IVF0012767.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0012767.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr04: 23213066 .. 23213218 (-)
Sequence length	153
RNA-Seq Expression	IVF0012767.1
Synteny	IVF0012767.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAATTGCGACGACATTGACGACGTGGACGAGGGAGACTCCGTGTACGTCAAGATCACCATTACAGAAGATATTCAGTACATTGAGACGACAAACGAGTGGTCTCAGTGGTGCGACGAATTAGCTGAAGTAATGTTCAAAGAATGGTAG

mRNA sequence

ATGAAAAATTGCGACGACATTGACGACGTGGACGAGGGAGACTCCGTGTACGTCAAGATCACCATTACAGAAGATATTCAGTACATTGAGACGACAAACGAGTGGTCTCAGTGGTGCGACGAATTAGCTGAAGTAATGTTCAAAGAATGGTAG

Coding sequence (CDS)

ATGAAAAATTGCGACGACATTGACGACGTGGACGAGGGAGACTCCGTGTACGTCAAGATCACCATTACAGAAGATATTCAGTACATTGAGACGACAAACGAGTGGTCTCAGTGGTGCGACGAATTAGCTGAAGTAATGTTCAAAGAATGGTAG

Protein sequence

MKNCDDIDDVDEGDSVYVKITITEDIQYIETTNEWSQWCDELAEVMFKEW

Homology

[Close]

BLAST of IVF0012767.1 vs. ExPASy TrEMBL
Match: A0A5A7U269 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00250 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.3e-16
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 1  MKNCDDIDDVDEGDSVYVKITITEDIQYIETTNEWSQWCDELAE 45
          MKNCDDIDDVDEGDSVYV ITITEDIQYIETTNEWSQWCDELAE
Sbjct: 53 MKNCDDIDDVDEGDSVYVTITITEDIQYIETTNEWSQWCDELAE 96

[Close]

BLAST of IVF0012767.1 vs. ExPASy TrEMBL
Match: A0A5A7U3B3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00460 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-12
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 1   MKNCDDIDDVDEGDSVYVKITITEDIQYIETTNEWSQWCDELAEVMFKEW 51
           M  C+D+DDVDEGDS Y  IT +EDIQYIETTNEWSQW D+LAE MF +W
Sbjct: 315 MTYCEDVDDVDEGDSTYATITASEDIQYIETTNEWSQWRDDLAESMFTDW 364

[Close]

BLAST of IVF0012767.1 vs. ExPASy TrEMBL
Match: A0A1S4E0Z9 (uncharacterized protein LOC107991461 OS=Cucumis melo OX=3656 GN=LOC107991461 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-12
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 5   DDIDDVDEGDSVYVKITITEDIQYIETTNEWSQWCDELAEVMFKEW 51
           DD+DDVDEGDS Y   T TEDI YIETTNEWSQWCDELAE MF +W
Sbjct: 107 DDVDDVDEGDSAYAMTTATEDIHYIETTNEWSQWCDELAESMFIDW 152

[Close]

BLAST of IVF0012767.1 vs. ExPASy TrEMBL
Match: A0A5A7UNF3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold778G00270 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.9e-12
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 1  MKNCDDIDDVDEGDSVYVKITITEDIQYIETTNEWSQWCDELAEVMFKEW 51
          M NC+DIDDVDEGDS Y   T  +DIQYI+TTNEWSQW DELA+ MF EW
Sbjct: 1  MTNCEDIDDVDEGDSAYATTTTPKDIQYIKTTNEWSQWRDELAKAMFTEW 50

[Close]

BLAST of IVF0012767.1 vs. ExPASy TrEMBL
Match: A0A5D3BQ46 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001550 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.9e-12
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 1  MKNCDDIDDVDEGDSVYVKITITEDIQYIETTNEWSQWCDELAEVMFKEW 51
          M  CDD+DDVD+GDS Y   T +EDIQYIETTNEWSQW DELAE MF +W
Sbjct: 1  MTYCDDVDDVDKGDSTYATATTSEDIQYIETTNEWSQWRDELAESMFTDW 50

[Close]

BLAST of IVF0012767.1 vs. NCBI nr
Match: KAA0048337.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01128.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 3.60e-22
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 1  MKNCDDIDDVDEGDSVYVKITITEDIQYIETTNEWSQWCDELAE 44
          MKNCDDIDDVDEGDSVYV ITITEDIQYIETTNEWSQWCDELAE
Sbjct: 53 MKNCDDIDDVDEGDSVYVTITITEDIQYIETTNEWSQWCDELAE 96

[Close]

BLAST of IVF0012767.1 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 2.02e-18
Identity = 37/50 (74.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 1  MKNCDDIDDVDEGDSVYVKITITEDIQYIETTNEWSQWCDELAEVMFKEW 50
          M  CDDIDDVDEGDS Y   T +EDI YIETTNEWSQW DELAE MF +W
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDW 50

[Close]

BLAST of IVF0012767.1 vs. NCBI nr
Match: KAA0062284.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.12e-17
Identity = 37/50 (74.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 1   MKNCDDIDDVDEGDSVYVKITITEDIQYIETTNEWSQWCDELAEVMFKEW 50
           M  CDDIDD DEGDS Y   T +EDIQYIETTNEWSQW D+LAE MF EW
Sbjct: 53  MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEW 102

[Close]

BLAST of IVF0012767.1 vs. NCBI nr
Match: TYK04228.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 1.66e-17
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 1  MKNCDDIDDVDEGDSVYVKITITEDIQYIETTNEWSQWCDELAEVMFKEW 50
          M  CD++DD DEGDS Y   T +EDIQYIETTNEWSQW D+LAE MF EW
Sbjct: 1  MTYCDEVDDKDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEW 50

[Close]

BLAST of IVF0012767.1 vs. NCBI nr
Match: KAA0036983.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK21222.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 1.66e-17
Identity = 36/50 (72.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 1  MKNCDDIDDVDEGDSVYVKITITEDIQYIETTNEWSQWCDELAEVMFKEW 50
          M NCDDIDDVDEGDS Y   T  EDIQYIET N+WSQW  ELAE MF +W
Sbjct: 1  MTNCDDIDDVDEGDSAYTTTTAVEDIQYIETKNKWSQWRGELAEAMFIKW 50

The following BLAST results are available for this feature:

BLAST of IVF0012767.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012767.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U269	4.3e-16	97.73	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U3B3	1.7e-12	72.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4E0Z9	2.2e-12	78.26	uncharacterized protein LOC107991461 OS=Cucumis melo OX=3656 GN=LOC107991461 PE=...	[more]
A0A5A7UNF3	2.9e-12	72.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BQ46	2.9e-12	72.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0012767.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048337.1	3.60e-22	97.73	retrotransposon protein [Cucumis melo var. makuwa] >TYK01128.1 retrotransposon p...	[more]
KAA0054051.1	2.02e-18	74.00	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p...	[more]
KAA0062284.1	1.12e-17	74.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04228.1	1.66e-17	70.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036983.1	1.66e-17	72.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK21222.1 retrotransposon p...	[more]

BLAST of IVF0012767.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0012767	IVF0012767	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0012767.1-exon	IVF0012767.1-exon-chr04:23213066..23213218	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0012767.1-cds	IVF0012767.1-cds-chr04:23213066..23213218	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0012767.1	IVF0012767.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding