IVF0011311.2 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0011311.2
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	La-related protein 6 isoform 1
Location	chr05: 20434742 .. 20436990 (-)
Sequence length	991
RNA-Seq Expression	IVF0011311.2
Synteny	IVF0011311.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGAAATCCTTCCACGTGTACATCTCACAATCATGAAAATTTAGAACCAACAAAATCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCCTCCTTCTTCCCCCCATTCTCAATTCTCCACAAAAACAAAAACAAAAAAAAATCTTAATCCCTTATTCTACATCCTTCCCTTTCCGCCAATTCTCCTCACCATGTCATTACCTTCCTCCCAACTCAGTTTTCTCTCCACCGCCTTCTCTTTCTCCTTCTCCCCTCCACGGGCCCACAACCTTCGTCTCCTCTATTCTTCCAGTGCCGTCGTCTCTTGCAAACTCCCTCCCGCTTCCGATGATCCCAAGTAAGTTCGGTTGCCTCTTTCTTTTTTTTTTTTATTTTTTTTAGTTTGTTTAGGTTTCTGATTGGTAGATTGTGATGTGGTGGATTATTGAACAGGGGAAATGAGAATCGGGTCGCGAAGCTTGCGATTGTTACTTTAATGGCTGGGATTCTGACATTGGGATCGGTTCATGATGCTTCCGCCGCCAAGACTGGCGGCCGAGTCGGCGGTCAGGCCTTCCGTTCGGCGGCTCCTCGGCCGTCGTCCCCGAGAATCAACAATAATTCTAGGTAAACAAAGATTTGGTAATATTTTGGCTTTGAATTGTGTTATAGTTGGGTTGATCAATTTGGTTCATACTTAATGAGTGGATACCCACTTGAGTAAGTGTGTCAGTGTGAAAAATTAGCTATATACATTAAATATACATCTCATATACATATGGATGTTGCTTGTATAATATATATATATATATATATAGCATTTTGGTCCCTATGCTTTAGGTCGATTCAACTTTAGTCTCTATACTTTCAATATAACTTATACTTAGTTCTAATCTTTATTGAAATTGGTCAAGTAATACTACTCTTTTAGACAAGGGGAGGAGATATGATACTGAATATGTATTCTACAATGGATGAATAAATTTTTTTCTTGAAAGAGAAATTAATAACAAATTAACGATAAAGACTAAATTTAAGATTTATTGAAGTGATTAAAATTGAACCTTTTAAAATATATAGACTAAAATTGAACTAAATTGCATTAACCATAATAGCATTGATAAATATTTTAAACAATTACTTTACTAAGAAAAGCCTAATAATATTCTTTTTCCTTTTTGGGTTGGGGAGAAATTAATATGTTAGACTTTGTTTCCTCTAATTTGAATTTAGTTTCTTCAACTAAAAGACATAAGGATTTGAACCTAAAATCTCATGTAAAAGAGTGTATAGACCGTTTCTAGTGAACTAAGCATGTGAATGGTAATTTTCATTTATAAACCAAATTGTTTTGCATCAAGTTATCTGGAAGCATTTTGAAGCCTTGCCAACAATCAACTATTTTCAAATGCAAAGGACTAGTTTTTTATATAGGTAGGTGATTGATGTATATGATTTTTATTGGAATGTCTTCAATACGTTATACACTGCTTCAACAATCAAGTATGAAATTTTGCTGTTTGGTCAACAAGTCGAATCCAAGAGTAGTCGTGGTAGAGGTTGTAGGACGACTCCCTCAAAACCTATTTTGAATCCGTATTTACCACATTTATATTATTGACATCTTTTATTTATGGATTAAAGACCTGCACTATTTAAATTTTATTGTCCTCTCCCTACTTGTAGACGCAACTAGCATTGTTAGTAAACCGTGTAAATGTCTGTTTGTTTCTCTATCGATGTACGTACTCTATATTTATTTATTTATTTATTACTCAACAATTTTGCAGGACAAATATATACATAAATCCAAGAGTAGCACCTCCATTAGTAGGTGGCTATGGGTTTGGATATGGTGTGCCATACTATGGTGGATGGGGATGGTCACCATTTTCATTCTTTGCACCTTCCCCAACAGTTGCTGTTGGCATTGGAGGAGGTCTTGATGTTCTTTTCTTCTTCATTTTGCTTGGTTCTGTTGCAGCTTTTGTGAGAAAAATCCTTGGAAGAAGGGAAGCAGATGATGATGATTACTAATGACATTCAAGTCCTTGGATGGAAATGTTGGGTTCATACTTTGTATTCACACTTTTAAACTTTAGCTTTTTAGTGGGAGAGTTTTTCTTTTGTCTTATTTGTATTAGAGGAGATGTTATGTAATTAAAAAGCTTAAATGTATAAAATGTATAGTCAACCTCAGTTAAAATACATGAACTAAAAAAATATTATAACTATTTAAATACCTTTTTCTTATAGTTTTTGTTACTTTTAAA

mRNA sequence

ATTGAAATCCTTCCACGTGTACATCTCACAATCATGAAAATTTAGAACCAACAAAATCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCCTCCTTCTTCCCCCCATTCTCAATTCTCCACAAAAACAAAAACAAAAAAAAATCTTAATCCCTTATTCTACATCCTTCCCTTTCCGCCAATTCTCCTCACCATGTCATTACCTTCCTCCCAACTCAGTTTTCTCTCCACCGCCTTCTCTTTCTCCTTCTCCCCTCCACGGGCCCACAACCTTCGTCTCCTCTATTCTTCCAGTGCCGTCGTCTCTTGCAAACTCCCTCCCGCTTCCGATGATCCCAAGGGAAATGAGAATCGGGTCGCGAAGCTTGCGATTGTTACTTTAATGGCTGGGATTCTGACATTGGGATCGGTTCATGATGCTTCCGCCGCCAAGACTGGCGGCCGAGTCGGCGGTCAGGCCTTCCGTTCGGCGGCTCCTCGGCCGTCGTCCCCGAGAATCAACAATAATTCTAGGACAAATATATACATAAATCCAAGAGTAGCACCTCCATTAGTAGGTGGCTATGGGTTTGGATATGGTGTGCCATACTATGGTGGATGGGGATGGTCACCATTTTCATTCTTTGCACCTTCCCCAACAGTTGCTGTTGGCATTGGAGGAGGTCTTGATGTTCTTTTCTTCTTCATTTTGCTTGGTTCTGTTGCAGCTTTTGTGAGAAAAATCCTTGGAAGAAGGGAAGCAGATGATGATGATTACTAATGACATTCAAGTCCTTGGATGGAAATGTTGGGTTCATACTTTGTATTCACACTTTTAAACTTTAGCTTTTTAGTGGGAGAGTTTTTCTTTTGTCTTATTTGTATTAGAGGAGATGTTATGTAATTAAAAAGCTTAAATGTATAAAATGTATAGTCAACCTCAGTTAAAATACATGAACTAAAAAAATATTATAACTATTTAAATACCTTTTTCTTATAGTTTTTGTTACTTTTAAA

Coding sequence (CDS)

ATGTCATTACCTTCCTCCCAACTCAGTTTTCTCTCCACCGCCTTCTCTTTCTCCTTCTCCCCTCCACGGGCCCACAACCTTCGTCTCCTCTATTCTTCCAGTGCCGTCGTCTCTTGCAAACTCCCTCCCGCTTCCGATGATCCCAAGGGAAATGAGAATCGGGTCGCGAAGCTTGCGATTGTTACTTTAATGGCTGGGATTCTGACATTGGGATCGGTTCATGATGCTTCCGCCGCCAAGACTGGCGGCCGAGTCGGCGGTCAGGCCTTCCGTTCGGCGGCTCCTCGGCCGTCGTCCCCGAGAATCAACAATAATTCTAGGACAAATATATACATAAATCCAAGAGTAGCACCTCCATTAGTAGGTGGCTATGGGTTTGGATATGGTGTGCCATACTATGGTGGATGGGGATGGTCACCATTTTCATTCTTTGCACCTTCCCCAACAGTTGCTGTTGGCATTGGAGGAGGTCTTGATGTTCTTTTCTTCTTCATTTTGCTTGGTTCTGTTGCAGCTTTTGTGAGAAAAATCCTTGGAAGAAGGGAAGCAGATGATGATGATTACTAA

Protein sequence

MSLPSSQLSFLSTAFSFSFSPPRAHNLRLLYSSSAVVSCKLPPASDDPKGNENRVAKLAIVTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAFVRKILGRREADDDDY

Homology

[Close]

BLAST of IVF0011311.2 vs. ExPASy TrEMBL
Match: A0A5A7U097 (La-related protein 6 isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1484G00020 PE=4 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 2.4e-99
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MSLPSSQLSFLSTAFSFSFSPPRAHNLRLLYSSSAVVSCKLPPASDDPKGNENRVAKLAI 60
           MSLPSSQLSFLSTAFSFSFSPPRAHNLRLLYSSSAVVSCKLPPASDDPKGNENRVAKLAI
Sbjct: 1   MSLPSSQLSFLSTAFSFSFSPPRAHNLRLLYSSSAVVSCKLPPASDDPKGNENRVAKLAI 60

Query: 61  VTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRVAPPL 120
           VTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRVAPPL
Sbjct: 61  VTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRVAPPL 120

Query: 121 VGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAFVRKILGR 180
           VGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAFVRKILGR
Sbjct: 121 VGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAFVRKILGR 180

Query: 181 READDDDY 189
           READDDDY
Sbjct: 181 READDDDY 188

[Close]

BLAST of IVF0011311.2 vs. ExPASy TrEMBL
Match: A0A1S3BRQ8 (uncharacterized protein LOC103492785 OS=Cucumis melo OX=3656 GN=LOC103492785 PE=4 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 2.4e-99
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MSLPSSQLSFLSTAFSFSFSPPRAHNLRLLYSSSAVVSCKLPPASDDPKGNENRVAKLAI 60
           MSLPSSQLSFLSTAFSFSFSPPRAHNLRLLYSSSAVVSCKLPPASDDPKGNENRVAKLAI
Sbjct: 1   MSLPSSQLSFLSTAFSFSFSPPRAHNLRLLYSSSAVVSCKLPPASDDPKGNENRVAKLAI 60

Query: 61  VTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRVAPPL 120
           VTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRVAPPL
Sbjct: 61  VTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRVAPPL 120

Query: 121 VGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAFVRKILGR 180
           VGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAFVRKILGR
Sbjct: 121 VGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAFVRKILGR 180

Query: 181 READDDDY 189
           READDDDY
Sbjct: 181 READDDDY 188

[Close]

BLAST of IVF0011311.2 vs. ExPASy TrEMBL
Match: A0A0A0LGT3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060360 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.1e-85
Identity = 170/191 (89.01%), Postives = 179/191 (93.72%), Query Frame = 0


Query: 1   MSLPSSQLSFLSTAFSF-SFS-PPRAHNLRLLYSSSAVVSCKLPPASDDPKGNENRVAKL 60
           MSLPSSQL+FLSTAFSF SFS PPR HNLRLL+SS+ ++SCKLPP S DPKGNENRVA L
Sbjct: 1   MSLPSSQLTFLSTAFSFSSFSPPPRTHNLRLLHSSNPLISCKLPPPSHDPKGNENRVANL 60

Query: 61  AIVTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRVAP 120
           AIVTLMAG+LTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRVAP
Sbjct: 61  AIVTLMAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRVAP 120

Query: 121 PLVGGYGFGYGVPYY-GGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAFVRKI 180
           PL GGYG+GYGVPYY GGWGWSPFSFFAPSP VAVGIGGGLDVLFFFILLG+VAAFVR+I
Sbjct: 121 PL-GGYGYGYGVPYYGGGWGWSPFSFFAPSPAVAVGIGGGLDVLFFFILLGTVAAFVRRI 180

Query: 181 LGRREADDDDY 189
            GRRE DDDDY
Sbjct: 181 FGRREEDDDDY 190

[Close]

BLAST of IVF0011311.2 vs. ExPASy TrEMBL
Match: A0A6J1I348 (uncharacterized protein LOC111468585 OS=Cucurbita maxima OX=3661 GN=LOC111468585 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 1.0e-70
Identity = 146/193 (75.65%), Postives = 162/193 (83.94%), Query Frame = 0


Query: 1   MSLPSSQLSFLSTAFSFSFSPPRAHNLRLLYSSSAVVSCKLPPASDDP----KGNENRVA 60
           MSL SSQLSFLST  SFS +P    +  +L+S   +++ KLPP +D+P    +GNENR+A
Sbjct: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADNPNGLERGNENRLA 60

Query: 61  KLAIVTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRV 120
           KLAIVTL AG+LTLGSVHDASAAKTGGRVGGQAFRSAAPR SSPRINNNSRTNIYINPRV
Sbjct: 61  KLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV 120

Query: 121 APPLVGGYGFGYGVPYY-GGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAFVR 180
           APPLVGGY  GYGVPYY GGWGWSPFSFFAP+P+VAVGIGGG DVL  FI LG+VAAFVR
Sbjct: 121 APPLVGGY--GYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVR 180

Query: 181 KILGRREADDDDY 189
           + LG RE DDDDY
Sbjct: 181 RFLGGREEDDDDY 191

[Close]

BLAST of IVF0011311.2 vs. ExPASy TrEMBL
Match: A0A6J1FDE3 (uncharacterized protein LOC111444353 OS=Cucurbita moschata OX=3662 GN=LOC111444353 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 5.1e-70
Identity = 145/193 (75.13%), Postives = 161/193 (83.42%), Query Frame = 0


Query: 1   MSLPSSQLSFLSTAFSFSFSPPRAHNLRLLYSSSAVVSCKLPPASDDP----KGNENRVA 60
           MSL SSQLSFLST  SFS +P    +  +L+S   +++ KLPP +DDP    +GNENR+A
Sbjct: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLA 60

Query: 61  KLAIVTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRV 120
           KLAIVTL AG+L+LGSVHDASAAKTGGRVGGQAFRSAAPR SSPRINNNSRTNIYINPRV
Sbjct: 61  KLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV 120

Query: 121 APPLVGGYGFGYGVPYY-GGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAFVR 180
           APPLVGGY  GYGVPYY GGWGWSPFSFFAP+P+VAVGIGGG DVL  FI LG+VAAFVR
Sbjct: 121 APPLVGGY--GYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVR 180

Query: 181 KILGRREADDDDY 189
           + LG R  DDDDY
Sbjct: 181 RFLGGRGEDDDDY 191

[Close]

BLAST of IVF0011311.2 vs. NCBI nr
Match: XP_008451528.1 (PREDICTED: uncharacterized protein LOC103492785 [Cucumis melo] >KAA0048618.1 La-related protein 6 isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 370 bits (949), Expect = 5.75e-129
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MSLPSSQLSFLSTAFSFSFSPPRAHNLRLLYSSSAVVSCKLPPASDDPKGNENRVAKLAI 60
           MSLPSSQLSFLSTAFSFSFSPPRAHNLRLLYSSSAVVSCKLPPASDDPKGNENRVAKLAI
Sbjct: 1   MSLPSSQLSFLSTAFSFSFSPPRAHNLRLLYSSSAVVSCKLPPASDDPKGNENRVAKLAI 60

Query: 61  VTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRVAPPL 120
           VTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRVAPPL
Sbjct: 61  VTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRVAPPL 120

Query: 121 VGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAFVRKILGR 180
           VGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAFVRKILGR
Sbjct: 121 VGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAFVRKILGR 180

Query: 181 READDDDY 188
           READDDDY
Sbjct: 181 READDDDY 188

[Close]

BLAST of IVF0011311.2 vs. NCBI nr
Match: XP_004148325.2 (uncharacterized protein LOC101221328 [Cucumis sativus])

HSP 1 Score: 324 bits (831), Expect = 6.02e-111
Identity = 170/191 (89.01%), Postives = 179/191 (93.72%), Query Frame = 0


Query: 1   MSLPSSQLSFLSTAFSFS-FSPP-RAHNLRLLYSSSAVVSCKLPPASDDPKGNENRVAKL 60
           MSLPSSQL+FLSTAFSFS FSPP R HNLRLL+SS+ ++SCKLPP S DPKGNENRVA L
Sbjct: 1   MSLPSSQLTFLSTAFSFSSFSPPPRTHNLRLLHSSNPLISCKLPPPSHDPKGNENRVANL 60

Query: 61  AIVTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRVAP 120
           AIVTLMAG+LTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRVAP
Sbjct: 61  AIVTLMAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRVAP 120

Query: 121 PLVGGYGFGYGVPYYGG-WGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAFVRKI 180
           PL GGYG+GYGVPYYGG WGWSPFSFFAPSP VAVGIGGGLDVLFFFILLG+VAAFVR+I
Sbjct: 121 PL-GGYGYGYGVPYYGGGWGWSPFSFFAPSPAVAVGIGGGLDVLFFFILLGTVAAFVRRI 180

Query: 181 LGRREADDDDY 188
            GRRE DDDDY
Sbjct: 181 FGRREEDDDDY 190

[Close]

BLAST of IVF0011311.2 vs. NCBI nr
Match: XP_038889538.1 (uncharacterized protein LOC120079434 isoform X2 [Benincasa hispida])

HSP 1 Score: 311 bits (796), Expect = 1.21e-105
Identity = 164/191 (85.86%), Postives = 174/191 (91.10%), Query Frame = 0


Query: 1   MSLPSSQLSFLSTAFSFSFS---PPRAHNLRLLYSSSAVVSCKLPPASDDPKGNENRVAK 60
           MSL SSQLSFLSTAFSFSFS   P R +NL  L+SS+A VSCKLPPA+DDPKG+ENR+AK
Sbjct: 1   MSLASSQLSFLSTAFSFSFSVRTPRRTNNL--LHSSNAGVSCKLPPAADDPKGSENRLAK 60

Query: 61  LAIVTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRVA 120
           LAIVTL AG+LTLGSVHDASAAKTGGRVGGQAFRSAAPR SSPRINNNSRTNIYINPRVA
Sbjct: 61  LAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRVA 120

Query: 121 PPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAFVRKI 180
           PPLVGGYGFGYGVPYYGGWGWSPFSFFAPSP VAVGIGGG D+LF FILLG+VAAFVR+ 
Sbjct: 121 PPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPAVAVGIGGGFDLLFLFILLGTVAAFVRRF 180

Query: 181 LGRREADDDDY 188
            GRRE DDDDY
Sbjct: 181 FGRRE-DDDDY 188

[Close]

BLAST of IVF0011311.2 vs. NCBI nr
Match: XP_038889537.1 (uncharacterized protein LOC120079434 isoform X1 [Benincasa hispida])

HSP 1 Score: 303 bits (777), Expect = 1.13e-102
Identity = 163/196 (83.16%), Postives = 174/196 (88.78%), Query Frame = 0


Query: 1   MSLPSSQLSFLSTAFSFSFS---PPRAHNLRLLYSSSAVVSCKLPPASDDP-----KGNE 60
           MSL SSQLSFLSTAFSFSFS   P R +NL  L+SS+A VSCKLPPA+DDP     +G+E
Sbjct: 1   MSLASSQLSFLSTAFSFSFSVRTPRRTNNL--LHSSNAGVSCKLPPAADDPNGLLNRGSE 60

Query: 61  NRVAKLAIVTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYI 120
           NR+AKLAIVTL AG+LTLGSVHDASAAKTGGRVGGQAFRSAAPR SSPRINNNSRTNIYI
Sbjct: 61  NRLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYI 120

Query: 121 NPRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAA 180
           NPRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSP VAVGIGGG D+LF FILLG+VAA
Sbjct: 121 NPRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPAVAVGIGGGFDLLFLFILLGTVAA 180

Query: 181 FVRKILGRREADDDDY 188
           FVR+  GRRE DDDDY
Sbjct: 181 FVRRFFGRRE-DDDDY 193

[Close]

BLAST of IVF0011311.2 vs. NCBI nr
Match: XP_022969609.1 (uncharacterized protein LOC111468585 [Cucurbita maxima])

HSP 1 Score: 275 bits (703), Expect = 1.97e-91
Identity = 146/193 (75.65%), Postives = 162/193 (83.94%), Query Frame = 0


Query: 1   MSLPSSQLSFLSTAFSFSFSPPRAHNLRLLYSSSAVVSCKLPPASDDP----KGNENRVA 60
           MSL SSQLSFLST  SFS +P    +  +L+S   +++ KLPP +D+P    +GNENR+A
Sbjct: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADNPNGLERGNENRLA 60

Query: 61  KLAIVTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRV 120
           KLAIVTL AG+LTLGSVHDASAAKTGGRVGGQAFRSAAPR SSPRINNNSRTNIYINPRV
Sbjct: 61  KLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV 120

Query: 121 APPLVGGYGFGYGVPYYGG-WGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAFVR 180
           APPLVGGYG  YGVPYYGG WGWSPFSFFAP+P+VAVGIGGG DVL  FI LG+VAAFVR
Sbjct: 121 APPLVGGYG--YGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVR 180

Query: 181 KILGRREADDDDY 188
           + LG RE DDDDY
Sbjct: 181 RFLGGREEDDDDY 191

[Close]

BLAST of IVF0011311.2 vs. TAIR 10
Match: AT5G57345.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 191.0 bits (484), Expect = 8.4e-49
Identity = 107/192 (55.73%), Postives = 132/192 (68.75%), Query Frame = 0


Query: 2   SLPSSQLSFLSTAFSFSFSPPRAHNLRLLYSSSAVVSCKL---PPASDDPKGNENRVAKL 61
           ++ SS+ SFLS  FSF  S     N+ L   +S  + CK       +D  + NEN++AKL
Sbjct: 5   AIASSRQSFLSNNFSFQHSFKPKSNVNLTRPNS--ICCKSSHHDDETDSSRKNENQLAKL 64

Query: 62  AIVTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRVAP 121
           AI TL  G+L LGSV DA AAK+GGR+GGQAFRS+APRP  PRINN SRTNIY+NP+VAP
Sbjct: 65  AIATLAVGVLALGSVGDAFAAKSGGRIGGQAFRSSAPRP-PPRINNRSRTNIYVNPQVAP 124

Query: 122 PLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAFVRKIL 181
           PL+GGYG+G     YGG+GWSPFSFFAP P VAVG+GGG D+L  F+  G+ +A  R   
Sbjct: 125 PLIGGYGYG-----YGGYGWSPFSFFAPGPAVAVGVGGGFDLLLLFMFFGAASAVARNFF 184

Query: 182 GRR--EADDDDY 189
             R  E D+DDY
Sbjct: 185 RSRNDEDDEDDY 188

[Close]

BLAST of IVF0011311.2 vs. TAIR 10
Match: AT1G54520.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1517 (InterPro:IPR010903); Has 276 Blast hits to 275 proteins in 83 species: Archae - 0; Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 1.7e-04
Identity = 60/203 (29.56%), Postives = 82/203 (40.39%), Query Frame = 0


Query: 3   LPSSQLSFLSTAFSFSFSPPRAHNLRLLYSSSAVVSCKLPPASDDPKGNEN--------- 62
           LP +Q     T   +S    R++++RL  S    V  K   +S DP    N         
Sbjct: 19  LPYTQRPHHRTVLLYSKPQRRSNSIRLQIS----VKYKQSTSSSDPDLRSNFNPFEQIAI 78

Query: 63  -------RVAKLAIVTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNS 122
                   + K AI  ++ G+L     + A AA +GGR+GG +F S +      R +++S
Sbjct: 79  QVKKALDSLKKPAIAAVLLGLLLFYDPNSALAA-SGGRIGGNSFSSRS------RSSSSS 138

Query: 123 RTNIYINPRVAPPLVGGYGFGYG---VPYYGGWGWSPFSFFAPSPTVAVGIGGGLDVLFF 182
            +  Y  PR + P      F Y     PYYG    SPF      P V  G GG     F 
Sbjct: 139 SSQSYSVPRTSNP-----SFSYSARTAPYYGP---SPFGGGFVGPAVGFGFGGFSS--FS 198

Query: 183 FILLGSVA-AFVRKILGRREADD 186
            IL+G  A   V   L  R  DD
Sbjct: 199 LILVGFAAFVLVSGFLSDRSQDD 200

The following BLAST results are available for this feature:

BLAST of IVF0011311.2 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011311.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U097	2.4e-99	100.00	La-related protein 6 isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3BRQ8	2.4e-99	100.00	uncharacterized protein LOC103492785 OS=Cucumis melo OX=3656 GN=LOC103492785 PE=...	[more]
A0A0A0LGT3	1.1e-85	89.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060360 PE=4 SV=1	[more]
A0A6J1I348	1.0e-70	75.65	uncharacterized protein LOC111468585 OS=Cucurbita maxima OX=3661 GN=LOC111468585...	[more]
A0A6J1FDE3	5.1e-70	75.13	uncharacterized protein LOC111444353 OS=Cucurbita moschata OX=3662 GN=LOC1114443...	[more]

BLAST of IVF0011311.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451528.1	5.75e-129	100.00	PREDICTED: uncharacterized protein LOC103492785 [Cucumis melo] >KAA0048618.1 La-...	[more]
XP_004148325.2	6.02e-111	89.01	uncharacterized protein LOC101221328 [Cucumis sativus]	[more]
XP_038889538.1	1.21e-105	85.86	uncharacterized protein LOC120079434 isoform X2 [Benincasa hispida]	[more]
XP_038889537.1	1.13e-102	83.16	uncharacterized protein LOC120079434 isoform X1 [Benincasa hispida]	[more]
XP_022969609.1	1.97e-91	75.65	uncharacterized protein LOC111468585 [Cucurbita maxima]	[more]

BLAST of IVF0011311.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57345.1	8.4e-49	55.73	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT1G54520.1	1.7e-04	29.56	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37768:SF2	OS06G0694800 PROTEIN	coord: 1..188
None	No IPR available	PANTHER	PTHR37768	OS06G0694800 PROTEIN	coord: 1..188

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0011311	IVF0011311	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0011311.2-exon	IVF0011311.2-exon-chr05:20434742..20435224	exon
IVF0011311.2-exon	IVF0011311.2-exon-chr05:20436388..20436561	exon
IVF0011311.2-exon	IVF0011311.2-exon-chr05:20436657..20436990	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0011311.2-three_prime_utr	IVF0011311.2-three_prime_utr-chr05:20434742..20434977	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0011311.2-cds	IVF0011311.2-cds-chr05:20434978..20435224	CDS
IVF0011311.2-cds	IVF0011311.2-cds-chr05:20436388..20436561	CDS
IVF0011311.2-cds	IVF0011311.2-cds-chr05:20436657..20436802	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0011311.2-five_prime_utr	IVF0011311.2-five_prime_utr-chr05:20436803..20436990	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0011311.2	IVF0011311.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071470	cellular response to osmotic stress
biological_process	GO:0034599	cellular response to oxidative stress
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane