IVF0004113.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0004113.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr08: 17042825 .. 17043110 (-)
Sequence length	246
RNA-Seq Expression	IVF0004113.1
Synteny	IVF0004113.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAGGGGAAGGAAGTGGAAGCAAATATTGCTACCACAGAGAAAGAGTTAGTGGGAGGATCGTCCTCTAAGACTAGAGTTGGACCTTCACAAATAAAGAAGAAGGGAAAGGGGAAGACTCCCAAGAATAGTAAGGGAAAGAAAGTTGCTAAAGGTAAATGTTATCACTGCAACGAGGACGATCATTGGTTGAGGAATTGTCCAGAGTACCTTGCTGAAAAGAAAGCTGAGAAGGAAGCACAAGGTAAATATGATTTACTTGCTATTGAAACATGCTTATTAG

mRNA sequence

ATGGGTAAGGGGAAGGAAGTGGAAGCAAATATTGCTACCACAGAGAAAGAGTTAGTGGGAGGATCGTCCTCTAAGACTAGAGTTGGACCTTCACAAATAAAGAAGAAGGGAAAGGGGAAGACTCCCAAGAATAGTAAGGGAAAGAAAGTTGCTAAAGGAATTGTCCAGAGTACCTTGCTGAAAAGAAAGCTGAGAAGGAAGCACAAGGTAAATATGATTTACTTGCTATTGAAACATGCTTATTAG

Coding sequence (CDS)

ATGGGTAAGGGGAAGGAAGTGGAAGCAAATATTGCTACCACAGAGAAAGAGTTAGTGGGAGGATCGTCCTCTAAGACTAGAGTTGGACCTTCACAAATAAAGAAGAAGGGAAAGGGGAAGACTCCCAAGAATAGTAAGGGAAAGAAAGTTGCTAAAGGAATTGTCCAGAGTACCTTGCTGAAAAGAAAGCTGAGAAGGAAGCACAAGGTAAATATGATTTACTTGCTATTGAAACATGCTTATTAG

Protein sequence

MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGIVQSTLLKRKLRRKHKVNMIYLLLKHAY

Homology

[Close]

BLAST of IVF0004113.1 vs. ExPASy TrEMBL
Match: A0A5D3E1U5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001090 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.2e-17
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKG 54
           MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKG
Sbjct: 71  MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKG 123

[Close]

BLAST of IVF0004113.1 vs. ExPASy TrEMBL
Match: A0A5A7T0L9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00290 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-16
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1   MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKG 54
           MGKGKEVEANIAT EKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKG
Sbjct: 71  MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKG 123

[Close]

BLAST of IVF0004113.1 vs. ExPASy TrEMBL
Match: A0A5A7TUI5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00480 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.7e-15
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 1  MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKG 54
          MGKGKEVEAN+ATTEKELV GSSSKTRVGPSQIKKK KGK PKNSKGKKVAKG
Sbjct: 34 MGKGKEVEANVATTEKELVRGSSSKTRVGPSQIKKKRKGKNPKNSKGKKVAKG 86

[Close]

BLAST of IVF0004113.1 vs. ExPASy TrEMBL
Match: A0A5D3CUE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00840 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAK 53
           MGK KEVEAN+ATTEKELVGGSSSKTRVGPSQ+KKK KGKTPKN KGKKVAK
Sbjct: 53  MGKKKEVEANVATTEKELVGGSSSKTRVGPSQMKKKRKGKTPKNIKGKKVAK 104

[Close]

BLAST of IVF0004113.1 vs. ExPASy TrEMBL
Match: A0A5D3CA75 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1300G00080 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.2e-13
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKG 54
          MGKGK+VEAN+ T +KELVGGSSSKTRVGPSQ+KKK KGK PKNSKGKKV KG
Sbjct: 1  MGKGKQVEANVTTIDKELVGGSSSKTRVGPSQMKKKRKGKNPKNSKGKKVVKG 53

[Close]

BLAST of IVF0004113.1 vs. NCBI nr
Match: TYK29862.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 4.03e-24
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKG 53
           MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKG
Sbjct: 71  MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKG 123

[Close]

BLAST of IVF0004113.1 vs. NCBI nr
Match: KAA0035756.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 3.24e-23
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1   MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKG 53
           MGKGKEVEANIAT EKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKG
Sbjct: 71  MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKG 123

[Close]

BLAST of IVF0004113.1 vs. NCBI nr
Match: KAA0045181.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK27371.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 3.26e-21
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 1  MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKG 53
          MGKGKEVEAN+ATTEKELV GSSSKTRVGPSQIKKK KGK PKNSKGKKVAKG
Sbjct: 34 MGKGKEVEANVATTEKELVRGSSSKTRVGPSQIKKKRKGKNPKNSKGKKVAKG 86

[Close]

BLAST of IVF0004113.1 vs. NCBI nr
Match: KAA0054225.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK15040.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 7.16e-20
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAK 52
           MGK KEVEAN+ATTEKELVGGSSSKTRVGPSQ+KKK KGKTPKN KGKKVAK
Sbjct: 53  MGKKKEVEANVATTEKELVGGSSSKTRVGPSQMKKKRKGKTPKNIKGKKVAK 104

[Close]

BLAST of IVF0004113.1 vs. NCBI nr
Match: TYK08781.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 4.94e-19
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKG 53
          MGKGK+VEAN+ T +KELVGGSSSKTRVGPSQ+KKK KGK PKNSKGKKV KG
Sbjct: 1  MGKGKQVEANVTTIDKELVGGSSSKTRVGPSQMKKKRKGKNPKNSKGKKVVKG 53

The following BLAST results are available for this feature:

BLAST of IVF0004113.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004113.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E1U5	2.2e-17	100.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G0010...	[more]
A0A5A7T0L9	1.1e-16	98.11	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G0029...	[more]
A0A5A7TUI5	7.7e-15	92.45	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G0048...	[more]
A0A5D3CUE8	1.1e-13	90.38	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00840...	[more]
A0A5D3CA75	4.2e-13	83.02	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1300G000...	[more]

BLAST of IVF0004113.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29862.1	4.03e-24	100.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035756.1	3.24e-23	98.11	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0045181.1	3.26e-21	92.45	gag/pol protein [Cucumis melo var. makuwa] >TYK27371.1 gag/pol protein [Cucumis ...	[more]
KAA0054225.1	7.16e-20	90.38	gag/pol protein [Cucumis melo var. makuwa] >TYK15040.1 gag/pol protein [Cucumis ...	[more]
TYK08781.1	4.94e-19	83.02	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0004113.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..47

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0004113	IVF0004113	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0004113.1-exon	IVF0004113.1-exon-chr08:17042825..17042913	exon
IVF0004113.1-exon	IVF0004113.1-exon-chr08:17042954..17043110	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0004113.1-cds	IVF0004113.1-cds-chr08:17042825..17042913	CDS
IVF0004113.1-cds	IVF0004113.1-cds-chr08:17042954..17043110	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0004113.1	IVF0004113.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding