IVF0006547.2 (mRNA) Melon (IVF77) v1

Overview
NameIVF0006547.2
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionProtein of unknown function (DUF 3339)
Locationchr03: 1563951 .. 1564159 (+)
Sequence length180
RNA-Seq ExpressionIVF0006547.2
SyntenyIVF0006547.2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGCAGACTGGGGTCCAGTTGTGGTGGCGGTGGCTTTGTTCATTCTCCTCTCGCCGGGGCTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTCGGGAATATGAACACCAGTGGGATTGCCATTTGGTACATGCCATCATATTCTTCTGCATACTTACCATATTGATCATTGCAATTGGTATTCACATACACGTTTAG

mRNA sequence

ATGAGTGCAGACTGGGGTCCAGTTGTGGTGGCGGTGGCTTTGTTCATTCTCCTCTCGCCGGGGCTGCTTTTTCAGTTGCCGGCGAGAATCAGGTGGGATTGCCATTTGGTACATGCCATCATATTCTTCTGCATACTTACCATATTGATCATTGCAATTGGTATTCACATACACGTTTAG

Coding sequence (CDS)

ATGAGTGCAGACTGGGGTCCAGTTGTGGTGGCGGTGGCTTTGTTCATTCTCCTCTCGCCGGGGCTGCTTTTTCAGTTGCCGGCGAGAATCAGGTGGGATTGCCATTTGGTACATGCCATCATATTCTTCTGCATACTTACCATATTGATCATTGCAATTGGTATTCACATACACGTTTAG

Protein sequence

MSADWGPVVVAVALFILLSPGLLFQLPARIRWDCHLVHAIIFFCILTILIIAIGIHIHV
Homology
BLAST of IVF0006547.2 vs. ExPASy TrEMBL
Match: A0A0A0LQ54 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406090 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-15
Identity = 55/69 (79.71%), Postives = 55/69 (79.71%), Query Frame = 0

Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIR----------WDCHLVHAIIFFCILTILI 60
          MSADWGPVVVAVALFILLSPGLLFQLPARIR              LVHAIIFFCILTILI
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILI 60

BLAST of IVF0006547.2 vs. ExPASy TrEMBL
Match: A0A1S3B3T8 (uncharacterized protein LOC103485471 OS=Cucumis melo OX=3656 GN=LOC103485471 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-15
Identity = 55/69 (79.71%), Postives = 55/69 (79.71%), Query Frame = 0

Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIR----------WDCHLVHAIIFFCILTILI 60
          MSADWGPVVVAVALFILLSPGLLFQLPARIR              LVHAIIFFCILTILI
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILI 60

BLAST of IVF0006547.2 vs. ExPASy TrEMBL
Match: A0A6J1JT68 (uncharacterized protein LOC111487624 OS=Cucurbita maxima OX=3661 GN=LOC111487624 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.3e-15
Identity = 53/69 (76.81%), Postives = 55/69 (79.71%), Query Frame = 0

Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIR----------WDCHLVHAIIFFCILTILI 60
          MSADWGPVVVAVALFI+LSPGLLFQLPARIR              LVHAIIFFCILTIL+
Sbjct: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

BLAST of IVF0006547.2 vs. ExPASy TrEMBL
Match: A0A6J1JYL4 (uncharacterized protein LOC111489052 OS=Cucurbita maxima OX=3661 GN=LOC111489052 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.3e-15
Identity = 53/69 (76.81%), Postives = 55/69 (79.71%), Query Frame = 0

Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIR----------WDCHLVHAIIFFCILTILI 60
          M+ADWGPVVVAVALFILLSPGLLFQLPARIR              LVHAIIFFCILTIL+
Sbjct: 1  MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

BLAST of IVF0006547.2 vs. ExPASy TrEMBL
Match: A0A6J1BXY0 (uncharacterized protein LOC111006600 OS=Momordica charantia OX=3673 GN=LOC111006600 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.3e-15
Identity = 52/68 (76.47%), Postives = 54/68 (79.41%), Query Frame = 0

Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIR----------WDCHLVHAIIFFCILTILI 59
          MSADWGPVV+AVALFILLSPGLLFQLPARIR              LVHAIIFFCILTIL+
Sbjct: 1  MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

BLAST of IVF0006547.2 vs. NCBI nr
Match: XP_008441321.1 (PREDICTED: uncharacterized protein LOC103485471 [Cucumis melo] >XP_011649953.1 uncharacterized protein LOC105434681 [Cucumis sativus] >XP_038884724.1 uncharacterized protein LOC120075416 [Benincasa hispida])

HSP 1 Score: 90.5 bits (223), Expect = 3.19e-22
Identity = 55/69 (79.71%), Postives = 55/69 (79.71%), Query Frame = 0

Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIR----------WDCHLVHAIIFFCILTILI 59
          MSADWGPVVVAVALFILLSPGLLFQLPARIR              LVHAIIFFCILTILI
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILI 60

BLAST of IVF0006547.2 vs. NCBI nr
Match: XP_022134305.1 (uncharacterized protein LOC111006600 [Momordica charantia])

HSP 1 Score: 89.0 bits (219), Expect = 1.30e-21
Identity = 52/68 (76.47%), Postives = 54/68 (79.41%), Query Frame = 0

Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIR----------WDCHLVHAIIFFCILTILI 58
          MSADWGPVV+AVALFILLSPGLLFQLPARIR              LVHAIIFFCILTIL+
Sbjct: 1  MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

BLAST of IVF0006547.2 vs. NCBI nr
Match: XP_022939393.1 (uncharacterized protein LOC111445324 [Cucurbita moschata] >XP_022992844.1 uncharacterized protein LOC111489052 [Cucurbita maxima] >XP_023550674.1 uncharacterized protein LOC111808749 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.0 bits (219), Expect = 1.30e-21
Identity = 53/69 (76.81%), Postives = 55/69 (79.71%), Query Frame = 0

Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIR----------WDCHLVHAIIFFCILTILI 59
          M+ADWGPVVVAVALFILLSPGLLFQLPARIR              LVHAIIFFCILTIL+
Sbjct: 1  MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

BLAST of IVF0006547.2 vs. NCBI nr
Match: XP_022961461.1 (uncharacterized protein LOC111462035 [Cucurbita moschata] >XP_022990859.1 uncharacterized protein LOC111487624 [Cucurbita maxima] >XP_023522991.1 uncharacterized protein LOC111787076 [Cucurbita pepo subsp. pepo] >XP_023544168.1 uncharacterized protein LOC111803819 [Cucurbita pepo subsp. pepo] >XP_023544180.1 uncharacterized protein LOC111803828 [Cucurbita pepo subsp. pepo] >KAG7033374.1 hypothetical protein SDJN02_07430, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.0 bits (219), Expect = 1.34e-21
Identity = 53/69 (76.81%), Postives = 55/69 (79.71%), Query Frame = 0

Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIR----------WDCHLVHAIIFFCILTILI 59
          MSADWGPVVVAVALFI+LSPGLLFQLPARIR              LVHAIIFFCILTIL+
Sbjct: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

BLAST of IVF0006547.2 vs. NCBI nr
Match: XP_021653637.1 (uncharacterized protein LOC110644967 [Hevea brasiliensis])

HSP 1 Score: 86.3 bits (212), Expect = 1.56e-20
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 0

Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIR----WDCH------LVHAIIFFCILTILI 59
          MSADWGPVVVAV LFILLSPGLLFQ+PARIR       H      LVHA+I+FCI+TILI
Sbjct: 1  MSADWGPVVVAVILFILLSPGLLFQIPARIRVVEFGSMHTSGIAILVHAVIYFCIITILI 60

BLAST of IVF0006547.2 vs. TAIR 10
Match: AT5G40980.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 83.6 bits (205), Expect = 5.9e-17
Identity = 50/68 (73.53%), Postives = 52/68 (76.47%), Query Frame = 0

Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIR----------WDCHLVHAIIFFCILTILI 59
          MSADWGPV+VAVALFILLSPGLLFQLPAR R              LVHAII+FCILTILI
Sbjct: 1  MSADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILI 60

BLAST of IVF0006547.2 vs. TAIR 10
Match: AT3G27027.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-15
Identity = 46/68 (67.65%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIR----------WDCHLVHAIIFFCILTILI 59
          MS DWGPV+VAV+LFILLSPGLLFQLPAR R              LVHA I+FCILTIL+
Sbjct: 1  MSTDWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILV 60

BLAST of IVF0006547.2 vs. TAIR 10
Match: AT3G01940.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 73.2 bits (178), Expect = 8.0e-14
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 3  ADWGPVVVAVALFILLSPGLLFQLPARIR-WDCH---------LVHAIIFFCILTILIIA 60
          ADWGPV VAV LF++LSPGLLFQLPAR R  +C          LVHAI+FF I+TIL+IA
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

BLAST of IVF0006547.2 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-10
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 0

Query: 3  ADWGPVVVAVALFILLSPGLLFQLPARIR----------WDCHLVHAIIFFCILTILIIA 59
          ADWGPVVVAV LF+LL+PGLLFQ+PAR R              LVH IIFF ++TI  IA
Sbjct: 2  ADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTIA 61

BLAST of IVF0006547.2 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 60.5 bits (145), Expect = 5.4e-10
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 0

Query: 3  ADWGPVVVAVALFILLSPGLLFQLPA----------RIRWDCHLVHAIIFFCILTILIIA 59
          ADWGPV++AV LF++LSPGLLFQ+PA          +      LVHAIIFF ++TI  IA
Sbjct: 2  ADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTIA 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQ541.5e-1579.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406090 PE=4 SV=1[more]
A0A1S3B3T81.5e-1579.71uncharacterized protein LOC103485471 OS=Cucumis melo OX=3656 GN=LOC103485471 PE=... [more]
A0A6J1JT684.3e-1576.81uncharacterized protein LOC111487624 OS=Cucurbita maxima OX=3661 GN=LOC111487624... [more]
A0A6J1JYL44.3e-1576.81uncharacterized protein LOC111489052 OS=Cucurbita maxima OX=3661 GN=LOC111489052... [more]
A0A6J1BXY04.3e-1576.47uncharacterized protein LOC111006600 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
Match NameE-valueIdentityDescription
XP_008441321.13.19e-2279.71PREDICTED: uncharacterized protein LOC103485471 [Cucumis melo] >XP_011649953.1 u... [more]
XP_022134305.11.30e-2176.47uncharacterized protein LOC111006600 [Momordica charantia][more]
XP_022939393.11.30e-2176.81uncharacterized protein LOC111445324 [Cucurbita moschata] >XP_022992844.1 unchar... [more]
XP_022961461.11.34e-2176.81uncharacterized protein LOC111462035 [Cucurbita moschata] >XP_022990859.1 unchar... [more]
XP_021653637.11.56e-2073.91uncharacterized protein LOC110644967 [Hevea brasiliensis][more]
Match NameE-valueIdentityDescription
AT5G40980.15.9e-1773.53Protein of unknown function (DUF 3339) [more]
AT3G27027.11.1e-1567.65Protein of unknown function (DUF 3339) [more]
AT3G01940.18.0e-1464.18Protein of unknown function (DUF 3339) [more]
AT3G48660.11.8e-1057.58Protein of unknown function (DUF 3339) [more]
AT5G63500.15.4e-1053.03Protein of unknown function (DUF 3339) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021775Protein of unknown function DUF3339PFAMPF11820DUF3339coord: 3..58
e-value: 3.7E-15
score: 55.9
IPR021775Protein of unknown function DUF3339PANTHERPTHR33128OS05G0103400 PROTEINcoord: 1..58
NoneNo IPR availablePANTHERPTHR33128:SF64PROTEIN, PUTATIVE (DUF 3339)-RELATEDcoord: 1..58

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0006547IVF0006547gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0006547.2-exonIVF0006547.2-exon-chr03:1563951..1564043exon
IVF0006547.2-exonIVF0006547.2-exon-chr03:1564073..1564159exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0006547.2-cdsIVF0006547.2-cds-chr03:1563951..1564043CDS
IVF0006547.2-cdsIVF0006547.2-cds-chr03:1564073..1564159CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0006547.2IVF0006547.2-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane