 440

[Close]

BLAST of IVF0014907.1 vs. ExPASy TrEMBL
Match: A0A5D3C2N8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00660 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.6e-33
Identity = 95/159 (59.75%), Postives = 110/159 (69.18%), Query Frame = 0


Query: 8   INPPIINLDLEHIDLNFLIVNLSEG-----------DIVDLELPLTIYDSLFQDILVEKD 67
           IN  IINLDLEHIDLN  +VNLSE            +IVD  LPL +YD  FQDI +++D
Sbjct: 45  INLSIINLDLEHIDLNVPVVNLSEWEASIEKAAEEVEIVDPNLPLIVYDPFFQDIPIKED 104

Query: 68  AGDTSSEEEAQ------LEKEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQ 127
           AG TSS+EEAQ       EKEVE  +VL+NVI++ MN  F E+ L+NV  KDQI +LN Q
Sbjct: 105 AGKTSSKEEAQSDDEAPTEKEVEFPDVLYNVIVEVMNAAFNEVFLKNVAKKDQITNLNIQ 164

Query: 128 VYGLEATVSTLNSTVVQLSSTLTNLTSLMMAHSNQSRHI 150
           V  LEA VS LNSTVVQLS  L NLTSLM+AHSNQS HI
Sbjct: 165 VQSLEAMVSNLNSTVVQLSFALINLTSLMIAHSNQSCHI 203

[Close]

BLAST of IVF0014907.1 vs. ExPASy TrEMBL
Match: A0A5D3C3K8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1085G00020 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.5e-31
Identity = 86/130 (66.15%), Postives = 102/130 (78.46%), Query Frame = 0


Query: 31  EGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQL------EKEVELLNVLHNVIMD 90
           E +IVD ELPLT+YD LFQDI +E+DAG+ SS+EEAQL      EKEVE  NVLHNVI  
Sbjct: 56  EVEIVDPELPLTVYDPLFQDIPIEEDAGEKSSKEEAQLEEEAPTEKEVEPRNVLHNVIAK 115

Query: 91  PMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMMAHSN 150
            MN  FKE++LENV MKDQI +  TQ+ GLEATVSTLNS V QLSS LT+LTSLM+A+SN
Sbjct: 116 LMNAAFKEVVLENVTMKDQITNY-TQMQGLEATVSTLNSMVPQLSSALTSLTSLMIAYSN 175

Query: 151 QSRHIVDRHD 155
           QS HI ++H+
Sbjct: 176 QSHHIAEQHN 184

[Close]

BLAST of IVF0014907.1 vs. ExPASy TrEMBL
Match: A0A5A7VBZ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1213G00030 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-23
Identity = 73/129 (56.59%), Postives = 83/129 (64.34%), Query Frame = 0


Query: 3   PSHAPINPPIINLDLEHIDLNFLIVNLSEGDIVDLELPLTIYDSLFQDILVEKDAGDTSS 62
           PSH PIN   INLD EHIDLN ++VN                   F  I VE+D G TSS
Sbjct: 39  PSHTPINLTTINLDPEHIDLNVIVVNF-----------------FFYHIFVEEDTGKTSS 98

Query: 63  EEEAQL------EKEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEA 122
           +EEAQL      EKEVEL +V+HNVI +PMN  FKE+LLENV  KDQ+ SLNT+V GLEA
Sbjct: 99  KEEAQLEKEVPAEKEVELHDVIHNVIAEPMNAAFKEVLLENVATKDQVTSLNTEVQGLEA 150

Query: 123 TVSTLNSTV 126
            VSTLNS V
Sbjct: 159 IVSTLNSRV 150

[Close]

BLAST of IVF0014907.1 vs. ExPASy TrEMBL
Match: A0A5A7TCG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00750 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.2e-22
Identity = 70/98 (71.43%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 34  IVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLE------KEVELLNVLHNVIMDPMN 93
           IVDL+L LTIYD LFQDILVE+DAG+TS EEEAQ +      KEVE  +VLHNVI   M 
Sbjct: 43  IVDLDLSLTIYDPLFQDILVEEDAGETSFEEEAQPDDEALAAKEVEFYDVLHNVIAGHMY 102

Query: 94  VTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTV 126
            T KE LLEN+VMKDQIASLNTQV GLEATVS LNS V
Sbjct: 103 TTSKEALLENMVMKDQIASLNTQVQGLEATVSNLNSMV 140

[Close]

BLAST of IVF0014907.1 vs. NCBI nr
Match: TYJ97037.1 (pol [Cucumis melo var. makuwa])

HSP 1 Score: 272 bits (696), Expect = 3.70e-87
Identity = 143/146 (97.95%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 30  SEGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHNVIMDPMNVT 89
            E +IVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHNVIMDPMNVT
Sbjct: 295 EEVEIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHNVIMDPMNVT 354

Query: 90  FKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMMAHSNQSRHI 149
           FKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMMAHSNQSRHI
Sbjct: 355 FKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMMAHSNQSRHI 414

Query: 150 VDRHDKWNICTWCLYSVFPSLSSHLS 175
           VDRHDKWNICTWCLYSVFPSLSSHLS
Sbjct: 415 VDRHDKWNICTWCLYSVFPSLSSHLS 440

[Close]

BLAST of IVF0014907.1 vs. NCBI nr
Match: KAA0040567.1 (hypothetical protein E6C27_scaffold262G001370 [Cucumis melo var. makuwa] >TYK05610.1 hypothetical protein E5676_scaffold98G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 151 bits (382), Expect = 1.03e-42
Identity = 95/159 (59.75%), Postives = 110/159 (69.18%), Query Frame = 0


Query: 8   INPPIINLDLEHIDLNFLIVNLSEGD-----------IVDLELPLTIYDSLFQDILVEKD 67
           IN  IINLDLEHIDLN  +VNLSE +           IVD  LPL +YD  FQDI +++D
Sbjct: 45  INLSIINLDLEHIDLNVPVVNLSEWEASIEKAAEEVEIVDPNLPLIVYDPFFQDIPIKED 104

Query: 68  AGDTSSEEEAQ------LEKEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQ 127
           AG TSS+EEAQ       EKEVE  +VL+NVI++ MN  F E+ L+NV  KDQI +LN Q
Sbjct: 105 AGKTSSKEEAQSDDEAPTEKEVEFPDVLYNVIVEVMNAAFNEVFLKNVAKKDQITNLNIQ 164

Query: 128 VYGLEATVSTLNSTVVQLSSTLTNLTSLMMAHSNQSRHI 149
           V  LEA VS LNSTVVQLS  L NLTSLM+AHSNQS HI
Sbjct: 165 VQSLEAMVSNLNSTVVQLSFALINLTSLMIAHSNQSCHI 203

[Close]

BLAST of IVF0014907.1 vs. NCBI nr
Match: TYK05894.1 (hypothetical protein E5676_scaffold1085G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (364), Expect = 5.06e-40
Identity = 86/131 (65.65%), Postives = 102/131 (77.86%), Query Frame = 0


Query: 30  SEGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLE------KEVELLNVLHNVIM 89
            E +IVD ELPLT+YD LFQDI +E+DAG+ SS+EEAQLE      KEVE  NVLHNVI 
Sbjct: 55  EEVEIVDPELPLTVYDPLFQDIPIEEDAGEKSSKEEAQLEEEAPTEKEVEPRNVLHNVIA 114

Query: 90  DPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMMAHS 149
             MN  FKE++LENV MKDQI +  TQ+ GLEATVSTLNS V QLSS LT+LTSLM+A+S
Sbjct: 115 KLMNAAFKEVVLENVTMKDQITNY-TQMQGLEATVSTLNSMVPQLSSALTSLTSLMIAYS 174

Query: 150 NQSRHIVDRHD 154
           NQS HI ++H+
Sbjct: 175 NQSHHIAEQHN 184

[Close]

BLAST of IVF0014907.1 vs. NCBI nr
Match: KAA0063129.1 (hypothetical protein E6C27_scaffold381G00030 [Cucumis melo var. makuwa] >TYK27506.1 hypothetical protein E5676_scaffold1213G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (292), Expect = 9.49e-30
Identity = 73/129 (56.59%), Postives = 83/129 (64.34%), Query Frame = 0


Query: 3   PSHAPINPPIINLDLEHIDLNFLIVNLSEGDIVDLELPLTIYDSLFQDILVEKDAGDTSS 62
           PSH PIN   INLD EHIDLN ++VN                   F  I VE+D G TSS
Sbjct: 39  PSHTPINLTTINLDPEHIDLNVIVVNF-----------------FFYHIFVEEDTGKTSS 98

Query: 63  EEEAQLEKEV------ELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEA 122
           +EEAQLEKEV      EL +V+HNVI +PMN  FKE+LLENV  KDQ+ SLNT+V GLEA
Sbjct: 99  KEEAQLEKEVPAEKEVELHDVIHNVIAEPMNAAFKEVLLENVATKDQVTSLNTEVQGLEA 150

Query: 123 TVSTLNSTV 125
            VSTLNS V
Sbjct: 159 IVSTLNSRV 150

[Close]

BLAST of IVF0014907.1 vs. NCBI nr
Match: KAA0041154.1 (hypothetical protein E6C27_scaffold128G00750 [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (283), Expect = 5.42e-28
Identity = 70/103 (67.96%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 29  LSEGDIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLE------KEVELLNVLHNVI 88
           + +  IVDL+L LTIYD LFQDILVE+DAG+TS EEEAQ +      KEVE  +VLHNVI
Sbjct: 38  IEDEAIVDLDLSLTIYDPLFQDILVEEDAGETSFEEEAQPDDEALAAKEVEFYDVLHNVI 97

Query: 89  MDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTV 125
              M  T KE LLEN+VMKDQIASLNTQV GLEATVS LNS V
Sbjct: 98  AGHMYTTSKEALLENMVMKDQIASLNTQVQGLEATVSNLNSMV 140

The following BLAST results are available for this feature:

BLAST of IVF0014907.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0014907.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BD35	3.7e-70	97.28	Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00990 PE=4 SV=1	[more]
A0A5D3C2N8	1.6e-33	59.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C3K8	1.5e-31	66.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VBZ9	1.5e-23	56.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TCG4	2.2e-22	71.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0014907.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ97037.1	3.70e-87	97.95	pol [Cucumis melo var. makuwa]	[more]
KAA0040567.1	1.03e-42	59.75	hypothetical protein E6C27_scaffold262G001370 [Cucumis melo var. makuwa] >TYK056...	[more]
TYK05894.1	5.06e-40	65.65	hypothetical protein E5676_scaffold1085G00020 [Cucumis melo var. makuwa]	[more]
KAA0063129.1	9.49e-30	56.59	hypothetical protein E6C27_scaffold381G00030 [Cucumis melo var. makuwa] >TYK2750...	[more]
KAA0041154.1	5.42e-28	67.96	hypothetical protein E6C27_scaffold128G00750 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0014907.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0014907	IVF0014907	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0014907.1-exon	IVF0014907.1-exon-chr02:10121602..10122030	exon
IVF0014907.1-exon	IVF0014907.1-exon-chr02:10122064..10122162	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0014907.1-cds	IVF0014907.1-cds-chr02:10121602..10122030	CDS
IVF0014907.1-cds	IVF0014907.1-cds-chr02:10122064..10122162	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0014907.1	IVF0014907.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding