IVF0010396.1 (mRNA) Melon (IVF77) v1

Overview
NameIVF0010396.1
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr07: 6848537 .. 6848815 (+)
Sequence length243
RNA-Seq ExpressionIVF0010396.1
SyntenyIVF0010396.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATTGCAAATGATTTTAACTATTCTAGATGTTATTAATGATTTATCGAAAATGGCATTGAGAGTAAGAGGAGCTATCGACGTTTTCGTGCTGCATCAGGAGTTTCCATATAAAAAAGATGTTTCAGTACTGTGAAACACAGAACCGAAACGAAAGAGAAAGAGGAAGAGGAGAGTTCAGCTGGCGAAACGAAGAGAGGAGAAAATATCAATCGTCGCCGCCATGAGCCTGCCGTCATGCCTCTCCCGTCGTCTGCCATTGCACACCCTTATTTAA

mRNA sequence

ATGGTATTGCAAATGATTTTAACTATTCTAGATGTTATTAATGATTTATCGAAAATGGCATTGAGAGTAAGAGGAGCTATCGACGTTTTCGTGCTGCATCAGGAGTTTCCATATAAAAAAGATAGAAAGAGGAAGAGGAGAGTTCAGCTGGCGAAACGAAGAGAGGAGAAAATATCAATCGTCGCCGCCATGAGCCTGCCGTCATGCCTCTCCCGTCGTCTGCCATTGCACACCCTTATTTAA

Coding sequence (CDS)

ATGGTATTGCAAATGATTTTAACTATTCTAGATGTTATTAATGATTTATCGAAAATGGCATTGAGAGTAAGAGGAGCTATCGACGTTTTCGTGCTGCATCAGGAGTTTCCATATAAAAAAGATAGAAAGAGGAAGAGGAGAGTTCAGCTGGCGAAACGAAGAGAGGAGAAAATATCAATCGTCGCCGCCATGAGCCTGCCGTCATGCCTCTCCCGTCGTCTGCCATTGCACACCCTTATTTAA

Protein sequence

MVLQMILTILDVINDLSKMALRVRGAIDVFVLHQEFPYKKDRKRKRRVQLAKRREEKISIVAAMSLPSCLSRRLPLHTLI
Homology
[Close]
BLAST of IVF0010396.1 vs. ExPASy TrEMBL
Match: A0A5A7UYR0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00710 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-04
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 0 

Query: 11 DVINDLSKMALRVRGAIDVFVLHQEFPYKKDRKRKRRVQLAKRREEKISIVAAMSLPSCL 70
          +V+ND S+M   VR A+D+FVL  EFP          V+  KRRE+KIS +  +SLPSCL
Sbjct: 10 NVVNDSSRMTSEVREALDIFVLRWEFP----------VRPMKRREKKISNIVVVSLPSCL 64

Query: 71 SRRLP 76
          S  LP
Sbjct: 70 SCHLP 64

[Close]
BLAST of IVF0010396.1 vs. NCBI nr
Match: KAA0060194.1 (hypothetical protein E6C27_scaffold386G00060 [Cucumis melo var. makuwa] >TYJ95566.1 hypothetical protein E5676_scaffold767G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 2.80e-07
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 0 

Query: 11 DVINDLSKMALRVRGAIDVFVLHQEFPYKKDRKRKRRVQLAKRREEKISIVAAMSLPSCL 70
          +V+ND S+M   VR A+D+FVL  EFP          V+  KRRE+KIS +  +SLPSCL
Sbjct: 10 NVVNDSSRMTSEVREALDIFVLRWEFP----------VRPMKRREKKISNIVVVSLPSCL 64

Query: 71 SRRLP 75
          S  LP
Sbjct: 70 SCHLP 64

The following BLAST results are available for this feature:
BLAST of IVF0010396.1 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0010396.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UYR01.2e-0449.23Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of IVF0010396.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0060194.12.80e-0749.23hypothetical protein E6C27_scaffold386G00060 [Cucumis melo var. makuwa] >TYJ9556... [more]
BLAST of IVF0010396.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0010396IVF0010396gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0010396.1-exonIVF0010396.1-exon-chr07:6848537..6848659exon
IVF0010396.1-exonIVF0010396.1-exon-chr07:6848696..6848815exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0010396.1-cdsIVF0010396.1-cds-chr07:6848537..6848659CDS
IVF0010396.1-cdsIVF0010396.1-cds-chr07:6848696..6848815CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0010396.1IVF0010396.1-proteinpolypeptide