IVF0012363.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0012363.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Signaling peptide TAXIMIN 1
Location	chr05: 3310004 .. 3310358 (-)
Sequence length	234
RNA-Seq Expression	IVF0012363.1
Synteny	IVF0012363.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTGTGGAGATGGCGATTGTAGGCCTCTCGGCTTCTTGCTTGGCTTGCCTTTTGCTTTCGTTTCTCTTCTCCTTTCCATTATCGGCGTAATTATATGGATTGTGGGGTAAATTTCTCGAAACCCATTTCAATTTTAGCTTCTGGGTATTTCTGATTTGGTTTTTTTATTTCTTTTTAATTTGTTTCCTTTCCATTTATCTCTGTTTCCTGTGGTTTTTTGGGTGCAGATTGACGCTTACTTGCATATGTCCTTGTTGTTTGTGCTTAACGGTGATAGTGGAGCTTGCTTTGGAGCTGATCAAAGCCCCATTTCATGTCATGGAGTGGTTCACCTCTCAGATTCCTTGTTGA

mRNA sequence

ATGTGTTGTGGAGATGGCGATTGTAGGCCTCTCGGCTTCTTGCTTGGCTTGCCTTTTGCTTTCGTTTCTCTTCTCCTTTCCATTATCGGCGTAATTATATGGATTGTGGGATTGACGCTTACTTGCATATGTCCTTGTTGTTTGTGCTTAACGGTGATAGTGGAGCTTGCTTTGGAGCTGATCAAAGCCCCATTTCATGTCATGGAGTGGTTCACCTCTCAGATTCCTTGTTGA

Coding sequence (CDS)

ATGTGTTGTGGAGATGGCGATTGTAGGCCTCTCGGCTTCTTGCTTGGCTTGCCTTTTGCTTTCGTTTCTCTTCTCCTTTCCATTATCGGCGTAATTATATGGATTGTGGGATTGACGCTTACTTGCATATGTCCTTGTTGTTTGTGCTTAACGGTGATAGTGGAGCTTGCTTTGGAGCTGATCAAAGCCCCATTTCATGTCATGGAGTGGTTCACCTCTCAGATTCCTTGTTGA

Protein sequence

MCCGDGDCRPLGFLLGLPFAFVSLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALELIKAPFHVMEWFTSQIPC

Homology

[Close]

BLAST of IVF0012363.1 vs. ExPASy Swiss-Prot
Match: O82275 (Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 6.0e-30
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL 60
          MC  DGDCRPLGFLLGLPFAF+SLLLSIIGVIIWIVGL L+CICPCCLC+TV+VE+A+ L
Sbjct: 1  MC--DGDCRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGL 60

Query: 61 IKAPFHVMEWFTSQIPC 78
          IKAP HVMEWF S+IPC
Sbjct: 61 IKAPIHVMEWFMSKIPC 75

[Close]

BLAST of IVF0012363.1 vs. ExPASy Swiss-Prot
Match: Q1G309 (Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-20
Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 6  GDCRPLGFLLGLPFAFVSLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALELIKAPF 65
          GDCRPLGFL+GLPFA V+L+L+++G +IWI+G  L+C+CPCC C   +   A++LIK P 
Sbjct: 2  GDCRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLPI 61

Query: 66 HVMEWFTSQIPC 78
           V+ WFT  IPC
Sbjct: 62 KVLRWFTHSIPC 73

[Close]

BLAST of IVF0012363.1 vs. ExPASy TrEMBL
Match: A0A1S3BLY0 (uncharacterized protein LOC103491288 OS=Cucumis melo OX=3656 GN=LOC103491288 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 9.8e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL 60
          MCCGDGDCRPLGFLLGLPFAFVSLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFVSLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL 60

Query: 61 IKAPFHVMEWFTSQIPC 78
          IKAPFHVMEWFTSQIPC
Sbjct: 61 IKAPFHVMEWFTSQIPC 77

[Close]

BLAST of IVF0012363.1 vs. ExPASy TrEMBL
Match: A0A0A0KGH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419460 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.7e-35
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL 60
          MCCGDGDCRPLGFLLGLPFAFVSL+LSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL 60

Query: 61 IKAPFHVMEWFTSQIPC 78
          IKAPFHVMEWFTSQIPC
Sbjct: 61 IKAPFHVMEWFTSQIPC 77

[Close]

BLAST of IVF0012363.1 vs. ExPASy TrEMBL
Match: A0A6J1ER78 (uncharacterized protein LOC111437071 OS=Cucurbita moschata OX=3662 GN=LOC111437071 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 71/77 (92.21%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL 60
          MCCGDGDCRPLGFLLGLPFAFVSL+LS++GVIIWIVGLTL+CICPCCLCLTVIVELALEL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTLSCICPCCLCLTVIVELALEL 60

Query: 61 IKAPFHVMEWFTSQIPC 78
          IKAP HVM+WFTSQIPC
Sbjct: 61 IKAPIHVMQWFTSQIPC 77

[Close]

BLAST of IVF0012363.1 vs. ExPASy TrEMBL
Match: A0A6J1GJJ0 (uncharacterized protein LOC111454865 OS=Cucurbita moschata OX=3662 GN=LOC111454865 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL 60
          MCCGDGDCRPLGFLLGLPFAF+SL+LSIIGVIIWIVGLTLTCICPCCLCLTVIVELAL L
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFLSLILSIIGVIIWIVGLTLTCICPCCLCLTVIVELALGL 60

Query: 61 IKAPFHVMEWFTSQIPC 78
          IKAP HVMEWFTSQIPC
Sbjct: 61 IKAPIHVMEWFTSQIPC 77

[Close]

BLAST of IVF0012363.1 vs. ExPASy TrEMBL
Match: A0A6J1I283 (uncharacterized protein LOC111468358 OS=Cucurbita maxima OX=3661 GN=LOC111468358 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.7e-33
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL 60
          MCCGDGDCRPLGFLLGLPFAF+SL+LSI+GVIIWIVGLTLTCICPCCLCLTVIVE+AL L
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFLSLILSIVGVIIWIVGLTLTCICPCCLCLTVIVEIALGL 60

Query: 61 IKAPFHVMEWFTSQIPC 78
          IKAP HVMEWFTSQIPC
Sbjct: 61 IKAPIHVMEWFTSQIPC 77

[Close]

BLAST of IVF0012363.1 vs. NCBI nr
Match: XP_008449391.1 (PREDICTED: uncharacterized protein LOC103491288 [Cucumis melo])

HSP 1 Score: 156 bits (395), Expect = 4.79e-48
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL 60
          MCCGDGDCRPLGFLLGLPFAFVSLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFVSLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL 60

Query: 61 IKAPFHVMEWFTSQIPC 77
          IKAPFHVMEWFTSQIPC
Sbjct: 61 IKAPFHVMEWFTSQIPC 77

[Close]

BLAST of IVF0012363.1 vs. NCBI nr
Match: XP_004140113.1 (signaling peptide TAXIMIN 1 [Cucumis sativus] >KGN47949.1 hypothetical protein Csa_003666 [Cucumis sativus])

HSP 1 Score: 155 bits (393), Expect = 9.68e-48
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL 60
          MCCGDGDCRPLGFLLGLPFAFVSL+LSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL 60

Query: 61 IKAPFHVMEWFTSQIPC 77
          IKAPFHVMEWFTSQIPC
Sbjct: 61 IKAPFHVMEWFTSQIPC 77

[Close]

BLAST of IVF0012363.1 vs. NCBI nr
Match: XP_038888035.1 (signaling peptide TAXIMIN 1 [Benincasa hispida] >XP_038888036.1 signaling peptide TAXIMIN 1 [Benincasa hispida])

HSP 1 Score: 153 bits (386), Expect = 1.13e-46
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL 60
          MCCGDGDCRPLGFLLGLPFAF+SLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL 60

Query: 61 IKAPFHVMEWFTSQIPC 77
          IKAP HVMEWFTSQIPC
Sbjct: 61 IKAPIHVMEWFTSQIPC 77

[Close]

BLAST of IVF0012363.1 vs. NCBI nr
Match: XP_022930666.1 (uncharacterized protein LOC111437071 [Cucurbita moschata] >XP_022930667.1 uncharacterized protein LOC111437071 [Cucurbita moschata] >XP_023530442.1 uncharacterized protein LOC111793011 [Cucurbita pepo subsp. pepo] >XP_023530443.1 uncharacterized protein LOC111793011 [Cucurbita pepo subsp. pepo] >KAG7022960.1 hypothetical protein SDJN02_16696 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149 bits (377), Expect = 2.68e-45
Identity = 71/77 (92.21%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL 60
          MCCGDGDCRPLGFLLGLPFAFVSL+LS++GVIIWIVGLTL+CICPCCLCLTVIVELALEL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTLSCICPCCLCLTVIVELALEL 60

Query: 61 IKAPFHVMEWFTSQIPC 77
          IKAP HVM+WFTSQIPC
Sbjct: 61 IKAPIHVMQWFTSQIPC 77

[Close]

BLAST of IVF0012363.1 vs. NCBI nr
Match: XP_022952103.1 (uncharacterized protein LOC111454865 [Cucurbita moschata] >XP_023554082.1 uncharacterized protein LOC111811456 [Cucurbita pepo subsp. pepo] >KAG6572406.1 Signaling peptide TAXIMIN 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149 bits (377), Expect = 2.68e-45
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL 60
          MCCGDGDCRPLGFLLGLPFAF+SL+LSIIGVIIWIVGLTLTCICPCCLCLTVIVELAL L
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFLSLILSIIGVIIWIVGLTLTCICPCCLCLTVIVELALGL 60

Query: 61 IKAPFHVMEWFTSQIPC 77
          IKAP HVMEWFTSQIPC
Sbjct: 61 IKAPIHVMEWFTSQIPC 77

[Close]

BLAST of IVF0012363.1 vs. TAIR 10
Match: AT2G31090.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20562.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 131.0 bits (328), Expect = 4.2e-31
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL 60
          MC  DGDCRPLGFLLGLPFAF+SLLLSIIGVIIWIVGL L+CICPCCLC+TV+VE+A+ L
Sbjct: 1  MC--DGDCRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGL 60

Query: 61 IKAPFHVMEWFTSQIPC 78
          IKAP HVMEWF S+IPC
Sbjct: 61 IKAPIHVMEWFMSKIPC 75

[Close]

BLAST of IVF0012363.1 vs. TAIR 10
Match: AT2G20562.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31090.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 99.8 bits (247), Expect = 1.0e-21
Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 6  GDCRPLGFLLGLPFAFVSLLLSIIGVIIWIVGLTLTCICPCCLCLTVIVELALELIKAPF 65
          GDCRPLGFL+GLPFA V+L+L+++G +IWI+G  L+C+CPCC C   +   A++LIK P 
Sbjct: 2  GDCRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLPI 61

Query: 66 HVMEWFTSQIPC 78
           V+ WFT  IPC
Sbjct: 62 KVLRWFTHSIPC 73

The following BLAST results are available for this feature:

BLAST of IVF0012363.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82275	6.0e-30	83.12	Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2	[more]
Q1G309	1.5e-20	56.94	Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1	[more]

BLAST of IVF0012363.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BLY0	9.8e-36	100.00	uncharacterized protein LOC103491288 OS=Cucumis melo OX=3656 GN=LOC103491288 PE=...	[more]
A0A0A0KGH9	1.7e-35	98.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419460 PE=4 SV=1	[more]
A0A6J1ER78	1.2e-33	92.21	uncharacterized protein LOC111437071 OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]
A0A6J1GJJ0	1.2e-33	94.81	uncharacterized protein LOC111454865 OS=Cucurbita moschata OX=3662 GN=LOC1114548...	[more]
A0A6J1I283	2.7e-33	92.21	uncharacterized protein LOC111468358 OS=Cucurbita maxima OX=3661 GN=LOC111468358...	[more]

BLAST of IVF0012363.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449391.1	4.79e-48	100.00	PREDICTED: uncharacterized protein LOC103491288 [Cucumis melo]	[more]
XP_004140113.1	9.68e-48	98.70	signaling peptide TAXIMIN 1 [Cucumis sativus] >KGN47949.1 hypothetical protein C...	[more]
XP_038888035.1	1.13e-46	97.40	signaling peptide TAXIMIN 1 [Benincasa hispida] >XP_038888036.1 signaling peptid...	[more]
XP_022930666.1	2.68e-45	92.21	uncharacterized protein LOC111437071 [Cucurbita moschata] >XP_022930667.1 unchar...	[more]
XP_022952103.1	2.68e-45	94.81	uncharacterized protein LOC111454865 [Cucurbita moschata] >XP_023554082.1 unchar...	[more]

BLAST of IVF0012363.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31090.1	4.2e-31	83.12	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G20562.1	1.0e-21	56.94	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33834:SF2	SIGNALING PEPTIDE TAXIMIN 1	coord: 1..77
None	No IPR available	PANTHER	PTHR33834	SIGNALING PEPTIDE TAXIMIN 2	coord: 1..77

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0012363	IVF0012363	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0012363.1-exon	IVF0012363.1-exon-chr05:3310004..3310127	exon
IVF0012363.1-exon	IVF0012363.1-exon-chr05:3310249..3310358	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0012363.1-cds	IVF0012363.1-cds-chr05:3310004..3310127	CDS
IVF0012363.1-cds	IVF0012363.1-cds-chr05:3310249..3310358	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0012363.1	IVF0012363.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane