IVF0012193.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0012193.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	50S ribosomal protein L27-like
Location	chr05: 23446210 .. 23446871 (+)
Sequence length	447
RNA-Seq Expression	IVF0012193.1
Synteny	IVF0012193.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTAATATTGCGACCACATTTTGCAAGCGACTGAATGTCAAGGATTTGGTGACCAATGTTCCTGTATATAGCAGTTTTAGTGGTAAGAATGGTTCATCTAGAACATGTTGTACAAACATGTTGTACTTATCATGCTAATTTGTCTTCATAGTGATTACATTGTTTGTTTAATCTAATCTCAGATGGAGCTACTGCTGGATTAAACTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGATCGACTAAAAATGGACGAGACTCAAAACCCAAGAATCTTGGTGTAAAGAAATTTGGTGGGGAGGTGAGTGGCAGGACAAACAAAAATCACATTGTCATAAACTTGCACTGAAATTTCTATTTATCGAAGCGGTTTTGTTGTGAACTTATTTACGGAGAGTTATTCCTTCTGGATACAGAGAGTTATTCCCGGTAACATTATTGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTGGGAATAGGGAAGGATCACACTCTTTTTGCCCTTAAAGAAGGCAATGTCAAGTTCGAAAAGCACAAGCTGAGCGGACGTAAGTGGGTGCACGTTATACCAAAGGATGGGCACGTTCTGCATCCTGTTTATGCAACTACTTCTACTTCTCCACAATTGAAGACAACAGCATAA

mRNA sequence

ATGCTTAATATTGCGACCACATTTTGCAAGCGACTGAATGTCAAGGATTTGGTGACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTACTGCTGGATTAAACTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGATCGACTAAAAATGGACGAGACTCAAAACCCAAGAATCTTGGTGTAAAGAAATTTGGTGGGGAGAGAGTTATTCCCGGTAACATTATTGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTGGGAATAGGGAAGGATCACACTCTTTTTGCCCTTAAAGAAGGCAATGTCAAGTTCGAAAAGCACAAGCTGAGCGGACGTAAGTGGGTGCACGTTATACCAAAGGATGGGCACGTTCTGCATCCTGTTTATGCAACTACTTCTACTTCTCCACAATTGAAGACAACAGCATAA

Coding sequence (CDS)

ATGCTTAATATTGCGACCACATTTTGCAAGCGACTGAATGTCAAGGATTTGGTGACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTACTGCTGGATTAAACTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGATCGACTAAAAATGGACGAGACTCAAAACCCAAGAATCTTGGTGTAAAGAAATTTGGTGGGGAGAGAGTTATTCCCGGTAACATTATTGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTGGGAATAGGGAAGGATCACACTCTTTTTGCCCTTAAAGAAGGCAATGTCAAGTTCGAAAAGCACAAGCTGAGCGGACGTAAGTGGGTGCACGTTATACCAAAGGATGGGCACGTTCTGCATCCTGTTTATGCAACTACTTCTACTTCTCCACAATTGAAGACAACAGCATAA

Protein sequence

MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKWVHVIPKDGHVLHPVYATTSTSPQLKTTA

Homology

[Close]

BLAST of IVF0012193.1 vs. ExPASy Swiss-Prot
Match: A9IM57 (50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) OX=382640 GN=rpmA PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.7e-26
Identity = 59/83 (71.08%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGESVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGNVKFEKHKLSGRKWVHVIP 126
           L EG V F++ K   R +V VIP
Sbjct: 62  LSEGKVSFQR-KAGNRSYVSVIP 83

[Close]

BLAST of IVF0012193.1 vs. ExPASy Swiss-Prot
Match: Q6G507 (50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) OX=283166 GN=rpmA PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.9e-25
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGNVKFEKHKLSGRKWVHVIP 126
           L +G V F++ K + R +V VIP
Sbjct: 62  LSKGMVSFQR-KANNRSYVSVIP 83

[Close]

BLAST of IVF0012193.1 vs. ExPASy Swiss-Prot
Match: B4RZH4 (50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) OX=1774373 GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.5e-25
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GSTKNGRDS+ K LGVK+FGGE V+ GNIIVRQRGTRFH GD +GIGKDHTLFA
Sbjct: 2   AHKKAGGSTKNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTRFHAGDNMGIGKDHTLFA 61

Query: 103 LKEGNVKFEKHKLSGRKWVHVI 125
           LK+G V+F+      RK+V ++
Sbjct: 62  LKDGKVQFDVKGPKNRKFVSIV 83

[Close]

BLAST of IVF0012193.1 vs. ExPASy Swiss-Prot
Match: A6UDV3 (50S ribosomal protein L27 OS=Sinorhizobium medicae (strain WSM419) OX=366394 GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.5e-25
Identity = 57/84 (67.86%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGT++HPG  VG+GKDHT+FA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGENVIAGNIIVRQRGTKWHPGANVGLGKDHTIFA 61

Query: 103 LKEGNVKFEKHKLSGRKWVHVIPK 127
           L  GNV F K K +GR +V V+PK
Sbjct: 62  LTAGNVDFRK-KANGRVYVSVMPK 84

[Close]

BLAST of IVF0012193.1 vs. ExPASy Swiss-Prot
Match: Q92LB7 (50S ribosomal protein L27 OS=Rhizobium meliloti (strain 1021) OX=266834 GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.5e-25
Identity = 57/84 (67.86%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VIPGNIIVRQRGT++H G  VG+GKDHT+FA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIPGNIIVRQRGTKWHAGANVGLGKDHTIFA 61

Query: 103 LKEGNVKFEKHKLSGRKWVHVIPK 127
           L  GNV F K K +GR +V V+PK
Sbjct: 62  LTTGNVDFRK-KANGRVYVSVMPK 84

[Close]

BLAST of IVF0012193.1 vs. ExPASy TrEMBL
Match: A0A5A7TXR2 (50S ribosomal protein L27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00530 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 9.6e-80
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHVIPKDGHVLHPVYATTSTSPQLKTTA 149
           VHVIPKDGHVLHPVYATTSTSPQLKTTA
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTTA 148

[Close]

BLAST of IVF0012193.1 vs. ExPASy TrEMBL
Match: A0A1S4E0A6 (50S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 9.6e-80
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHVIPKDGHVLHPVYATTSTSPQLKTTA 149
           VHVIPKDGHVLHPVYATTSTSPQLKTTA
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTTA 148

[Close]

BLAST of IVF0012193.1 vs. ExPASy TrEMBL
Match: A0A0A0LIQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G023860 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.2e-74
Identity = 141/148 (95.27%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDS PK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120
            LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEK+KLSGRKW
Sbjct: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120

Query: 121 VHVIPKDGHVLHPVYATTSTSPQLKTTA 149
           VHVIPK+GHVLHPVY TTSTS QLKT A
Sbjct: 121 VHVIPKEGHVLHPVYETTSTSLQLKTAA 148

[Close]

BLAST of IVF0012193.1 vs. ExPASy TrEMBL
Match: A0A6J1I390 (uncharacterized protein LOC111469515 OS=Cucurbita maxima OX=3661 GN=LOC111469515 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.6e-74
Identity = 137/148 (92.57%), Postives = 142/148 (95.95%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDG+  GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHVIPKDGHVLHPVYATTSTSPQLKTTA 149
           VH+IPK+GHVLHPVYATT  SP+LKT A
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKTAA 148

[Close]

BLAST of IVF0012193.1 vs. ExPASy TrEMBL
Match: A0A6J1HP14 (uncharacterized protein LOC111464705 OS=Cucurbita moschata OX=3662 GN=LOC111464705 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.1e-73
Identity = 135/146 (92.47%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSF DG+  GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHVIPKDGHVLHPVYATTSTSPQLKT 147
           VH+IPK+GHVLHPVYATT  SP+LKT
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKT 146

[Close]

BLAST of IVF0012193.1 vs. NCBI nr
Match: XP_016901663.1 (PREDICTED: 50S ribosomal protein L27-like [Cucumis melo] >KAA0047990.1 50S ribosomal protein L27-like [Cucumis melo var. makuwa])

HSP 1 Score: 306 bits (783), Expect = 5.72e-105
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHVIPKDGHVLHPVYATTSTSPQLKTTA 148
           VHVIPKDGHVLHPVYATTSTSPQLKTTA
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTTA 148

[Close]

BLAST of IVF0012193.1 vs. NCBI nr
Match: XP_004139171.1 (uncharacterized protein LOC101207653 [Cucumis sativus] >KGN60919.1 hypothetical protein Csa_023482 [Cucumis sativus])

HSP 1 Score: 289 bits (739), Expect = 2.94e-98
Identity = 141/148 (95.27%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDS PK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120
            LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEK+KLSGRKW
Sbjct: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120

Query: 121 VHVIPKDGHVLHPVYATTSTSPQLKTTA 148
           VHVIPK+GHVLHPVY TTSTS QLKT A
Sbjct: 121 VHVIPKEGHVLHPVYETTSTSLQLKTAA 148

[Close]

BLAST of IVF0012193.1 vs. NCBI nr
Match: XP_022970580.1 (uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharacterized protein LOC111469515 [Cucurbita maxima])

HSP 1 Score: 287 bits (734), Expect = 1.70e-97
Identity = 137/148 (92.57%), Postives = 142/148 (95.95%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDG+  GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHVIPKDGHVLHPVYATTSTSPQLKTTA 148
           VH+IPK+GHVLHPVYATT  SP+LKT A
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKTAA 148

[Close]

BLAST of IVF0012193.1 vs. NCBI nr
Match: XP_038877023.1 (50S ribosomal protein L27-like [Benincasa hispida])

HSP 1 Score: 285 bits (729), Expect = 9.85e-97
Identity = 136/147 (92.52%), Postives = 141/147 (95.92%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVT VPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTTVPVYSSFSDGAATGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120
           NLGVKKFGGERV PGNIIVRQRGTRFHPGDYVG+GKDHTLFALKEG V FEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALKEGCVNFEKHKLSGRKW 120

Query: 121 VHVIPKDGHVLHPVYATTSTSPQLKTT 147
           VHVIPK+GHVLHP+YATTSTSP+LKTT
Sbjct: 121 VHVIPKEGHVLHPIYATTSTSPELKTT 147

[Close]

BLAST of IVF0012193.1 vs. NCBI nr
Match: XP_022964702.1 (uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964704.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_023520403.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo] >XP_023520404.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo] >KAG7019178.1 rpmA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 283 bits (725), Expect = 4.01e-96
Identity = 135/146 (92.47%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSF DG+  GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHVIPKDGHVLHPVYATTSTSPQLKT 146
           VH+IPK+GHVLHPVYATT  SP+LKT
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKT 146

[Close]

BLAST of IVF0012193.1 vs. TAIR 10
Match: AT5G15220.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 223.0 bits (567), Expect = 1.6e-58
Identity = 106/151 (70.20%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y  SS SDG+++GL+L+F+RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYSGSSISDGSSSGLSLVFKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHVIPKDGHVLHPVY--ATTSTSPQLKTTA 149
           W+HV P  GHVLHP+Y  A  + S +LKT +
Sbjct: 124 WIHVDPTGGHVLHPIYTKAAAAQSTKLKTAS 154

[Close]

BLAST of IVF0012193.1 vs. TAIR 10
Match: AT2G16930.2 (Ribosomal protein L27 family protein )

HSP 1 Score: 218.0 bits (554), Expect = 5.1e-57
Identity = 104/151 (68.87%), Postives = 126/151 (83.44%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y  SS SDG+++GL+L+ +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHVIPKDGHVLHPVY--ATTSTSPQLKTTA 149
           W+HV P  GHVLHP+Y  A  + S +L T +
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNTAS 154

[Close]

BLAST of IVF0012193.1 vs. TAIR 10
Match: AT2G16930.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 218.0 bits (554), Expect = 5.1e-57
Identity = 104/151 (68.87%), Postives = 126/151 (83.44%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y  SS SDG+++GL+L+ +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHVIPKDGHVLHPVY--ATTSTSPQLKTTA 149
           W+HV P  GHVLHP+Y  A  + S +L T +
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNTAS 154

[Close]

BLAST of IVF0012193.1 vs. TAIR 10
Match: AT2G16930.3 (Ribosomal protein L27 family protein )

HSP 1 Score: 218.0 bits (554), Expect = 5.1e-57
Identity = 104/151 (68.87%), Postives = 126/151 (83.44%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y  SS SDG+++GL+L+ +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHVIPKDGHVLHPVY--ATTSTSPQLKTTA 149
           W+HV P  GHVLHP+Y  A  + S +L T +
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNTAS 154

[Close]

BLAST of IVF0012193.1 vs. TAIR 10
Match: AT5G40950.1 (ribosomal protein large subunit 27 )

HSP 1 Score: 95.5 bits (236), Expect = 3.8e-20
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+FH G  VGIGKDHT+F+
Sbjct: 59  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFS 118

Query: 103 LKEGNVKFEKHKLSGRKWVHVIPKD 128
           L +G VKFEK     RK + V P++
Sbjct: 119 LIDGLVKFEKFG-PDRKKISVYPRE 142

The following BLAST results are available for this feature:

BLAST of IVF0012193.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9IM57	7.7e-26	71.08	50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)...	[more]
Q6G507	2.9e-25	69.88	50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 ...	[more]
B4RZH4	6.5e-25	67.07	50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 11...	[more]
A6UDV3	6.5e-25	67.86	50S ribosomal protein L27 OS=Sinorhizobium medicae (strain WSM419) OX=366394 GN=...	[more]
Q92LB7	8.5e-25	67.86	50S ribosomal protein L27 OS=Rhizobium meliloti (strain 1021) OX=266834 GN=rpmA ...	[more]

BLAST of IVF0012193.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXR2	9.6e-80	100.00	50S ribosomal protein L27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S4E0A6	9.6e-80	100.00	50S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1	[more]
A0A0A0LIQ3	1.2e-74	95.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G023860 PE=3 SV=1	[more]
A0A6J1I390	4.6e-74	92.57	uncharacterized protein LOC111469515 OS=Cucurbita maxima OX=3661 GN=LOC111469515...	[more]
A0A6J1HP14	5.1e-73	92.47	uncharacterized protein LOC111464705 OS=Cucurbita moschata OX=3662 GN=LOC1114647...	[more]

BLAST of IVF0012193.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901663.1	5.72e-105	100.00	PREDICTED: 50S ribosomal protein L27-like [Cucumis melo] >KAA0047990.1 50S ribos...	[more]
XP_004139171.1	2.94e-98	95.27	uncharacterized protein LOC101207653 [Cucumis sativus] >KGN60919.1 hypothetical ...	[more]
XP_022970580.1	1.70e-97	92.57	uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharac...	[more]
XP_038877023.1	9.85e-97	92.52	50S ribosomal protein L27-like [Benincasa hispida]	[more]
XP_022964702.1	4.01e-96	92.47	uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 unchar...	[more]

BLAST of IVF0012193.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15220.1	1.6e-58	70.20	Ribosomal protein L27 family protein	[more]
AT2G16930.2	5.1e-57	68.87	Ribosomal protein L27 family protein	[more]
AT2G16930.1	5.1e-57	68.87	Ribosomal protein L27 family protein	[more]
AT2G16930.3	5.1e-57	68.87	Ribosomal protein L27 family protein	[more]
AT5G40950.1	3.8e-20	60.00	ribosomal protein large subunit 27	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001684	Ribosomal protein L27	PRINTS	PR00063	RIBOSOMALL27	coord: 95..119 score: 47.08 coord: 45..69 score: 63.85 coord: 70..94 score: 57.38
IPR001684	Ribosomal protein L27	PFAM	PF01016	Ribosomal_L27	coord: 43..123 e-value: 3.5E-37 score: 126.3
IPR001684	Ribosomal protein L27	TIGRFAM	TIGR00062	TIGR00062	coord: 43..123 e-value: 4.9E-35 score: 117.4
IPR001684	Ribosomal protein L27	PANTHER	PTHR15893	RIBOSOMAL PROTEIN L27	coord: 3..146
IPR001684	Ribosomal protein L27	HAMAP	MF_00539	Ribosomal_L27	coord: 42..126 score: 26.032824
None	No IPR available	GENE3D	2.40.50.100		coord: 47..144 e-value: 1.5E-32 score: 113.9
None	No IPR available	PANTHER	PTHR15893:SF10	50S RIBOSOMAL PROTEIN L27	coord: 3..146
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 43..123
IPR018261	Ribosomal protein L27, conserved site	PROSITE	PS00831	RIBOSOMAL_L27	coord: 75..89

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0012193	IVF0012193	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0012193.1-exon	IVF0012193.1-exon-chr05:23446210..23446294	exon
IVF0012193.1-exon	IVF0012193.1-exon-chr05:23446395..23446519	exon
IVF0012193.1-exon	IVF0012193.1-exon-chr05:23446635..23446871	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0012193.1-cds	IVF0012193.1-cds-chr05:23446210..23446294	CDS
IVF0012193.1-cds	IVF0012193.1-cds-chr05:23446395..23446519	CDS
IVF0012193.1-cds	IVF0012193.1-cds-chr05:23446635..23446871	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0012193.1	IVF0012193.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003735	structural constituent of ribosome