IVF0005219.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0005219.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ras-related protein RABA5b-like
Location	chr07: 22738334 .. 22738690 (-)
Sequence length	246
RNA-Seq Expression	IVF0005219.1
Synteny	IVF0005219.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAACCTTGTTTTGAACGACAACTCTGTTATCGGGAAATCGAAGTTCCTCTTGCCATTCCGTTGGAATGAGATTGATGATGTTAAGTACAAGGCCTCAATCGGCGTCGAGTTTCAGATTCAAGTGCTGACAGTCAATGGCAAAGAGGTTAAGTCTCTCATGTGAGACTTTTGTTTTCTTCATCTTATGTCTTTTAATCTAAAATTTATCCCTCGTGTCGTTTGTTCGATGCCATCTGAGAATTTCTCTTTCCTAATGTTTCCACTGATCAGATTTCAAGGTAGGGGATTCTTGGATGATGGGTTTTGGTGGAGGAATCCCAAACAAGAAAAAAGGCCTTTTAATAATCCCTAA

mRNA sequence

ATGTTCAACCTTGTTTTGAACGACAACTCTGTTATCGGGAAATCGAAGTTCCTCTTGCCATTCCGTTGGAATGAGATTGATGATGTTAAGTACAAGGCCTCAATCGGCGTCGAGTTTCAGATTCAAGTGCTGACAGTCAATGGCAAAGAGGTTAAGTCTCTCATATTTCAAGGTAGGGGATTCTTGGATGATGGGTTTTGGTGGAGGAATCCCAAACAAGAAAAAAGGCCTTTTAATAATCCCTAA

Coding sequence (CDS)

ATGTTCAACCTTGTTTTGAACGACAACTCTGTTATCGGGAAATCGAAGTTCCTCTTGCCATTCCGTTGGAATGAGATTGATGATGTTAAGTACAAGGCCTCAATCGGCGTCGAGTTTCAGATTCAAGTGCTGACAGTCAATGGCAAAGAGGTTAAGTCTCTCATATTTCAAGGTAGGGGATTCTTGGATGATGGGTTTTGGTGGAGGAATCCCAAACAAGAAAAAAGGCCTTTTAATAATCCCTAA

Protein sequence

MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLIFQGRGFLDDGFWWRNPKQEKRPFNNP

Homology

[Close]

BLAST of IVF0005219.1 vs. ExPASy Swiss-Prot
Match: Q9SRS5 (Ras-related protein RABA5b OS=Arabidopsis thaliana OX=3702 GN=RABA5B PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.3e-06
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 1  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLIFQGRG 60
          +F +VL  +S +GKS  L  F  +E  D   KA+IGVEFQ Q++ + GKEVK+ I+   G
Sbjct: 12 LFKIVLIGDSAVGKSNLLSRFSRDEF-DTNSKATIGVEFQTQLVEIEGKEVKAQIWDTAG 70

[Close]

BLAST of IVF0005219.1 vs. ExPASy Swiss-Prot
Match: P28187 (Ras-related protein RABA5c OS=Arabidopsis thaliana OX=3702 GN=RABA5C PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.1e-05
Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 1  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLIFQGRG 60
          +F +V+  +S +GKS  L  +  NE +    KA+IGVEFQ Q + ++GKEVK+ I+   G
Sbjct: 12 LFKIVIIGDSAVGKSNLLTRYARNEFNP-NSKATIGVEFQTQSMLIDGKEVKAQIWDTAG 70

[Close]

BLAST of IVF0005219.1 vs. ExPASy Swiss-Prot
Match: Q9FGK5 (Ras-related protein RABA5a OS=Arabidopsis thaliana OX=3702 GN=RABA5A PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.0e-05
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 1  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLIFQGRG 60
          +F +VL  +S +GKS  L  F  +E      K++IGVEFQ Q + +NGKE+K+ I+   G
Sbjct: 14 LFKIVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEIKAQIWDTAG 72

[Close]

BLAST of IVF0005219.1 vs. ExPASy Swiss-Prot
Match: Q9SIP0 (Ras-related protein RABA5d OS=Arabidopsis thaliana OX=3702 GN=RABA5D PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.0e-05
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 1  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLIFQGRG 60
          +F +V+  +S +GKS  L  +  NE  +   KA+IGVEFQ Q + + GKEVK+ I+   G
Sbjct: 12 LFKIVIIGDSAVGKSNLLSRYARNEF-NAHSKATIGVEFQTQNMEIEGKEVKAQIWDTAG 70

[Close]

BLAST of IVF0005219.1 vs. ExPASy Swiss-Prot
Match: P19892 (Ras-related protein RABA5e OS=Arabidopsis thaliana OX=3702 GN=RABA5E PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.0e-05
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 1  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLIFQGRG 60
          +F +V+  +S +GKS  L  +  NE      KA+IGVEFQ Q + + GKEVK+ I+   G
Sbjct: 12 LFKIVVIGDSAVGKSNLLSRYARNEF-SANSKATIGVEFQTQSMEIEGKEVKAQIWDTAG 70

[Close]

BLAST of IVF0005219.1 vs. ExPASy TrEMBL
Match: A0A0A0KVZ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011610 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.6e-28
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 1  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLIFQGRG 60
          MFNLVL DNSV+GKS  LLPF  NEI DV YKASIGVEFQIQVL +NGKEVKSLIF+ RG
Sbjct: 1  MFNLVLIDNSVLGKSNLLLPFCRNEI-DVNYKASIGVEFQIQVLKINGKEVKSLIFRSRG 60

Query: 61 FLDDGFWWRNPKQEKRPFNNP 82
          FLDDGFWWRNP+  K PFNNP
Sbjct: 61 FLDDGFWWRNPQTNKMPFNNP 80

[Close]

BLAST of IVF0005219.1 vs. ExPASy TrEMBL
Match: A0A5D3D0L2 (Ras-related protein RABA5b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001860 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLI 56
          MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSL+
Sbjct: 4  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLM 58

[Close]

BLAST of IVF0005219.1 vs. ExPASy TrEMBL
Match: A0A5A7TT53 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002930 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLI 56
          MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSL+
Sbjct: 4  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLM 58

[Close]

BLAST of IVF0005219.1 vs. ExPASy TrEMBL
Match: A0A7J9KE47 (Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_005829 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.5e-05
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 1  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLIFQGRG 60
          +F +VL  +S +GKS  L  F  NE D+   KA+IGVEFQ QV+ +NGKE+K+ I+   G
Sbjct: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDN-NSKATIGVEFQTQVVEINGKEIKAQIWDTAG 72

[Close]

BLAST of IVF0005219.1 vs. ExPASy TrEMBL
Match: A0A2P5YWG7 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A07G172700v1 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-04
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 1  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLIFQGRG 60
          +F +VL   S +GKS  L  F  NE D+   KA+IGVEFQ QV+ ++GKE+K+ I+   G
Sbjct: 14 LFKIVLRGESAVGKSNLLSRFARNEFDN-NSKATIGVEFQTQVVEIHGKEIKAQIWDTAG 72

[Close]

BLAST of IVF0005219.1 vs. NCBI nr
Match: KGN53014.1 (hypothetical protein Csa_015426 [Cucumis sativus])

HSP 1 Score: 133 bits (334), Expect = 1.26e-38
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 1  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLIFQGRG 60
          MFNLVL DNSV+GKS  LLPF  NEID V YKASIGVEFQIQVL +NGKEVKSLIF+ RG
Sbjct: 1  MFNLVLIDNSVLGKSNLLLPFCRNEID-VNYKASIGVEFQIQVLKINGKEVKSLIFRSRG 60

Query: 61 FLDDGFWWRNPKQEKRPFNNP 81
          FLDDGFWWRNP+  K PFNNP
Sbjct: 61 FLDDGFWWRNPQTNKMPFNNP 80

[Close]

BLAST of IVF0005219.1 vs. NCBI nr
Match: TYK17038.1 (ras-related protein RABA5b-like [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (276), Expect = 4.87e-30
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLI 55
          MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSL+
Sbjct: 4  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLM 58

[Close]

BLAST of IVF0005219.1 vs. NCBI nr
Match: KAA0044545.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (276), Expect = 4.50e-26
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLI 55
          MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSL+
Sbjct: 4  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLM 58

[Close]

BLAST of IVF0005219.1 vs. NCBI nr
Match: MBA0669252.1 (hypothetical protein [Gossypium klotzschianum])

HSP 1 Score: 53.9 bits (128), Expect = 4.98e-07
Identity = 28/60 (46.67%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 1  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLIFQGRG 60
          +F +VL  +S +GKS  L  F  NE D+   KA+IGVEFQ QV+ ++GKE+K+ I+   G
Sbjct: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDN-NSKATIGVEFQTQVVEIDGKEIKAQIWDTAG 72

[Close]

BLAST of IVF0005219.1 vs. NCBI nr
Match: MBA0844539.1 (hypothetical protein [Gossypium armourianum])

HSP 1 Score: 55.8 bits (133), Expect = 5.45e-07
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 1  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLIFQGRG 60
          +F +VL  +S +GKS  L  F  NE D+   KA+IGVEFQ QV+ +NGKE+K+ I+   G
Sbjct: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDN-NSKATIGVEFQTQVVEINGKEIKAQIWDTAG 72

[Close]

BLAST of IVF0005219.1 vs. TAIR 10
Match: AT3G07410.1 (RAB GTPase homolog A5B )

HSP 1 Score: 51.2 bits (121), Expect = 4.5e-07
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 1  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLIFQGRG 60
          +F +VL  +S +GKS  L  F  +E  D   KA+IGVEFQ Q++ + GKEVK+ I+   G
Sbjct: 12 LFKIVLIGDSAVGKSNLLSRFSRDEF-DTNSKATIGVEFQTQLVEIEGKEVKAQIWDTAG 70

[Close]

BLAST of IVF0005219.1 vs. TAIR 10
Match: AT2G43130.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 48.9 bits (115), Expect = 2.2e-06
Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 1  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLIFQGRG 60
          +F +V+  +S +GKS  L  +  NE +    KA+IGVEFQ Q + ++GKEVK+ I+   G
Sbjct: 12 LFKIVIIGDSAVGKSNLLTRYARNEFNP-NSKATIGVEFQTQSMLIDGKEVKAQIWDTAG 70

[Close]

BLAST of IVF0005219.1 vs. TAIR 10
Match: AT1G05810.1 (RAB GTPase homolog A5E )

HSP 1 Score: 47.8 bits (112), Expect = 5.0e-06
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 1   MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLIFQGRG 60
           +F +V+  +S +GKS  L  +  NE      KA+IGVEFQ Q + + GKEVK+ I+   G
Sbjct: 55  LFKIVVIGDSAVGKSNLLSRYARNEF-SANSKATIGVEFQTQSMEIEGKEVKAQIWDTAG 113

[Close]

BLAST of IVF0005219.1 vs. TAIR 10
Match: AT2G31680.1 (RAB GTPase homolog A5D )

HSP 1 Score: 47.8 bits (112), Expect = 5.0e-06
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 1  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLIFQGRG 60
          +F +V+  +S +GKS  L  +  NE  +   KA+IGVEFQ Q + + GKEVK+ I+   G
Sbjct: 12 LFKIVIIGDSAVGKSNLLSRYARNEF-NAHSKATIGVEFQTQNMEIEGKEVKAQIWDTAG 70

[Close]

BLAST of IVF0005219.1 vs. TAIR 10
Match: AT5G47520.1 (RAB GTPase homolog A5A )

HSP 1 Score: 47.8 bits (112), Expect = 5.0e-06
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 1  MFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLIFQGRG 60
          +F +VL  +S +GKS  L  F  +E      K++IGVEFQ Q + +NGKE+K+ I+   G
Sbjct: 14 LFKIVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEIKAQIWDTAG 72

The following BLAST results are available for this feature:

BLAST of IVF0005219.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRS5	6.3e-06	45.00	Ras-related protein RABA5b OS=Arabidopsis thaliana OX=3702 GN=RABA5B PE=1 SV=1	[more]
P28187	3.1e-05	41.67	Ras-related protein RABA5c OS=Arabidopsis thaliana OX=3702 GN=RABA5C PE=1 SV=1	[more]
Q9FGK5	7.0e-05	41.67	Ras-related protein RABA5a OS=Arabidopsis thaliana OX=3702 GN=RABA5A PE=1 SV=1	[more]
Q9SIP0	7.0e-05	41.67	Ras-related protein RABA5d OS=Arabidopsis thaliana OX=3702 GN=RABA5D PE=1 SV=1	[more]
P19892	7.0e-05	41.67	Ras-related protein RABA5e OS=Arabidopsis thaliana OX=3702 GN=RABA5E PE=2 SV=1	[more]

BLAST of IVF0005219.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVZ8	3.6e-28	80.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011610 PE=4 SV=1	[more]
A0A5D3D0L2	1.5e-21	98.18	Ras-related protein RABA5b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7TT53	1.5e-21	98.18	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A7J9KE47	5.5e-05	48.33	Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_005829 PE=4 S...	[more]
A0A2P5YWG7	1.2e-04	46.67	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A07G172700v1 PE...	[more]

BLAST of IVF0005219.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53014.1	1.26e-38	80.25	hypothetical protein Csa_015426 [Cucumis sativus]	[more]
TYK17038.1	4.87e-30	98.18	ras-related protein RABA5b-like [Cucumis melo var. makuwa]	[more]
KAA0044545.1	4.50e-26	98.18	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
MBA0669252.1	4.98e-07	46.67	hypothetical protein [Gossypium klotzschianum]	[more]
MBA0844539.1	5.45e-07	48.33	hypothetical protein [Gossypium armourianum]	[more]

BLAST of IVF0005219.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07410.1	4.5e-07	45.00	RAB GTPase homolog A5B	[more]
AT2G43130.1	2.2e-06	41.67	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G05810.1	5.0e-06	41.67	RAB GTPase homolog A5E	[more]
AT2G31680.1	5.0e-06	41.67	RAB GTPase homolog A5D	[more]
AT5G47520.1	5.0e-06	41.67	RAB GTPase homolog A5A	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0005219	IVF0005219	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0005219.1-exon	IVF0005219.1-exon-chr07:22738334..22738415	exon
IVF0005219.1-exon	IVF0005219.1-exon-chr07:22738527..22738690	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0005219.1-cds	IVF0005219.1-cds-chr07:22738334..22738415	CDS
IVF0005219.1-cds	IVF0005219.1-cds-chr07:22738527..22738690	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0005219.1	IVF0005219.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0008270	zinc ion binding