IVF0013269.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0013269.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr06: 5883641 .. 5883799 (-)
Sequence length	159
RNA-Seq Expression	IVF0013269.1
Synteny	IVF0013269.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGACAAATCGACTGTGGAAAAGCGACGGAAGAGAAAGCCACTGTGGAAAAACGGAAGACGAAGCTACGGTGGAAAAACAGAAAAGGACGCGAGGGTGGAAATGCGCCAAGAAGTTTTTAAAAACGGAAGTTCCTGGAAAGCTTTTAAGAAGTAA

mRNA sequence

ATGGAAGACAAATCGACTGTGGAAAAGCGACGGAAGAGAAAGCCACTGTGGAAAAACGGAAGACGAAGCTACGGTGGAAAAACAGAAAAGGACGCGAGGGTGGAAATGCGCCAAGAAGTTTTTAAAAACGGAAGTTCCTGGAAAGCTTTTAAGAAGTAA

Coding sequence (CDS)

ATGGAAGACAAATCGACTGTGGAAAAGCGACGGAAGAGAAAGCCACTGTGGAAAAACGGAAGACGAAGCTACGGTGGAAAAACAGAAAAGGACGCGAGGGTGGAAATGCGCCAAGAAGTTTTTAAAAACGGAAGTTCCTGGAAAGCTTTTAAGAAGTAA

Protein sequence

MEDKSTVEKRRKRKPLWKNGRRSYGGKTEKDARVEMRQEVFKNGSSWKAFKK

Homology

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BLAST of IVF0013269.1 vs. NCBI nr
Match: KAA0063265.1 (BTB/POZ domain-containing protein [Cucumis melo var. makuwa] >TYK31509.1 BTB/POZ domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 46.2 bits (108), Expect = 3.31e-04
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 3   DKSTVEKRRKRKPLWKNGRRSYGGKTE 29
           +K TVEKRRKRK  WKNGR SYGGKTE
Sbjct: 117 EKPTVEKRRKRKRRWKNGRESYGGKTE 143

The following BLAST results are available for this feature:

BLAST of IVF0013269.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013269.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013269.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063265.1	3.31e-04	81.48	BTB/POZ domain-containing protein [Cucumis melo var. makuwa] >TYK31509.1 BTB/POZ...	[more]

BLAST of IVF0013269.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0013269	IVF0013269	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0013269.1-exon	IVF0013269.1-exon-chr06:5883641..5883799	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0013269.1-cds	IVF0013269.1-cds-chr06:5883641..5883799	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0013269.1	IVF0013269.1-protein	polypeptide