IVF0002916.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0002916.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr04: 7524030 .. 7524642 (+)
Sequence length	393
RNA-Seq Expression	IVF0002916.1
Synteny	IVF0002916.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGGAAGAAAGGGATCGGCTTGGCTAAGGTAGGGAAAACGACTCGGGTAGGTGGCTCACACGCACAGGACAGCTCGCACGCGCAGGGGCGGGTCGACTGGAGTTGCGTGTGGCTCAGGTTGGTGGTTCACACACGCAAGGCAGCTCGGGTTAGCCCACGAAGGGACAGCTCAGGCGACAACTTGCCTGGAAGTGACTCACTGGTCGACTTCGACGATGACGGCCGGTGACAGTTCGTCGATGGTTGCTGCTCGATAGGACAACCCGACTGAAAGCGACTGGCTGTTGAACAGAGACAGAGACAGACGAATGACGCGGTGGCAACGACGGAATGAGGCGACGGCTGACAGAACACCTCAAACGGCGGACGATCTTATAGCTGGGCTTCGGTTGACGGTGCGATGAGGCTCATTGACGGCTGCTAGACGAAGACCACGCGACGTGACGACTAGCTGCGAAAGAAGATCGGCTCGACTTGTATGACGAAAACTCGAGTGTTTGCTGCTGAAGGCTCGCAGCAGGGATCGAAGAGGGTGGTGGCGTGGCGGAGCAAAAGTGGCTGGGGTTCTCTTTATAGGGGTTAGGGTTCCAAATGAAGAAGATGAATAG

mRNA sequence

ATGGATTGGAAGAAAGGGATCGGCTTGGCTAAGGACAGCTCGCACGCGCAGGGGCGGGTCGACTGGAGTTGCGTGTGGCTCAGGTTGGTGGTTCACACACGCAAGGCAGCTCGGGTTAGCCCACGAAGGGACAGCTCAGGCGACAACTTGCCTGGAAGTGACTCACTGGTCGACTTCGACGATGACGGCCGAGACAGAGACAGACGAATGACGCGGTGGCAACGACGGAATGAGGCGACGGCTGACAGAACACCTCAAACGGCGGACGATCTTATAGCTGGGCTTCGGTTGACGGCTCGCAGCAGGGATCGAAGAGGGTGGTGGCGTGGCGGAGCAAAAGTGGCTGGGGTTCTCTTTATAGGGGTTAGGGTTCCAAATGAAGAAGATGAATAG

Coding sequence (CDS)

ATGGATTGGAAGAAAGGGATCGGCTTGGCTAAGGACAGCTCGCACGCGCAGGGGCGGGTCGACTGGAGTTGCGTGTGGCTCAGGTTGGTGGTTCACACACGCAAGGCAGCTCGGGTTAGCCCACGAAGGGACAGCTCAGGCGACAACTTGCCTGGAAGTGACTCACTGGTCGACTTCGACGATGACGGCCGAGACAGAGACAGACGAATGACGCGGTGGCAACGACGGAATGAGGCGACGGCTGACAGAACACCTCAAACGGCGGACGATCTTATAGCTGGGCTTCGGTTGACGGCTCGCAGCAGGGATCGAAGAGGGTGGTGGCGTGGCGGAGCAAAAGTGGCTGGGGTTCTCTTTATAGGGGTTAGGGTTCCAAATGAAGAAGATGAATAG

Protein sequence

MDWKKGIGLAKDSSHAQGRVDWSCVWLRLVVHTRKAARVSPRRDSSGDNLPGSDSLVDFDDDGRDRDRRMTRWQRRNEATADRTPQTADDLIAGLRLTARSRDRRGWWRGGAKVAGVLFIGVRVPNEEDE

Homology

The following BLAST results are available for this feature:

BLAST of IVF0002916.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002916.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002916.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002916.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..83

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0002916	IVF0002916	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0002916.1-exon	IVF0002916.1-exon-chr04:7524030..7524062	exon
IVF0002916.1-exon	IVF0002916.1-exon-chr04:7524102..7524259	exon
IVF0002916.1-exon	IVF0002916.1-exon-chr04:7524327..7524429	exon
IVF0002916.1-exon	IVF0002916.1-exon-chr04:7524544..7524642	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0002916.1-cds	IVF0002916.1-cds-chr04:7524030..7524062	CDS
IVF0002916.1-cds	IVF0002916.1-cds-chr04:7524102..7524259	CDS
IVF0002916.1-cds	IVF0002916.1-cds-chr04:7524327..7524429	CDS
IVF0002916.1-cds	IVF0002916.1-cds-chr04:7524544..7524642	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0002916.1	IVF0002916.1-protein	polypeptide