IVF0001179.2 (mRNA) Melon (IVF77) v1

Overview
NameIVF0001179.2
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr05: 13554963 .. 13555295 (-)
Sequence length333
RNA-Seq ExpressionIVF0001179.2
SyntenyIVF0001179.2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAACTATGCTAGAGAAAGTTCAAGCTGAGAATGCCAAACTTAAGCAGATAGTATCTCAACAGCAAGAACAGCTGGGAAAGTTCACGAAAAATAAAGATCAATTGTCCTTCACGGTCTCTAACCTTACCTCTCTACTTATCACGCAGTCTGATTTGATGTGGCAGATAGGCGAGGGACGTGATAGTCAGTTTAGAGCTTCCATGGAGTATACTCATGCAGTGTTTGTCCAACGTGTGCCTCAACCTGTCATTCTGCTTGAACTAGAAGCACCTTCCCCACCTATTCAACAAGAAAATCTTGGCGCCCCTGACCCCTGCAATAAGAACTAA

mRNA sequence

ATGACAACTATGCTAGAGAAAGTTCAAGCTGAGAATGCCAAACTTAAGCAGATAGTATCTCAACAGCAAGAACAGCTGGGAAAGTTCACGAAAAATAAAGATCAATTGTCCTTCACGGTCTCTAACCTTACCTCTCTACTTATCACGCAGTCTGATTTGATGTGGCAGATAGGCGAGGGACGTGATAGTCAGTTTAGAGCTTCCATGGAGTATACTCATGCAGTGTTTGTCCAACGTGTGCCTCAACCTGTCATTCTGCTTGAACTAGAAGCACCTTCCCCACCTATTCAACAAGAAAATCTTGGCGCCCCTGACCCCTGCAATAAGAACTAA

Coding sequence (CDS)

ATGACAACTATGCTAGAGAAAGTTCAAGCTGAGAATGCCAAACTTAAGCAGATAGTATCTCAACAGCAAGAACAGCTGGGAAAGTTCACGAAAAATAAAGATCAATTGTCCTTCACGGTCTCTAACCTTACCTCTCTACTTATCACGCAGTCTGATTTGATGTGGCAGATAGGCGAGGGACGTGATAGTCAGTTTAGAGCTTCCATGGAGTATACTCATGCAGTGTTTGTCCAACGTGTGCCTCAACCTGTCATTCTGCTTGAACTAGAAGCACCTTCCCCACCTATTCAACAAGAAAATCTTGGCGCCCCTGACCCCTGCAATAAGAACTAA

Protein sequence

MTTMLEKVQAENAKLKQIVSQQQEQLGKFTKNKDQLSFTVSNLTSLLITQSDLMWQIGEGRDSQFRASMEYTHAVFVQRVPQPVILLELEAPSPPIQQENLGAPDPCNKN
Homology
BLAST of IVF0001179.2 vs. ExPASy TrEMBL
Match: A0A5D3DYE2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2030G00280 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.2e-24
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = 0

Query: 1   MTTMLEKVQAENAKLKQIVSQQQEQLGKFTKNKDQLSFTVSNLTSLLITQSDLMWQIGEG 60
           MTT++EKVQ EN+KLKQ++++QQ+Q+ K   N+DQLS TVSNLT ++I   ++ W++G  
Sbjct: 222 MTTLMEKVQVENSKLKQLLTEQQKQVAKIMANQDQLSSTVSNLTCVVIMNFEMTWKMGVQ 281

Query: 61  RDSQFRASMEYTHAVFVQRVPQPVILLELEAPSPPIQQENLGAPDPCNKN 111
           RD QF+AS+EYTHAVF QR+P P I  E+E+  P IQ  NLG PDP   N
Sbjct: 282 RDKQFKASIEYTHAVFAQRMPSPFISPEIESLYPLIQPVNLGYPDPHQDN 331

BLAST of IVF0001179.2 vs. ExPASy TrEMBL
Match: A0A5A7VF20 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00430 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.2e-24
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = 0

Query: 1   MTTMLEKVQAENAKLKQIVSQQQEQLGKFTKNKDQLSFTVSNLTSLLITQSDLMWQIGEG 60
           MTT++EKVQ EN+KLKQ++++QQ+Q+ K   N+DQLS TVSNLT ++I   ++ W++G  
Sbjct: 302 MTTLMEKVQVENSKLKQLLTEQQKQVAKIMANQDQLSSTVSNLTCVVIMNFEMTWKMGVQ 361

Query: 61  RDSQFRASMEYTHAVFVQRVPQPVILLELEAPSPPIQQENLGAPDPCNKN 111
           RD QF+AS+EYTHAVF QR+P P I  E+E+  P IQ  NLG PDP   N
Sbjct: 362 RDKQFKASIEYTHAVFAQRMPSPFISPEIESLYPLIQPVNLGYPDPHQDN 411

BLAST of IVF0001179.2 vs. ExPASy TrEMBL
Match: A0A5D3CT45 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G001110 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.9e-08
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 0

Query: 39  TVSNLTSLLITQSDLMWQIGEGRDSQFRASMEYTHAVFVQRVPQPVILLELEAPSPPIQQ 98
           TV+ L +L     ++  ++GE RD +F+ASMEYTHA+FVQRVPQPVI  ELE P PPI Q
Sbjct: 136 TVNQLLAL-----EMQVKMGERRDRKFQASMEYTHAIFVQRVPQPVIPQELETPFPPIHQ 195

Query: 99  ENLGAPDP 107
              G P P
Sbjct: 196 AP-GTPKP 197

BLAST of IVF0001179.2 vs. ExPASy TrEMBL
Match: A0A5A7UH00 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G001880 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.3e-08
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 57  IGEGRDSQFRASMEYTHAVFVQRVPQPVILLELEAPSPPIQQENLGAPDP 107
           +GE RD +F+ASMEYTHA+FVQRVPQPVI  ELE P PPI Q   G P P
Sbjct: 95  MGERRDRKFQASMEYTHAIFVQRVPQPVIPQELETPFPPIHQAP-GTPKP 143

BLAST of IVF0001179.2 vs. ExPASy TrEMBL
Match: A0A5D3CKB6 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001600 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.8e-05
Identity = 30/53 (56.60%), Postives = 34/53 (64.15%), Query Frame = 0

Query: 57  IGEGRDSQFRASMEYTHAVFVQRVPQPVILLELEAPSPPIQQENLGAP--DPC 108
           I +  D QF   MEYTHA+FVQ V QPVI+ EL AP+PPIQ  N      DPC
Sbjct: 444 IAKRHDRQFATQMEYTHALFVQLVAQPVIIPELVAPTPPIQLTNPTPDELDPC 496

BLAST of IVF0001179.2 vs. NCBI nr
Match: TYK28611.1 (hypothetical protein E5676_scaffold2030G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 5.22e-30
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = 0

Query: 1   MTTMLEKVQAENAKLKQIVSQQQEQLGKFTKNKDQLSFTVSNLTSLLITQSDLMWQIGEG 60
           MTT++EKVQ EN+KLKQ++++QQ+Q+ K   N+DQLS TVSNLT ++I   ++ W++G  
Sbjct: 222 MTTLMEKVQVENSKLKQLLTEQQKQVAKIMANQDQLSSTVSNLTCVVIMNFEMTWKMGVQ 281

Query: 61  RDSQFRASMEYTHAVFVQRVPQPVILLELEAPSPPIQQENLGAPDPCNKN 110
           RD QF+AS+EYTHAVF QR+P P I  E+E+  P IQ  NLG PDP   N
Sbjct: 282 RDKQFKASIEYTHAVFAQRMPSPFISPEIESLYPLIQPVNLGYPDPHQDN 331

BLAST of IVF0001179.2 vs. NCBI nr
Match: KAA0064129.1 (uncharacterized protein E6C27_scaffold548G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 1.87e-29
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = 0

Query: 1   MTTMLEKVQAENAKLKQIVSQQQEQLGKFTKNKDQLSFTVSNLTSLLITQSDLMWQIGEG 60
           MTT++EKVQ EN+KLKQ++++QQ+Q+ K   N+DQLS TVSNLT ++I   ++ W++G  
Sbjct: 302 MTTLMEKVQVENSKLKQLLTEQQKQVAKIMANQDQLSSTVSNLTCVVIMNFEMTWKMGVQ 361

Query: 61  RDSQFRASMEYTHAVFVQRVPQPVILLELEAPSPPIQQENLGAPDPCNKN 110
           RD QF+AS+EYTHAVF QR+P P I  E+E+  P IQ  NLG PDP   N
Sbjct: 362 RDKQFKASIEYTHAVFAQRMPSPFISPEIESLYPLIQPVNLGYPDPHQDN 411

BLAST of IVF0001179.2 vs. NCBI nr
Match: TYK14602.1 (hypothetical protein E5676_scaffold552G001110 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 2.78e-11
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 0

Query: 39  TVSNLTSLLITQSDLMWQIGEGRDSQFRASMEYTHAVFVQRVPQPVILLELEAPSPPIQQ 98
           TV+ L +L     ++  ++GE RD +F+ASMEYTHA+FVQRVPQPVI  ELE P PPI Q
Sbjct: 136 TVNQLLAL-----EMQVKMGERRDRKFQASMEYTHAIFVQRVPQPVIPQELETPFPPIHQ 195

Query: 99  ENLGAPDP 106
              G P P
Sbjct: 196 AP-GTPKP 197

BLAST of IVF0001179.2 vs. NCBI nr
Match: KAA0054434.1 (hypothetical protein E6C27_scaffold24G001880 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 3.95e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 57  IGEGRDSQFRASMEYTHAVFVQRVPQPVILLELEAPSPPIQQENLGAPDP 106
           +GE RD +F+ASMEYTHA+FVQRVPQPVI  ELE P PPI Q   G P P
Sbjct: 95  MGERRDRKFQASMEYTHAIFVQRVPQPVIPQELETPFPPIHQAP-GTPKP 143

BLAST of IVF0001179.2 vs. NCBI nr
Match: KAA0041154.1 (hypothetical protein E6C27_scaffold128G00750 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 1.51e-06
Identity = 37/89 (41.57%), Postives = 47/89 (52.81%), Query Frame = 0

Query: 24  EQLGKFTKNKDQLSFTVSNLTSLLITQSDLMWQIGEGRDSQFRASMEYTHAVFVQRVPQP 83
           +Q+         L  TVSNL S++                +F A MEYT+AVFV+R+PQP
Sbjct: 117 DQIASLNTQVQGLEATVSNLNSMV---------------EKFVAQMEYTNAVFVERIPQP 176

Query: 84  VILLELEAPSPPIQ--QENLGAPDPCNKN 110
           VI+ EL AP  PIQ     LG PDP  +N
Sbjct: 177 VIVPELIAPIFPIQLTYPTLGEPDPRPEN 190

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DYE24.2e-2455.45Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VF204.2e-2455.45Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CT451.9e-0855.88Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UH004.3e-0868.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CKB69.8e-0556.60Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
Match NameE-valueIdentityDescription
TYK28611.15.22e-3055.45hypothetical protein E5676_scaffold2030G00280 [Cucumis melo var. makuwa][more]
KAA0064129.11.87e-2955.45uncharacterized protein E6C27_scaffold548G00430 [Cucumis melo var. makuwa][more]
TYK14602.12.78e-1155.88hypothetical protein E5676_scaffold552G001110 [Cucumis melo var. makuwa][more]
KAA0054434.13.95e-1168.00hypothetical protein E6C27_scaffold24G001880 [Cucumis melo var. makuwa][more]
KAA0041154.11.51e-0641.57hypothetical protein E6C27_scaffold128G00750 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 5..25

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0001179IVF0001179gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0001179.2-exonIVF0001179.2-exon-chr05:13554963..13555295exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0001179.2-cdsIVF0001179.2-cds-chr05:13554963..13555295CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0001179.2IVF0001179.2-proteinpolypeptide