IVF0002100.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0002100.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr04: 12932489 .. 12934073 (+)
Sequence length	1585
RNA-Seq Expression	IVF0002100.1
Synteny	IVF0002100.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGAAACAATCAACTATAGTGGTTCGACCAATTTGGTCTACATCCACTTTGAGAACCAGCTTGGAGGGATTTTATTAACAGCAATTCAAAGAAAAATTACAGAAAACAACACAATAAAATGTAATCTGTAATTTTACCGTCGTATACGACTTTACCGTCGATCAAACACCAAATATATGAGAGAACCACGTGCCGGATGTCGCCTTTGATACCAAGACTCAAAATCTACCGGAAACCGCCTTCTTTAATTGAAGACCCACGTATAGAAGTACCCACACAAGTTAAACAACCCACGGTAGAACTTCGTCACCACCAAACCCGCCGAAAAAACAAGCGTCACAGACCTAGAACAACGCCGCTGAACCCAACCGTCACAACACGCCGGAAGAACACGATGTTACTGCCTGAAAAATGGAGACCCAATACGCCGAAATGCCACCGTCCAATCACAATGCCGTCAACGCCGCTGGACGCCGGAAGAATGCCGCTCCTCTCCGTCTAACTCGTCGGACACACGTCACAACACCCACCACGAATGTTTCTTCTCCTTGTGTGTGAAACAAAATTTCTCTCTCTCTACTGTGTTTGCGGCTGCCCCTTTCTCCTCTCCTTTTTCATCTTCTTTTCTTTCCTTTCTAACCTAAAGTAAAGAAGATAAGAGTAATTGCAAAAATGCCATTAAGGCATAATTACTATTCTACCCTCAACTTAAAAAACCTATATTTAACCCCTTAAATGTTTGTCACTTTTTCTACAAATCTCCCTCATGACAAACTATTTAAGTCACCAAACTGATTCTCCCAACCACCTCATCATTCAGAATTAACCTTCAGCTCAGACCGGTATTTAAACCTATGAGCTGGAAGAACCTTTGCTACCAACCTAGCATTATATCTAGGCTTACTGTCACCTCTTTGCTTAAACCACTTTGGTTGAATGAGTTTTTGAATAGGAGGCTTTGTAACCAGTGACCATGTCTGATTCTTTCGCAAAATAAACAACTCTGCTTCCATAGCATCTTTCCATTGTTTCTTCAAATTAAATGCAATATTGTCACTACAAACTCCCTCATTAATCAAAGTCCTCTCTTGTTGTGACTGTACACCATCAAATTCAGACTTCTCTGTAGCCTCTATTTGTGAAACTAGTGGTGATTGATCACTAAATATATCTGAACCTTTGCCTGATGACTGTACACCATCAATTCTAATATCTGTCACAACATGATCAACTATCTGTTGTTTCTGTTGCTTTAATGCCTTAGTGGCACTACTTGAAACTGCATTACCCTCCAACACATACAGATCATTCTTCAATGTTCCCCTCAATTTAACCAAAGAACCCTTGGTAACTTTCATAATTCCATTCTCATATTTTATGGTATAACATGATCTATCTAATTCATCTAGAGATATTAGATTACGTTTGAGTTCTGGAACATACCTTACATTTGTAAGCATTCTGATCATCCCGTCATGTGTTGCAATTAGAACTGAGCCAGTTCCCTTTACTTCACAGGTACCATTATCACCCAATAAGACTTTTCCCCCATCGCTTTTCTGAAAGTTAATCAAAAAATCCTGAT

mRNA sequence

GCGAAACAATCAACTATAGTGGTTCGACCAATTTGGTCTACATCCACTTTGAGAACCAGCTTGGAGGGATTTTATTAACAGCAATTCAAAGAAAAATTACAGAAAACAACACAATAAAATGTAATCTGTAATTTTACCGTCGTATACGACTTTACCGTCGATCAAACACCAAATATATGAGAGAACCACGTGCCGGATGTCGCCTTTGATACCAAGACTCAAAATCTACCGGAAACCGCCTTCTTTAATTGAAGACCCACGTATAGAAGTACCCACACAAGTTAAACAACCCACGGTAGAACTTCGTCACCACCAAACCCGCCGAAAAAACAAGCGTCACAGACCTAGAACAACGCCGCTGAACCCAACCGTCACAACACGCCGGAAGAACACGATGTTACTGCCTGAAAAATGGAGACCCAATACGCCGAAATGCCACCGTCCAATCACAATGCCGTCAACGCCGCTGGACGCCGGAAGAATGCCGCTCCTCTCCGTCTAACTCGTCGGACACACGTCACAACACCCACCACGAATGTTTCTTCTCCTTGTGTGTGAAACAAAATTTCTCTCTCTCTACTGTGTTTGCGGCTGCCCCTTTCTCCTCTCCTTTTTCATCTTCTTTTCTTTCCTTTCTAACCTAAAGTAAAGAAGATAAGAGTAATTGCAAAAATGCCATTAAGGCATAATTACTATTCTACCCTCAACTTAAAAAACCTATATTTAACCCCTTAAATGTTTGTCACTTTTTCTACAAATCTCCCTCATGACAAACTATTTAAGTCACCAAACTGATTCTCCCAACCACCTCATCATTCAGAATTAACCTTCAGCTCAGACCGGTATTTAAACCTATGAGCTGGAAGAACCTTTGCTACCAACCTAGCATTATATCTAGGCTTACTGTCACCTCTTTGCTTAAACCACTTTGGTTGAATGAGTTTTTGAATAGGAGGCTTTGTAACCAGTGACCATGTCTGATTCTTTCGCAAAATAAACAACTCTGCTTCCATAGCATCTTTCCATTGTTTCTTCAAATTAAATGCAATATTGTCACTACAAACTCCCTCATTAATCAAAGTCCTCTCTTGTTGTGACTGTACACCATCAAATTCAGACTTCTCTGTAGCCTCTATTTGTGAAACTAGTGGTGATTGATCACTAAATATATCTGAACCTTTGCCTGATGACTGTACACCATCAATTCTAATATCTGTCACAACATGATCAACTATCTGTTGTTTCTGTTGCTTTAATGCCTTAGTGGCACTACTTGAAACTGCATTACCCTCCAACACATACAGATCATTCTTCAATGTTCCCCTCAATTTAACCAAAGAACCCTTGGTAACTTTCATAATTCCATTCTCATATTTTATGGTATAACATGATCTATCTAATTCATCTAGAGATATTAGATTACGTTTGAGTTCTGGAACATACCTTACATTTGTAAGCATTCTGATCATCCCGTCATGTGTTGCAATTAGAACTGAGCCAGTTCCCTTTACTTCACAGGTACCATTATCACCCAATAAGACTTTTCCCCCATCGCTTTTCTGAAAGTTAATCAAAAAATCCTGAT

Coding sequence (CDS)

ATGTCGCCTTTGATACCAAGACTCAAAATCTACCGGAAACCGCCTTCTTTAATTGAAGACCCACGTATAGAAGTACCCACACAAGTTAAACAACCCACGGTAGAACTTCGTCACCACCAAACCCGCCGAAAAAACAAGCGTCACAGACCTAGAACAACGCCGCTGAACCCAACCGTCACAACACGCCGGAAGAACACGATGTTACTGCCTGAAAAATGGAGACCCAATACGCCGAAATGCCACCGTCCAATCACAATGCCGTCAACGCCGCTGGACGCCGGAAGAATGCCGCTCCTCTCCGTCTAA

Protein sequence

MSPLIPRLKIYRKPPSLIEDPRIEVPTQVKQPTVELRHHQTRRKNKRHRPRTTPLNPTVTTRRKNTMLLPEKWRPNTPKCHRPITMPSTPLDAGRMPLLSV

Homology

The following BLAST results are available for this feature:

BLAST of IVF0002100.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002100.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002100.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002100.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..101

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0002100	IVF0002100	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0002100.1-five_prime_utr	IVF0002100.1-five_prime_utr-chr04:12932489..12932684	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0002100.1-exon	IVF0002100.1-exon-chr04:12932489..12934073	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0002100.1-cds	IVF0002100.1-cds-chr04:12932685..12932990	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0002100.1-three_prime_utr	IVF0002100.1-three_prime_utr-chr04:12932991..12934073	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0002100.1	IVF0002100.1-protein	polypeptide