IVF0008589.1 (mRNA) Melon (IVF77) v1

Overview
NameIVF0008589.1
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionconserved peptide upstream open reading frame 14
Locationchr06: 703736 .. 703894 (+)
Sequence length159
RNA-Seq ExpressionIVF0008589.1
SyntenyIVF0008589.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAGTGGAAAGGTTCTGGAAAACTAGGAAGACTGGTGCCGAGAGGTGGTTCTATGACTTCTTACAAGTATGCTCTTCTGTTGTCACCTGTTGTCTCTGTTTGGGATTGCATTGTCAGGAAAATGAGGTATTCCTACAGACCTGAGTGGGTGTAG

mRNA sequence

ATGGATAAGTGGAAAGGTTCTGGAAAACTAGGAAGACTGGTGCCGAGAGGTGGTTCTATGACTTCTTACAAGTATGCTCTTCTGTTGTCACCTGTTGTCTCTGTTTGGGATTGCATTGTCAGGAAAATGAGGTATTCCTACAGACCTGAGTGGGTGTAG

Coding sequence (CDS)

ATGGATAAGTGGAAAGGTTCTGGAAAACTAGGAAGACTGGTGCCGAGAGGTGGTTCTATGACTTCTTACAAGTATGCTCTTCTGTTGTCACCTGTTGTCTCTGTTTGGGATTGCATTGTCAGGAAAATGAGGTATTCCTACAGACCTGAGTGGGTGTAG

Protein sequence

MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV
Homology
BLAST of IVF0008589.1 vs. ExPASy TrEMBL
Match: A0A1S3AY20 (uncharacterized protein LOC103484116 OS=Cucumis melo OX=3656 GN=LOC103484116 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-22
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0

Query: 1  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
          MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV
Sbjct: 4  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 55

BLAST of IVF0008589.1 vs. ExPASy TrEMBL
Match: A0A5A7SWR1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001680 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-22
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0

Query: 1   MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
           MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV
Sbjct: 50  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 101

BLAST of IVF0008589.1 vs. ExPASy TrEMBL
Match: A0A6J5WRR2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS17860 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 41/52 (78.85%), Postives = 49/52 (94.23%), Query Frame = 0

Query: 1  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
          M K KG GKLGR++PRGGS+++Y+++LLLSPVVSVWDCIVRKMRYSYRPEWV
Sbjct: 44 MGKCKGCGKLGRMMPRGGSVSAYQFSLLLSPVVSVWDCIVRKMRYSYRPEWV 95

BLAST of IVF0008589.1 vs. ExPASy TrEMBL
Match: A0A498KSB3 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_042840 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 41/52 (78.85%), Postives = 49/52 (94.23%), Query Frame = 0

Query: 1  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
          M K KG GKLGR++PRGGS+++Y+++LLLSPVVSVWDCIVRKMRYSYRPEWV
Sbjct: 4  MGKCKGCGKLGRMMPRGGSVSAYQFSLLLSPVVSVWDCIVRKMRYSYRPEWV 55

BLAST of IVF0008589.1 vs. ExPASy TrEMBL
Match: A0A251QNM1 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G300500 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 41/52 (78.85%), Postives = 49/52 (94.23%), Query Frame = 0

Query: 1  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
          M K KG GKLGR++PRGGS+++Y+++LLLSPVVSVWDCIVRKMRYSYRPEWV
Sbjct: 1  MGKCKGCGKLGRMMPRGGSVSAYQFSLLLSPVVSVWDCIVRKMRYSYRPEWV 52

BLAST of IVF0008589.1 vs. NCBI nr
Match: XP_008439287.1 (PREDICTED: uncharacterized protein LOC103484116 [Cucumis melo] >XP_016899083.1 PREDICTED: uncharacterized protein LOC103484116 [Cucumis melo])

HSP 1 Score: 114 bits (285), Expect = 5.65e-32
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0

Query: 1  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 52
          MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV
Sbjct: 4  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 55

BLAST of IVF0008589.1 vs. NCBI nr
Match: KAA0033697.1 (uncharacterized protein E6C27_scaffold239G001680 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (285), Expect = 2.03e-31
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0

Query: 1   MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 52
           MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV
Sbjct: 50  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 101

BLAST of IVF0008589.1 vs. NCBI nr
Match: KAG7013257.1 (hypothetical protein SDJN02_26015, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108 bits (270), Expect = 2.95e-29
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 52
          M KWKG GKLGRLVPRGGSMTSYKY+LLLSPVVSVWDCIVRKMRYSYRPEWV
Sbjct: 40 MGKWKGCGKLGRLVPRGGSMTSYKYSLLLSPVVSVWDCIVRKMRYSYRPEWV 91

BLAST of IVF0008589.1 vs. NCBI nr
Match: KAB2598673.1 (hypothetical protein D8674_001593 [Pyrus ussuriensis x Pyrus communis] >ONI25398.1 hypothetical protein PRUPE_2G300500 [Prunus persica])

HSP 1 Score: 94.4 bits (233), Expect = 4.59e-24
Identity = 41/52 (78.85%), Postives = 49/52 (94.23%), Query Frame = 0

Query: 1  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 52
          M K KG GKLGR++PRGGS+++Y+++LLLSPVVSVWDCIVRKMRYSYRPEWV
Sbjct: 1  MGKCKGCGKLGRMMPRGGSVSAYQFSLLLSPVVSVWDCIVRKMRYSYRPEWV 52

BLAST of IVF0008589.1 vs. NCBI nr
Match: XP_016650179.1 (PREDICTED: uncharacterized protein LOC103333726 isoform X2 [Prunus mume] >XP_016650180.1 PREDICTED: uncharacterized protein LOC103333726 isoform X2 [Prunus mume])

HSP 1 Score: 94.4 bits (233), Expect = 5.73e-24
Identity = 41/52 (78.85%), Postives = 49/52 (94.23%), Query Frame = 0

Query: 1  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 52
          M K KG GKLGR++PRGGS+++Y+++LLLSPVVSVWDCIVRKMRYSYRPEWV
Sbjct: 10 MGKCKGCGKLGRMMPRGGSVSAYQFSLLLSPVVSVWDCIVRKMRYSYRPEWV 61

BLAST of IVF0008589.1 vs. TAIR 10
Match: AT5G52552.1 (conserved peptide upstream open reading frame 14 )

HSP 1 Score: 73.6 bits (179), Expect = 5.4e-14
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 0

Query: 1  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
          M + KG  KLGR++ +  S  SY  +LLLSPVVSVWDCIVRKMRY+Y PEWV
Sbjct: 1  MGEVKGCWKLGRMLSKDNSANSYNVSLLLSPVVSVWDCIVRKMRYTYIPEWV 52

BLAST of IVF0008589.1 vs. TAIR 10
Match: AT4G25672.1 (conserved peptide upstream open reading frame 12 )

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-12
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 0

Query: 1  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
          M + KG G +GR++ +  S  SY  +L LSPVVS WDCIVR MRYSY PEWV
Sbjct: 1  MGESKGCGNVGRMISKNKSANSYNLSLQLSPVVSFWDCIVRTMRYSYIPEWV 52

BLAST of IVF0008589.1 vs. TAIR 10
Match: AT4G25692.1 (conserved peptide upstream open reading frame 13 )

HSP 1 Score: 56.2 bits (134), Expect = 8.9e-09
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 0

Query: 1  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
          M +  G GK G ++P   S  SY  +L LS V SVWDC VR MRYSY PEW+
Sbjct: 4  MGESTGCGKGGLMIPNHKSANSYNLSLELSLVDSVWDCNVRTMRYSYIPEWL 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3AY201.9e-22100.00uncharacterized protein LOC103484116 OS=Cucumis melo OX=3656 GN=LOC103484116 PE=... [more]
A0A5A7SWR11.9e-22100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A6J5WRR22.0e-1678.85Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS17860 PE=4 S... [more]
A0A498KSB32.0e-1678.85Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_042840 PE=4 SV=1[more]
A0A251QNM12.0e-1678.85Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G300500 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_008439287.15.65e-32100.00PREDICTED: uncharacterized protein LOC103484116 [Cucumis melo] >XP_016899083.1 P... [more]
KAA0033697.12.03e-31100.00uncharacterized protein E6C27_scaffold239G001680 [Cucumis melo var. makuwa][more]
KAG7013257.12.95e-2994.23hypothetical protein SDJN02_26015, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAB2598673.14.59e-2478.85hypothetical protein D8674_001593 [Pyrus ussuriensis x Pyrus communis] >ONI25398... [more]
XP_016650179.15.73e-2478.85PREDICTED: uncharacterized protein LOC103333726 isoform X2 [Prunus mume] >XP_016... [more]
Match NameE-valueIdentityDescription
AT5G52552.15.4e-1465.38conserved peptide upstream open reading frame 14 [more]
AT4G25672.11.7e-1259.62conserved peptide upstream open reading frame 12 [more]
AT4G25692.18.9e-0953.85conserved peptide upstream open reading frame 13 [more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0008589IVF0008589gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0008589.1-exonIVF0008589.1-exon-chr06:703736..703894exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0008589.1-cdsIVF0008589.1-cds-chr06:703736..703894CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0008589.1IVF0008589.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane