IVF0012790.1 (mRNA) Melon (IVF77) v1

Overview
NameIVF0012790.1
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionNAD(P)H dehydrogenase subunit 5
Locationtig00007088: 1807317 .. 1808250 (+)
Sequence length495
RNA-Seq ExpressionIVF0012790.1
SyntenyIVF0012790.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATTCTGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCCTTTCGATGACCTATCTTGTCTTTCAGGGATATCTATATGATCCGATTGATTGCGTAAAGCCCGCGGTAGCAAGGGAAGCGGGGAAAGTATACAGAAAAGACAGTTCTTTTCTATTCTATTAGTATTAGATTAGTATTAGTTAGTGATCTCCGCTCAGTGAGTCCTTTCTTCCGTGATGAACTGTTGGCACCAGTCCTCCATTTTTTCTCTGTGGATCGAGGAGAAAGGGGGCTCGGTGGGAAGAGGATTGTAAGATGAGAGAAGCAAGGAGGTCAACCTCTTTCAAATATACAAGATGGATTCTGGCAATGCAATGTAGTTGGACTCTCATGTCGATCCGAATGAATCATCCTTTCCACGGAGGTCAATCTTTGCCTGCTAGGCAAGAGGATAGCAAGTTACAAATTCTGTCGCGGTAGGACATTTCTTTCTATTACTATGAAATTCATAAATGAAGTAGTTAATGGTGGGCTTACCATTATCCTTTTTGCAATGACGAATCTTGTATGTGTTCCGAAGAAAAGTTGTTCATTTTTCGGGGTCTCGAAGGGGCGTGGAAAGAGATCAAAACTCTGGAATGGAAATGGAAAAGAGATCTCACTCCAGTTCCTTCGGAAATGGTCAGATCTTTGGCACAAGAAGAAGGGGTTGATCCATATCATCTTGACTGGGTTCTGATTTCTCTATTTTTTTCATAATACCGAGTTGGCTTCTTTTCCTACCCGTATCGAATAGAACATGCTGAGCCAAATCTTCTTCATGTAAAACCTGCTTTATTTAGATCGGGAAAATCGTACGGTTTTATGAAAGCGTGTGCTATGGCTCGAATCCGTAGTCAATCCTATTTACGATAG

mRNA sequence

ATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATTCTGGCTTTCGTGCTTTGGGATATCTATATGATCCGATTGATTGCGTAAAGCCCGCGGTAGCAAGGGAAGCGGGGAAATCCTCCATTTTTTCTCTGTGGATCGAGGAGAAAGGGGGCTCGGTGGGAAGAGGATTTTGGACTCTCATGTCGATCCGAATGAATCATCCTTTCCACGGAGGTCAATCTTTGCCTGCTAGGCAAGAGGATAGCAAGTTACAAATTCTGTCGCGAAAAGTTGTTCATTTTTCGGGGTCTCGAAGGGGCGTGGAAAGAGATCAAAACTCTGGAATGGAAATGGAAAAGAGATCTCACTCCAGTTCCTTCGGAAATGAACATGCTGAGCCAAATCTTCTTCATGTAAAACCTGCTTTATTTAGATCGGGAAAATCGTACGGTTTTATGAAAGCGTGTGCTATGGCTCGAATCCGTAGTCAATCCTATTTACGATAG

Coding sequence (CDS)

ATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATTCTGGCTTTCGTGCTTTGGGATATCTATATGATCCGATTGATTGCGTAAAGCCCGCGGTAGCAAGGGAAGCGGGGAAATCCTCCATTTTTTCTCTGTGGATCGAGGAGAAAGGGGGCTCGGTGGGAAGAGGATTTTGGACTCTCATGTCGATCCGAATGAATCATCCTTTCCACGGAGGTCAATCTTTGCCTGCTAGGCAAGAGGATAGCAAGTTACAAATTCTGTCGCGAAAAGTTGTTCATTTTTCGGGGTCTCGAAGGGGCGTGGAAAGAGATCAAAACTCTGGAATGGAAATGGAAAAGAGATCTCACTCCAGTTCCTTCGGAAATGAACATGCTGAGCCAAATCTTCTTCATGTAAAACCTGCTTTATTTAGATCGGGAAAATCGTACGGTTTTATGAAAGCGTGTGCTATGGCTCGAATCCGTAGTCAATCCTATTTACGATAG

Protein sequence

MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVAREAGKSSIFSLWIEEKGGSVGRGFWTLMSIRMNHPFHGGQSLPARQEDSKLQILSRKVVHFSGSRRGVERDQNSGMEMEKRSHSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKACAMARIRSQSYLR
Homology
BLAST of IVF0012790.1 vs. ExPASy TrEMBL
Match: A0A0A0L231 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G628320 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.6e-80
Identity = 150/160 (93.75%), Postives = 153/160 (95.62%), Query Frame = 0

Query: 1   MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVAREAGKSSIFSLWIEEKGGSVGRGF 60
           MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVA E GKSSIFSLWIEEKGGS GRGF
Sbjct: 1   MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGKSSIFSLWIEEKGGSAGRGF 60

Query: 61  WTLMSIRMNHPFHGGQSLPARQEDSKLQILSRKVVHFSGSRRGVERDQNSGMEMEKRSHS 120
           WTLMSIRMNHPFHGG+SLPARQEDSKLQILSRKVVHFSGSRRGVE  +NSGMEMEKR +S
Sbjct: 61  WTLMSIRMNHPFHGGKSLPARQEDSKLQILSRKVVHFSGSRRGVETHKNSGMEMEKRCNS 120

Query: 121 SSFGNEHAEPNLLHVKPALFRSGKSYGFMKACAMARIRSQ 161
           SSFGNEHAEPNLLHVKPALFRSGKSYGFMK CAMARIRSQ
Sbjct: 121 SSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQ 160

BLAST of IVF0012790.1 vs. ExPASy TrEMBL
Match: A0A2P5XUU9 (Uncharacterized protein ycf68 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA13525 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.9e-13
Identity = 62/165 (37.58%), Postives = 75/165 (45.45%), Query Frame = 0

Query: 1   MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVAREAGKSSI---------------- 60
           M LCTLRIGIHFLKD GFRALGYLYDPI CVK A+  E GKS I                
Sbjct: 1   MWLCTLRIGIHFLKDPGFRALGYLYDPIGCVKLAITTEPGKSYIPFCLCGPRRKAAQQEG 60

Query: 61  --------------FSLWIEEKGGSVGRGFWTLMSIRMNHPFHGGQSL---PARQED--S 120
                         ++ W+ E   S     W  M IRMNH FHG  +L   P ++++  S
Sbjct: 61  DCTMREARRSTSFKYTTWVLEMQRS-----WAFMRIRMNHLFHGVTNLVCVPKKRKEILS 120

Query: 121 KLQILSRKVVHFSGSRRGVERD-----QNSGMEMEKRSHSSSFGN 126
           K + L     H        +RD         +E  K  +S S GN
Sbjct: 121 KFRGLKGSWKHIRTLEWNWKRDVTPVSSEMAVETTKLEYSRSRGN 160

BLAST of IVF0012790.1 vs. ExPASy TrEMBL
Match: A0A5N5IXQ9 (Uncharacterized protein ycf68 OS=Salix brachista OX=2182728 GN=DKX38_030151 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.1e-11
Identity = 40/60 (66.67%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 41 KSSIFSLWIEEKGGSVG--------RGFWTLMSIRMNHPFHGGQSLPARQEDSKLQILSR 93
          +S I SLW EEK  S          +  WTLMSIRMNHPFHGG+SLPARQEDSKLQILSR
Sbjct: 6  QSYILSLWTEEKSASFKYTTWILAIQWSWTLMSIRMNHPFHGGKSLPARQEDSKLQILSR 65

BLAST of IVF0012790.1 vs. ExPASy TrEMBL
Match: W9R592 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000755 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.1e-11
Identity = 38/50 (76.00%), Postives = 40/50 (80.00%), Query Frame = 0

Query: 115 EKRSHSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKACAMARIRSQSYLR 165
           +K SH +S      EPNLLHVKPALFRSGKSYGFMK CAMARIRSQSY R
Sbjct: 104 KKASHQASNATSKPEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYFR 153

BLAST of IVF0012790.1 vs. ExPASy TrEMBL
Match: A0A103XYX3 (NAD(P)H dehydrogenase subunit 5 OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_022308 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.3e-08
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 0

Query: 22  GYLYDPIDCVKPAVAREAGKSSIFSLWIEEKGGSVGRGFW 62
           GYLY+PIDCVKPAVA EAGKS I SLW EEKGG   RG +
Sbjct: 68  GYLYNPIDCVKPAVAAEAGKSYILSLWTEEKGGMAERGLY 107

BLAST of IVF0012790.1 vs. NCBI nr
Match: PPS07120.1 (hypothetical protein GOBAR_AA13525 [Gossypium barbadense])

HSP 1 Score: 85.1 bits (209), Expect = 7.37e-16
Identity = 53/122 (43.44%), Postives = 61/122 (50.00%), Query Frame = 0

Query: 1   MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVAREAGKSSI---------------- 60
           M LCTLRIGIHFLKD GFRALGYLYDPI CVK A+  E GKS I                
Sbjct: 1   MWLCTLRIGIHFLKDPGFRALGYLYDPIGCVKLAITTEPGKSYIPFCLCGPRRKAAQQEG 60

Query: 61  --------------FSLWIEEKGGSVGRGFWTLMSIRMNHPFHGGQSLPARQEDSKLQIL 92
                         ++ W+ E   S     W  M IRMNH FHG  +L    +  K +IL
Sbjct: 61  DCTMREARRSTSFKYTTWVLEMQRS-----WAFMRIRMNHLFHGVTNLVCVPKKRK-EIL 116

BLAST of IVF0012790.1 vs. NCBI nr
Match: EXB56973.1 (hypothetical protein L484_000755 [Morus notabilis])

HSP 1 Score: 78.6 bits (192), Expect = 5.87e-15
Identity = 38/50 (76.00%), Postives = 40/50 (80.00%), Query Frame = 0

Query: 115 EKRSHSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKACAMARIRSQSYLR 164
           +K SH +S      EPNLLHVKPALFRSGKSYGFMK CAMARIRSQSY R
Sbjct: 104 KKASHQASNATSKPEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYFR 153

BLAST of IVF0012790.1 vs. NCBI nr
Match: KAB5511226.1 (hypothetical protein DKX38_030151 [Salix brachista])

HSP 1 Score: 77.0 bits (188), Expect = 8.04e-14
Identity = 40/60 (66.67%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 41 KSSIFSLWIEEKGGSVG--------RGFWTLMSIRMNHPFHGGQSLPARQEDSKLQILSR 92
          +S I SLW EEK  S          +  WTLMSIRMNHPFHGG+SLPARQEDSKLQILSR
Sbjct: 6  QSYILSLWTEEKSASFKYTTWILAIQWSWTLMSIRMNHPFHGGKSLPARQEDSKLQILSR 65

BLAST of IVF0012790.1 vs. NCBI nr
Match: RYR42393.1 (hypothetical protein Ahy_A08g038866 [Arachis hypogaea])

HSP 1 Score: 63.5 bits (153), Expect = 3.36e-10
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0

Query: 61 WTLMSIRMNHPFHGGQSLPARQEDSKLQILS 91
          WTLMSIR N+PFHGG+SLPARQEDSKLQILS
Sbjct: 23 WTLMSIRTNYPFHGGKSLPARQEDSKLQILS 53

BLAST of IVF0012790.1 vs. NCBI nr
Match: RYQ84274.1 (hypothetical protein Ahy_B10g103410 [Arachis hypogaea] >RYQ97004.1 hypothetical protein Ahy_B08g092965 [Arachis hypogaea])

HSP 1 Score: 63.5 bits (153), Expect = 3.36e-10
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0

Query: 61 WTLMSIRMNHPFHGGQSLPARQEDSKLQILS 91
          WTLMSIR N+PFHGG+SLPARQEDSKLQILS
Sbjct: 23 WTLMSIRTNYPFHGGKSLPARQEDSKLQILS 53

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L2311.6e-8093.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G628320 PE=4 SV=1[more]
A0A2P5XUU92.9e-1337.58Uncharacterized protein ycf68 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA13525 P... [more]
A0A5N5IXQ96.1e-1166.67Uncharacterized protein ycf68 OS=Salix brachista OX=2182728 GN=DKX38_030151 PE=3... [more]
W9R5926.1e-1176.00Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000755 PE=4 SV=1[more]
A0A103XYX38.3e-0875.00NAD(P)H dehydrogenase subunit 5 OS=Cynara cardunculus var. scolymus OX=59895 GN=... [more]
Match NameE-valueIdentityDescription
PPS07120.17.37e-1643.44hypothetical protein GOBAR_AA13525 [Gossypium barbadense][more]
EXB56973.15.87e-1576.00hypothetical protein L484_000755 [Morus notabilis][more]
KAB5511226.18.04e-1466.67hypothetical protein DKX38_030151 [Salix brachista][more]
RYR42393.13.36e-1090.32hypothetical protein Ahy_A08g038866 [Arachis hypogaea][more]
RYQ84274.13.36e-1090.32hypothetical protein Ahy_B10g103410 [Arachis hypogaea] >RYQ97004.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..123

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0012790IVF0012790gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0012790.1-exonIVF0012790.1-exon-tig00007088:1807317..1807379exon
IVF0012790.1-exonIVF0012790.1-exon-tig00007088:1807423..1807482exon
IVF0012790.1-exonIVF0012790.1-exon-tig00007088:1807590..1807645exon
IVF0012790.1-exonIVF0012790.1-exon-tig00007088:1807716..1807811exon
IVF0012790.1-exonIVF0012790.1-exon-tig00007088:1807916..1808016exon
IVF0012790.1-exonIVF0012790.1-exon-tig00007088:1808132..1808250exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0012790.1-cdsIVF0012790.1-cds-tig00007088:1807317..1807379CDS
IVF0012790.1-cdsIVF0012790.1-cds-tig00007088:1807423..1807482CDS
IVF0012790.1-cdsIVF0012790.1-cds-tig00007088:1807590..1807645CDS
IVF0012790.1-cdsIVF0012790.1-cds-tig00007088:1807716..1807811CDS
IVF0012790.1-cdsIVF0012790.1-cds-tig00007088:1807916..1808016CDS
IVF0012790.1-cdsIVF0012790.1-cds-tig00007088:1808132..1808250CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0012790.1IVF0012790.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0048038 quinone binding