IVF0008887.2 (mRNA) Melon (IVF77) v1

Overview
NameIVF0008887.2
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSerine/threonine-protein phosphatase 7 long form-like protein
Locationchr06: 21841694 .. 21841990 (-)
Sequence length297
RNA-Seq ExpressionIVF0008887.2
SyntenyIVF0008887.2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTATGAAGACTTTATTGAGGACTATTATAAAATATCAACTTACGCCGCATGCTATGCGCCTCAGTTTCAACCTGTACCGCATGAAGATTATTGGATAACACCTACAAGTATGCCTGTCTTACTGCCAGATCCATCGTTGTTGAGAAAATCAGGTAGACCAAAGACTTCACGTTATCACAACGAGATGGATTGGACAGAACAAAGTGCTCAACAACGATGCTCATTCTGTAGCCAACTTGGTCATAACCGACGGAGCTGTACTTTGTTAAGGAGACAGGCACCTGATAGTTAG

mRNA sequence

ATGAACTATGAAGACTTTATTGAGGACTATTATAAAATATCAACTTACGCCGCATGCTATGCGCCTCAGTTTCAACCTGTACCGCATGAAGATTATTGGATAACACCTACAAGTATGCCTGTCTTACTGCCAGATCCATCGTTGTTGAGAAAATCAGGTAGACCAAAGACTTCACGTTATCACAACGAGATGGATTGGACAGAACAAAGTGCTCAACAACGATGCTCATTCTGTAGCCAACTTGGTCATAACCGACGGAGCTGTACTTTGTTAAGGAGACAGGCACCTGATAGTTAG

Coding sequence (CDS)

ATGAACTATGAAGACTTTATTGAGGACTATTATAAAATATCAACTTACGCCGCATGCTATGCGCCTCAGTTTCAACCTGTACCGCATGAAGATTATTGGATAACACCTACAAGTATGCCTGTCTTACTGCCAGATCCATCGTTGTTGAGAAAATCAGGTAGACCAAAGACTTCACGTTATCACAACGAGATGGATTGGACAGAACAAAGTGCTCAACAACGATGCTCATTCTGTAGCCAACTTGGTCATAACCGACGGAGCTGTACTTTGTTAAGGAGACAGGCACCTGATAGTTAG

Protein sequence

MNYEDFIEDYYKISTYAACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRYHNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS
Homology
[Close]
BLAST of IVF0008887.2 vs. ExPASy TrEMBL
Match: A0A5D3BJ66 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4012G00010 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 9.6e-52
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MNYEDFIEDYYKISTYAACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60
          MNYEDF+EDYYKISTYAACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY
Sbjct: 1  MNYEDFVEDYYKISTYAACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60

Query: 61 HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 99
          HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS
Sbjct: 61 HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 98

[Close]
BLAST of IVF0008887.2 vs. ExPASy TrEMBL
Match: A0A5A7T1X8 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00510 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 8.1e-51
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 1   MNYEDFIEDYYKISTYAACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60
           MNYEDF+EDYYKISTYAACYA QFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY
Sbjct: 543 MNYEDFVEDYYKISTYAACYASQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 602

Query: 61  HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 99
           HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS
Sbjct: 603 HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 640

[Close]
BLAST of IVF0008887.2 vs. ExPASy TrEMBL
Match: A0A5D3D607 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00150 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.0e-50
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 1  MNYEDFIEDYYKISTYAACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60
          MNYEDF+EDYYKISTY ACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY
Sbjct: 1  MNYEDFVEDYYKISTYVACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60

Query: 61 HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 99
          HNEMDWTEQSAQQRCSF SQLGHNRRSCTLLRRQAPDS
Sbjct: 61 HNEMDWTEQSAQQRCSFSSQLGHNRRSCTLLRRQAPDS 98

[Close]
BLAST of IVF0008887.2 vs. ExPASy TrEMBL
Match: A0A5D3BR89 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00280 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.3e-47
Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 0 

Query: 1   MNYEDFIEDYYKISTYAACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60
           MNYEDF+EDYYKI TY ACYAPQFQPVPHEDYWITPTSMPVLL DPSLLRKSGR K+SRY
Sbjct: 330 MNYEDFVEDYYKILTYVACYAPQFQPVPHEDYWITPTSMPVLLSDPSLLRKSGRSKSSRY 389

Query: 61  HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 99
           HNEMDWTEQSAQQRCSFCSQLGHNR  CTLLRRQAPDS
Sbjct: 390 HNEMDWTEQSAQQRCSFCSQLGHNRWRCTLLRRQAPDS 427

[Close]
BLAST of IVF0008887.2 vs. ExPASy TrEMBL
Match: A0A5A7TD93 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00780 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.3e-47
Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 0 

Query: 1   MNYEDFIEDYYKISTYAACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60
           MNYEDF+EDYYKI TY ACYAPQFQPVPHEDYWITPTSMPVLL DPSLLRKSGR K+SRY
Sbjct: 418 MNYEDFVEDYYKILTYVACYAPQFQPVPHEDYWITPTSMPVLLSDPSLLRKSGRSKSSRY 477

Query: 61  HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 99
           HNEMDWTEQSAQQRCSFCSQLGHNR  CTLLRRQAPDS
Sbjct: 478 HNEMDWTEQSAQQRCSFCSQLGHNRWRCTLLRRQAPDS 515

[Close]
BLAST of IVF0008887.2 vs. NCBI nr
Match: TYJ98405.1 (uncharacterized protein E5676_scaffold4012G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (531), Expect = 3.84e-68
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MNYEDFIEDYYKISTYAACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60
          MNYEDF+EDYYKISTYAACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY
Sbjct: 1  MNYEDFVEDYYKISTYAACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60

Query: 61 HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 98
          HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS
Sbjct: 61 HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 98

[Close]
BLAST of IVF0008887.2 vs. NCBI nr
Match: TYK18933.1 (uncharacterized protein E5676_scaffold418G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 203 bits (517), Expect = 5.25e-66
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 1  MNYEDFIEDYYKISTYAACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60
          MNYEDF+EDYYKISTY ACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY
Sbjct: 1  MNYEDFVEDYYKISTYVACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60

Query: 61 HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 98
          HNEMDWTEQSAQQRCSF SQLGHNRRSCTLLRRQAPDS
Sbjct: 61 HNEMDWTEQSAQQRCSFSSQLGHNRRSCTLLRRQAPDS 98

[Close]
BLAST of IVF0008887.2 vs. NCBI nr
Match: KAA0036768.1 (uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 206 bits (523), Expect = 9.14e-61
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 1   MNYEDFIEDYYKISTYAACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60
           MNYEDF+EDYYKISTYAACYA QFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY
Sbjct: 543 MNYEDFVEDYYKISTYAACYASQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 602

Query: 61  HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 98
           HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS
Sbjct: 603 HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 640

[Close]
BLAST of IVF0008887.2 vs. NCBI nr
Match: TYK01705.1 (uncharacterized protein E5676_scaffold775G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 192 bits (488), Expect = 2.03e-57
Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 0 

Query: 1   MNYEDFIEDYYKISTYAACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60
           MNYEDF+EDYYKI TY ACYAPQFQPVPHEDYWITPTSMPVLL DPSLLRKSGR K+SRY
Sbjct: 330 MNYEDFVEDYYKILTYVACYAPQFQPVPHEDYWITPTSMPVLLSDPSLLRKSGRSKSSRY 389

Query: 61  HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 98
           HNEMDWTEQSAQQRCSFCSQLGHNR  CTLLRRQAPDS
Sbjct: 390 HNEMDWTEQSAQQRCSFCSQLGHNRWRCTLLRRQAPDS 427

[Close]
BLAST of IVF0008887.2 vs. NCBI nr
Match: XP_008457265.1 (PREDICTED: uncharacterized protein LOC103496991 [Cucumis melo])

HSP 1 Score: 192 bits (488), Expect = 3.59e-57
Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 0 

Query: 1   MNYEDFIEDYYKISTYAACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60
           MNYEDF+EDYYKI TY ACYAPQFQPVPHEDYWITPTSMPVLL DPSLLRKSGR K+SRY
Sbjct: 355 MNYEDFVEDYYKILTYVACYAPQFQPVPHEDYWITPTSMPVLLSDPSLLRKSGRSKSSRY 414

Query: 61  HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 98
           HNEMDWTEQSAQQRCSFCSQLGHNR  CTLLRRQAPDS
Sbjct: 415 HNEMDWTEQSAQQRCSFCSQLGHNRWRCTLLRRQAPDS 452

The following BLAST results are available for this feature:
BLAST of IVF0008887.2 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0008887.2 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BJ669.6e-5298.98Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T1X88.1e-5197.96SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3D6074.0e-5096.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BR899.3e-4791.84SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7TD939.3e-4791.84SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
BLAST of IVF0008887.2 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ98405.13.84e-6898.98uncharacterized protein E5676_scaffold4012G00010 [Cucumis melo var. makuwa][more]
TYK18933.15.25e-6696.94uncharacterized protein E5676_scaffold418G00150 [Cucumis melo var. makuwa][more]
KAA0036768.19.14e-6197.96uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa][more]
TYK01705.12.03e-5791.84uncharacterized protein E5676_scaffold775G00280 [Cucumis melo var. makuwa][more]
XP_008457265.13.59e-5791.84PREDICTED: uncharacterized protein LOC103496991 [Cucumis melo][more]
BLAST of IVF0008887.2 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0008887IVF0008887gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0008887.2-exonIVF0008887.2-exon-chr06:21841694..21841990exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0008887.2-cdsIVF0008887.2-cds-chr06:21841694..21841990CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0008887.2IVF0008887.2-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding