IVF0003844.2 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0003844.2
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr02: 12667993 .. 12668620 (+)
Sequence length	628
RNA-Seq Expression	IVF0003844.2
Synteny	IVF0003844.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTGTTTCCCTAATTCAATCCTTCTCTTAGTTAACAACCATTTTCACGCTCCCAATTGAAATAACCATGGCCTCAATTAAGCTACCACTTGTATTCTTTGTTTGCATGGCCATTTTAGCAGTATCCGGCATTGCACACACCGGGGCAGCGGCACCTTCTGATCCTTTCACAGCAGAAGAATTGTCATTGTTGGGTTGCACATCCTTCATTTCTGAGGCAACAAAATGTGTGATTGATGTAATGAAAAATGCAGTTGCTCCTCATCCATCATGTTGCAAAGCATTTTCTAAGCTCAATGATTGTTCCCCTGAGTTTCTCAAAGGCATTCCCTCGGCTGACATGATTTTGATTAAAGGAATTTGTGCTTTGTGGGGTGTTTGATCAATTTCCTAGACTAAAGCATTTTTTAGTTAATAATATATAGGATCATTAGGAATAACAACATTATCATTTCTCCTCTACCTATTTTATGAATTTGAAGAAAGAGTGGATTTTGTTAGAGGGAAATTGTGTTGTTTGATCCGTTAATTGAATGAGAACTTAACATTTTGTTACTGTTTGTCAAAGCCCATTTAATTTGTACTTTTGAACGCTCCACTCCTCCAAACTTCTAAAACCAACAAGGAG

mRNA sequence

CACTGTTTCCCTAATTCAATCCTTCTCTTAGTTAACAACCATTTTCACGCTCCCAATTGAAATAACCATGGCCTCAATTAAGCTACCACTTGTATTCTTTGTTTGCATGGCCATTTTAGCAGTATCCGGCATTGCACACACCGGGGCAGCGGCACCTTCTGATCCTTTCACAGCAGAAGAATTGTCATTGTTGGGTTGCACATCCTTCATTTCTGAGGCAACAAAATGTGTGATTGATGTAATGAAAAATGCAGTTGCTCCTCATCCATCATGTTGCAAAGCATTTTCTAAGCTCAATGATTGTTCCCCTGAGTTTCTCAAAGGCATTCCCTCGGCTGACATGATTTTGATTAAAGGAATTTGTGCTTTGTGGGGTGTTTGATCAATTTCCTAGACTAAAGCATTTTTTAGTTAATAATATATAGGATCATTAGGAATAACAACATTATCATTTCTCCTCTACCTATTTTATGAATTTGAAGAAAGAGTGGATTTTGTTAGAGGGAAATTGTGTTGTTTGATCCGTTAATTGAATGAGAACTTAACATTTTGTTACTGTTTGTCAAAGCCCATTTAATTTGTACTTTTGAACGCTCCACTCCTCCAAACTTCTAAAACCAACAAGGAG

Coding sequence (CDS)

ATGGCCTCAATTAAGCTACCACTTGTATTCTTTGTTTGCATGGCCATTTTAGCAGTATCCGGCATTGCACACACCGGGGCAGCGGCACCTTCTGATCCTTTCACAGCAGAAGAATTGTCATTGTTGGGTTGCACATCCTTCATTTCTGAGGCAACAAAATGTGTGATTGATGTAATGAAAAATGCAGTTGCTCCTCATCCATCATGTTGCAAAGCATTTTCTAAGCTCAATGATTGTTCCCCTGAGTTTCTCAAAGGCATTCCCTCGGCTGACATGATTTTGATTAAAGGAATTTGTGCTTTGTGGGGTGTTTGA

Protein sequence

MASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMKNAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV

Homology

[Close]

BLAST of IVF0003844.2 vs. ExPASy TrEMBL
Match: A0A5D3CG41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00010 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 2.9e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMK 60
           MASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMK
Sbjct: 1   MASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMK 60

Query: 61  NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 105
           NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV
Sbjct: 61  NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of IVF0003844.2 vs. ExPASy TrEMBL
Match: A0A5A7U483 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00620 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 8.6e-51
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMK 60
           MASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAE+LSLLGCTSFISEATKCVIDVMK
Sbjct: 1   MASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEKLSLLGCTSFISEATKCVIDVMK 60

Query: 61  NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 105
           NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV
Sbjct: 61  NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of IVF0003844.2 vs. ExPASy TrEMBL
Match: A0A5D3CFS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00210 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.1e-26
Identity = 65/103 (63.11%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 2   ASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMKN 61
           A  KLPLV  VC+AILA S  A     A + P T+E+ SL  C SF+ +ATKCVIDV+KN
Sbjct: 5   AITKLPLVLLVCIAILASSVTARPTIVAAATP-TSEDFSLFPCISFVPKATKCVIDVLKN 64

Query: 62  AVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 105
           AVAPHPSCC+A S+L+DCS +FLK IPS+DMIL+K ICA WGV
Sbjct: 65  AVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGV 106

[Close]

BLAST of IVF0003844.2 vs. ExPASy TrEMBL
Match: A0A5A7U9B0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00630 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.7e-25
Identity = 63/103 (61.17%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 2   ASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMKN 61
           A  KLPLV  VC+AILA S  A     A + P T+E+ SL  C SF+ +ATKCVIDV+KN
Sbjct: 5   AITKLPLVLRVCIAILASSVTACPTIVAAATP-TSEDFSLFPCISFVPKATKCVIDVLKN 64

Query: 62  AVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 105
            VAPHPSCC+A ++L+DCS +FLK IPS DMIL+K ICA WGV
Sbjct: 65  VVAPHPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGV 106

[Close]

BLAST of IVF0003844.2 vs. ExPASy TrEMBL
Match: A0A5D3CEQ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00180 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.8e-24
Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 5   KLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMKNAVA 64
           KLPL    C+ ILA S +A     A + P    ++SL  C SF+ +AT+CVIDV+KNAVA
Sbjct: 7   KLPLALLFCIFILASSVMARPVTVAAAAPI--GDISLFPCKSFVPKATECVIDVLKNAVA 66

Query: 65  PHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 105
           PHPSCC+A S+L+DCS +FLK IPS DMIL+K ICALWGV
Sbjct: 67  PHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGV 104

[Close]

BLAST of IVF0003844.2 vs. NCBI nr
Match: TYK10330.1 (hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (531), Expect = 5.96e-68
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMK 60
           MASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMK
Sbjct: 1   MASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMK 60

Query: 61  NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104
           NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV
Sbjct: 61  NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of IVF0003844.2 vs. NCBI nr
Match: KAA0050078.1 (hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 207 bits (527), Expect = 2.43e-67
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMK 60
           MASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAE+LSLLGCTSFISEATKCVIDVMK
Sbjct: 1   MASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEKLSLLGCTSFISEATKCVIDVMK 60

Query: 61  NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104
           NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV
Sbjct: 61  NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of IVF0003844.2 vs. NCBI nr
Match: KAE8653021.1 (hypothetical protein Csa_004567 [Cucumis sativus])

HSP 1 Score: 191 bits (486), Expect = 4.37e-61
Identity = 93/104 (89.42%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMK 60
           MAS+KLPLVF VC+AILAVSG+AHTGA AP+DPFTAEE SLLGCTSFISEAT C++DVMK
Sbjct: 1   MASMKLPLVFLVCIAILAVSGMAHTGALAPADPFTAEEFSLLGCTSFISEATNCMVDVMK 60

Query: 61  NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104
           NAVAPHPSCCKAFSKLNDCS EFLKGIPSADMILIKGICALWGV
Sbjct: 61  NAVAPHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of IVF0003844.2 vs. NCBI nr
Match: TYK10345.1 (hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (319), Expect = 1.46e-35
Identity = 65/103 (63.11%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 2   ASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMKN 61
           A  KLPLV  VC+AILA S  A     A + P T+E+ SL  C SF+ +ATKCVIDV+KN
Sbjct: 5   AITKLPLVLLVCIAILASSVTARPTIVAAATP-TSEDFSLFPCISFVPKATKCVIDVLKN 64

Query: 62  AVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104
           AVAPHPSCC+A S+L+DCS +FLK IPS+DMIL+K ICA WGV
Sbjct: 65  AVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGV 106

[Close]

BLAST of IVF0003844.2 vs. NCBI nr
Match: KAG6589812.1 (hypothetical protein SDJN03_15235, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122 bits (307), Expect = 6.84e-34
Identity = 65/100 (65.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 5   KLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMKNAVA 64
           KL     VC+AILA      + A AP DPF AE  SL GCTS +SE TKCV+DVMK AVA
Sbjct: 2   KLAAACLVCIAILA------SPAMAP-DPFAAEGFSLFGCTSAVSEMTKCVVDVMKQAVA 61

Query: 65  PHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104
           PHPSCC+A SKLN CS  FLK +PSADM LIK +CALWGV
Sbjct: 62  PHPSCCRAISKLNRCSSVFLKDVPSADMFLIKTVCALWGV 94

The following BLAST results are available for this feature:

BLAST of IVF0003844.2 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003844.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CG41	2.9e-51	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U483	8.6e-51	99.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CFS6	1.1e-26	63.11	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9B0	4.7e-25	61.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CEQ4	6.8e-24	59.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0003844.2 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK10330.1	5.96e-68	100.00	hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa]	[more]
KAA0050078.1	2.43e-67	99.04	hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa]	[more]
KAE8653021.1	4.37e-61	89.42	hypothetical protein Csa_004567 [Cucumis sativus]	[more]
TYK10345.1	1.46e-35	63.11	hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa]	[more]
KAG6589812.1	6.84e-34	65.00	hypothetical protein SDJN03_15235, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of IVF0003844.2 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0003844	IVF0003844	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0003844.2-five_prime_utr	IVF0003844.2-five_prime_utr-chr02:12667993..12668059	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0003844.2-exon	IVF0003844.2-exon-chr02:12667993..12668620	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0003844.2-cds	IVF0003844.2-cds-chr02:12668060..12668374	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0003844.2-three_prime_utr	IVF0003844.2-three_prime_utr-chr02:12668375..12668620	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0003844.2	IVF0003844.2-protein	polypeptide