IVF0005664.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0005664.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	tig00195367: 408300 .. 408905 (-)
Sequence length	606
RNA-Seq Expression	IVF0005664.1
Synteny	IVF0005664.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCCTCCCAATCTCTTTCTCTCTCTCTCTGAAAATCTCTCTCCAGTATCTTCAGTCACAGCATGGGTTTTTTCCCTTAAATCCAGCAGAGCTAATTGAGGTTTCTTCCAATGAATCATTTGTGAGTTTCTTCTTCTTCCTATTCTTTTGAGAAATGCAGGTGGGAACAGAAATTGAAGATGTGATGAAGGGGGAGGGAGAACAAAAGAAACAGAAGAACAGAAAGCTTAAGGCTGTGTGGGGATGTGTGGTATTAGTTTTGGTGAGTGTGTCAGGGGCGTTTTTAATGGGTTGGTGGGCAGTTCGGTTCCATAGATCACAGAAGCAACAGTGGATGGTACCTTTTAGTCTTGTTTTGATGATTGCTCCCATCTTCGTTTTGATCTCTGTTTCCATCTCCAGTTTCTGCAATTCCATGGACAGAATTTCTTCTTTAGTTTCATCCTTGGATCACGATCGCCCACCTGAAATTAGATGATAATCAACATTTACATATATTTTCTTTTTCTTTTTGGGAAAATGGGGACACTGGGGGCTCCACCTCCACCAATTTCTAGGGAAGCTTGTCTGCTTTAAGGCCAGTTCTAGTAGATTTCAAAGGGACCC

mRNA sequence

CCCCCTCCCAATCTCTTTCTCTCTCTCTCTGAAAATCTCTCTCCAGTATCTTCAGTCACAGCATGGGTTTTTTCCCTTAAATCCAGCAGAGCTAATTGAGGTTTCTTCCAATGAATCATTTGTGAGTTTCTTCTTCTTCCTATTCTTTTGAGAAATGCAGGTGGGAACAGAAATTGAAGATGTGATGAAGGGGGAGGGAGAACAAAAGAAACAGAAGAACAGAAAGCTTAAGGCTGTGTGGGGATGTGTGGTATTAGTTTTGGTGAGTGTGTCAGGGGCGTTTTTAATGGGTTGGTGGGCAGTTCGGTTCCATAGATCACAGAAGCAACAGTGGATGGTACCTTTTAGTCTTGTTTTGATGATTGCTCCCATCTTCGTTTTGATCTCTGTTTCCATCTCCAGTTTCTGCAATTCCATGGACAGAATTTCTTCTTTAGTTTCATCCTTGGATCACGATCGCCCACCTGAAATTAGATGATAATCAACATTTACATATATTTTCTTTTTCTTTTTGGGAAAATGGGGACACTGGGGGCTCCACCTCCACCAATTTCTAGGGAAGCTTGTCTGCTTTAAGGCCAGTTCTAGTAGATTTCAAAGGGACCC

Coding sequence (CDS)

ATGCAGGTGGGAACAGAAATTGAAGATGTGATGAAGGGGGAGGGAGAACAAAAGAAACAGAAGAACAGAAAGCTTAAGGCTGTGTGGGGATGTGTGGTATTAGTTTTGGTGAGTGTGTCAGGGGCGTTTTTAATGGGTTGGTGGGCAGTTCGGTTCCATAGATCACAGAAGCAACAGTGGATGGTACCTTTTAGTCTTGTTTTGATGATTGCTCCCATCTTCGTTTTGATCTCTGTTTCCATCTCCAGTTTCTGCAATTCCATGGACAGAATTTCTTCTTTAGTTTCATCCTTGGATCACGATCGCCCACCTGAAATTAGATGA

Protein sequence

MQVGTEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQWMVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR

Homology

[Close]

BLAST of IVF0005664.1 vs. ExPASy TrEMBL
Match: A0A5D3DB24 (Putative permease/transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00680 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.4e-51
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MQVGTEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60
           MQVGTEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW
Sbjct: 1   MQVGTEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60

Query: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR 108
           MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR
Sbjct: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR 107

[Close]

BLAST of IVF0005664.1 vs. ExPASy TrEMBL
Match: A0A0A0L8F5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118220 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.8e-51
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MQVGTEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60
           MQVG EIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW
Sbjct: 1   MQVGIEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60

Query: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR 108
           MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR
Sbjct: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR 107

[Close]

BLAST of IVF0005664.1 vs. ExPASy TrEMBL
Match: A0A0A0L5S1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118200 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 2   QVGTEIEDVMKGEGEQKKQKN--RKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQ 61
           + G  +E  MK E   KK+    +  K     + +V+  ++G  + GWW  +FH + +Q 
Sbjct: 14  EAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQL 73

Query: 62  WMVPFSLVLMIAPIFVLISVSISSFCNSMDR-ISSLVSSLDH 101
           WMVPFSLVLMIAPIFV++S+ IS+FCNSMD+  +S   S DH
Sbjct: 74  WMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 115

[Close]

BLAST of IVF0005664.1 vs. ExPASy TrEMBL
Match: A0A2P6SIS7 (Putative ATP-synthase-associated protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0360861 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 34/84 (40.48%), Postives = 46/84 (54.76%), Query Frame = 0


Query: 6  EIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQWMVPFS 65
          E ED    + E+   K R       C   +LVSV+G  L+GWW  ++H S +Q WMVPF 
Sbjct: 6  EDEDTSYSDLERSVVKRRA-----ACFGSILVSVAGGLLLGWWEYQYHPSYRQLWMVPFG 65

Query: 66 LVLMIAPIFVLISVSISSFCNSMD 90
          L+L   P+ V  S+ +S  CNS D
Sbjct: 66 LILFATPVIVWFSLVVSHICNSKD 84

[Close]

BLAST of IVF0005664.1 vs. ExPASy TrEMBL
Match: A0A7J8QU58 (Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_017722 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-07
Identity = 28/77 (36.36%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 14 EGEQKKQKNRKLKAV----WGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQWMVPFSLVLM 73
          E E+ ++K+ +LK +      C+   LVS+SGA ++GWW   +H +  Q W+VPF L+L 
Sbjct: 5  EEERLERKSEELKKIVDTCIACLWSFLVSLSGALMLGWWGYEYHPTNSQLWLVPFGLILF 64

Query: 74 IAPIFVLISVSISSFCN 87
          + P+ +  ++ +S FCN
Sbjct: 65 VTPLIIWFAIFVSCFCN 81

[Close]

BLAST of IVF0005664.1 vs. NCBI nr
Match: KAA0048855.1 (putative permease/transmembrane protein [Cucumis melo var. makuwa] >TYK20807.1 putative permease/transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 213 bits (541), Expect = 2.22e-69
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MQVGTEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60
           MQVGTEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW
Sbjct: 1   MQVGTEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60

Query: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR 107
           MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR
Sbjct: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR 107

[Close]

BLAST of IVF0005664.1 vs. NCBI nr
Match: KGN56386.1 (hypothetical protein Csa_010779 [Cucumis sativus])

HSP 1 Score: 210 bits (535), Expect = 1.82e-68
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MQVGTEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60
           MQVG EIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW
Sbjct: 1   MQVGIEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60

Query: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR 107
           MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR
Sbjct: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR 107

[Close]

BLAST of IVF0005664.1 vs. NCBI nr
Match: KGN56384.1 (hypothetical protein Csa_011278 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 2.20e-19
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 2   QVGTEIEDVMKGEGEQKKQKNRKLK----AVWGCVVLVLVSVSGAFLMGWWAVRFHRSQK 61
           + G  +E  MK E   KK +N  +K    A W  + +V+  ++G  + GWW  +FH + +
Sbjct: 14  EAGFPMESAMKEEDRDKK-RNGNMKSCKIATW-VISMVVACLTGGLVFGWWVFQFHPTNR 73

Query: 62  QQWMVPFSLVLMIAPIFVLISVSISSFCNSMDRIS-SLVSSLDH 100
           Q WMVPFSLVLMIAPIFV++S+ IS+FCNSMD+ + S   S DH
Sbjct: 74  QLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 115

[Close]

BLAST of IVF0005664.1 vs. NCBI nr
Match: KAF3973370.1 (hypothetical protein CMV_003195 [Castanea mollissima])

HSP 1 Score: 68.2 bits (165), Expect = 5.12e-12
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 14 EGEQKKQKNRKLKAVWGCVVL---VLVSVSGAFLMGWWAVRFHRSQKQQWMVPFSLVLMI 73
          EG+++    RK + V  C+V    ++VS+ G  +MGWW   +HR+ +Q WMVPF LVL+I
Sbjct: 6  EGKEESHGERK-ERVKSCIVYSWSLMVSMIGGLIMGWWEYEYHRTNRQLWMVPFGLVLLI 65

Query: 74 APIFVLISVSISSFCNS 87
           P FV  S+ +S +C+S
Sbjct: 66 TPPFVWFSIFVSDWCSS 81

[Close]

BLAST of IVF0005664.1 vs. NCBI nr
Match: GAV90789.1 (hypothetical protein CFOL_v3_34193 [Cephalotus follicularis])

HSP 1 Score: 66.2 bits (160), Expect = 1.74e-11
Identity = 33/88 (37.50%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 14  EGEQKKQKNRKLKAVW-GCVVLVLVSVSGAFLMGWWAVRFHRSQKQQWMVPFSLVLMIAP 73
           E E  K++   +   W  CV   LVS++G   +GWW  + H +  Q WMVPFSL+L++ P
Sbjct: 7   EKEIIKKEQENIGRTWIACVWSFLVSMTGGLTLGWWEYKHHPTNSQLWMVPFSLILLVTP 66

Query: 74  IFVLISVSISSFCNSMDRISSLVSSLDH 100
           + +  SV  S+ C+S    S  V+SL++
Sbjct: 67  VIIWFSVFSSAICDSRGGESQRVTSLNN 94

The following BLAST results are available for this feature:

BLAST of IVF0005664.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0005664.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DB24	1.4e-51	100.00	Putative permease/transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0L8F5	6.8e-51	99.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118220 PE=4 SV=1	[more]
A0A0A0L5S1	1.1e-13	44.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118200 PE=4 SV=1	[more]
A0A2P6SIS7	1.2e-07	40.48	Putative ATP-synthase-associated protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_...	[more]
A0A7J8QU58	2.1e-07	36.36	Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_017722 PE=4 SV...	[more]

BLAST of IVF0005664.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048855.1	2.22e-69	100.00	putative permease/transmembrane protein [Cucumis melo var. makuwa] >TYK20807.1 p...	[more]
KGN56386.1	1.82e-68	99.07	hypothetical protein Csa_010779 [Cucumis sativus]	[more]
KGN56384.1	2.20e-19	46.15	hypothetical protein Csa_011278 [Cucumis sativus]	[more]
KAF3973370.1	5.12e-12	42.86	hypothetical protein CMV_003195 [Castanea mollissima]	[more]
GAV90789.1	1.74e-11	37.50	hypothetical protein CFOL_v3_34193 [Cephalotus follicularis]	[more]

BLAST of IVF0005664.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032238	Putative ATP-synthase-associated protein	PFAM	PF16594	ATP-synt_Z	coord: 31..82 e-value: 8.7E-17 score: 60.4
None	No IPR available	PANTHER	PTHR35165	OS08G0113900 PROTEIN	coord: 6..104
None	No IPR available	PANTHER	PTHR35165:SF1	OS08G0113900 PROTEIN	coord: 6..104

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0005664	IVF0005664	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0005664.1-exon	IVF0005664.1-exon-tig00195367:408300..408905	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0005664.1-three_prime_utr	IVF0005664.1-three_prime_utr-tig00195367:408300..408427	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0005664.1-cds	IVF0005664.1-cds-tig00195367:408428..408751	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0005664.1-five_prime_utr	IVF0005664.1-five_prime_utr-tig00195367:408752..408905	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0005664.1	IVF0005664.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane