IVF0000558.1 (mRNA) Melon (IVF77) v1

Overview
NameIVF0000558.1
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCYSTM domain-containing protein
Locationchr01: 1105040 .. 1105760 (-)
Sequence length267
RNA-Seq ExpressionIVF0000558.1
SyntenyIVF0000558.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGATCCCAAATATGCGTATCCCTACCCACCTCCTCAAGGTATATATGTTGAGCTATGTTATGGTAATTTCGTTGTTACGTTTTGTTTGATTTAGTAATTTGGGGTGGTGTGGATTTGTTTGCAGGAGGATATTATCAAGGGCCACCAGTGATGGCGCCACCTCAGTACGCCGCCCCACCGCCAAAACGACAACCGGGTTTCTTGGAGGGATGGTATGCCAAAAAGCTTCTTCTTTTTGTTCATAAACTCCCTCTTTAATAGTTTTGCTTTTGCTTGCATATATCAAAACTGAAGGTTTAAATTGAGAGTGTTAGGATAATCTAAGGAAAAAACATATCGAAGTGACGAGAACGTCTATCAAGTTTGAACTACATCTTAGGTTTGGATTCCCTGTTCGTTTAGTGTGGCTTAACAGAGGGTTTAATTTTGTGTTTGCAGCCTTGCAGCTCTATGCTGCTGCTGTCTCCTTGATGAATGCTGCTGTGACCCTTCCATTATCTTTCTTACTTGATGCTATGAGAGATTTCTTCATTGCCTTTGTAGCTGTAAATTGCCTGATCTCTTTTCTCTTTTCTTTTCTTCTTTTGTGATTGTGGTTTGATTTTGTGTAAACTTGGGAAAGAACATTGATTGGTGTGTAGAATAAAAGCTTGCTTTGTTGTAAAGTATAGTGTTTATATACTCATTTGATAATAAATTTACTGATCATTACCTAG

mRNA sequence

ATGAGTGATCCCAAATATGCGTATCCCTACCCACCTCCTCAAGGAGGATATTATCAAGGGCCACCAGTGATGGCGCCACCTCAGTACGCCGCCCCACCGCCAAAACGACAACCGGCCTTGCAGCTCTATGCTGCTGCTGTCTCCTTGATGAATGCTGCTGTGACCCTTCCATTATCTTTCTTACTTGATGCTATGAGAGATTTCTTCATTGCCTTTGTAGCTTGTTTATATACTCATTTGATAATAAATTTACTGATCATTACCTAG

Coding sequence (CDS)

ATGAGTGATCCCAAATATGCGTATCCCTACCCACCTCCTCAAGGAGGATATTATCAAGGGCCACCAGTGATGGCGCCACCTCAGTACGCCGCCCCACCGCCAAAACGACAACCGGCCTTGCAGCTCTATGCTGCTGCTGTCTCCTTGATGAATGCTGCTGTGACCCTTCCATTATCTTTCTTACTTGATGCTATGAGAGATTTCTTCATTGCCTTTGTAGCTTGTTTATATACTCATTTGATAATAAATTTACTGATCATTACCTAG

Protein sequence

MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPALQLYAAAVSLMNAAVTLPLSFLLDAMRDFFIAFVACLYTHLIINLLIIT
Homology
BLAST of IVF0000558.1 vs. ExPASy TrEMBL
Match: A0A0A0K7L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G069130 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.2e-29
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPALQLYAAAVSLMNAAVTLPLSF 60
          MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPP+RQPALQLYAAAVSLMNAAVTLPLSF
Sbjct: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQPALQLYAAAVSLMNAAVTLPLSF 60

Query: 61 LLDAMRDFFIAFVACLYTHLIIN 84
          LLDAMR+ FIAFVA  +TH+ IN
Sbjct: 61 LLDAMRE-FIAFVA--HTHVFIN 80

BLAST of IVF0000558.1 vs. ExPASy TrEMBL
Match: A0A5A7SN04 (Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001610 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.6e-27
Identity = 79/113 (69.91%), Postives = 81/113 (71.68%), Query Frame = 0

Query: 1   MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQP---------------------- 60
           MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQP                      
Sbjct: 1   MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWFGFPVRLVWLNRGFNF 60

Query: 61  ---ALQLYAAAVSLMNAAVTLPLSFLLDAMRDFFIAFVA--CLYTHLIINLLI 87
              ALQLYAAAVSLMNAAVTLPLSFLLDAMRDFFIAFVA  CL + L   LL+
Sbjct: 61  VFAALQLYAAAVSLMNAAVTLPLSFLLDAMRDFFIAFVAVNCLISFLFSFLLL 113

BLAST of IVF0000558.1 vs. ExPASy TrEMBL
Match: A0A498IT99 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_002503 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-10
Identity = 44/64 (68.75%), Postives = 48/64 (75.00%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQY-AAPPPKRQPALQLYAAAVSLMNAAVTLPLS 60
          M++PKY YPYPP QG  YQGPPVMAPPQY AAPPPKR+PALQ   A VS M+ A T PL 
Sbjct: 1  MNEPKYGYPYPPAQGP-YQGPPVMAPPQYNAAPPPKREPALQRCVAVVSWMSVAATPPLY 60

Query: 61 FLLD 64
           L D
Sbjct: 61 LLPD 63

BLAST of IVF0000558.1 vs. ExPASy TrEMBL
Match: A0A6J5VLP7 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS49555 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.1e-10
Identity = 46/70 (65.71%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQY--AAPPPKRQPALQLYAAAVSLMNAAVTLPL 60
          MSDPKY Y YPP   G YQGPPVMAPPQY  AAPPPKR+PALQ Y AAVS M+ A T P 
Sbjct: 1  MSDPKYGYAYPPQ--GPYQGPPVMAPPQYYAAAPPPKREPALQHYVAAVSWMSVAATPPF 60

Query: 61 SFLLDAMRDF 69
            L D    F
Sbjct: 61 YLLPDNTMTF 68

BLAST of IVF0000558.1 vs. ExPASy TrEMBL
Match: A0A314Y8T5 (CYSTM domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_05607 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-08
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 0

Query: 1  MSDPKYAYPYPPP-QGGYYQGPPVMAPPQYAAPPPKRQP 39
          MSDPKY YPYP   QGGYYQGPPVMAPPQYAAPPP+R+P
Sbjct: 1  MSDPKYGYPYPAQGQGGYYQGPPVMAPPQYAAPPPRREP 39

BLAST of IVF0000558.1 vs. NCBI nr
Match: KGN43811.1 (hypothetical protein Csa_017361 [Cucumis sativus])

HSP 1 Score: 139 bits (349), Expect = 1.00e-40
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPALQLYAAAVSLMNAAVTLPLSF 60
          MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPP+RQPALQLYAAAVSLMNAAVTLPLSF
Sbjct: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQPALQLYAAAVSLMNAAVTLPLSF 60

Query: 61 LLDAMRDFFIAFVACLYTHLIIN 83
          LLDAMR+F IAFVA  +TH+ IN
Sbjct: 61 LLDAMREF-IAFVA--HTHVFIN 80

BLAST of IVF0000558.1 vs. NCBI nr
Match: KAA0031406.1 (cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa] >TYK06857.1 cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (328), Expect = 3.68e-37
Identity = 77/107 (71.96%), Postives = 78/107 (72.90%), Query Frame = 0

Query: 1   MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQP---------------------- 60
           MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQP                      
Sbjct: 1   MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWFGFPVRLVWLNRGFNF 60

Query: 61  ---ALQLYAAAVSLMNAAVTLPLSFLLDAMRDFFIAFVA--CLYTHL 80
              ALQLYAAAVSLMNAAVTLPLSFLLDAMRDFFIAFVA  CL + L
Sbjct: 61  VFAALQLYAAAVSLMNAAVTLPLSFLLDAMRDFFIAFVAVNCLISFL 107

BLAST of IVF0000558.1 vs. NCBI nr
Match: KAG9440061.1 (hypothetical protein H6P81_020226 [Aristolochia fimbriata])

HSP 1 Score: 89.4 bits (220), Expect = 3.98e-21
Identity = 50/64 (78.12%), Postives = 51/64 (79.69%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPALQLYAAAVSLMNAAVTLPLSF 60
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPP+RQPA  L A AVSLMNAAVT P S 
Sbjct: 1  MSDPKYAYPYP--AQGYYQGPPVMAPPQYAAPPPRRQPASLLSAVAVSLMNAAVTPPSSL 60

Query: 61 LLDA 64
            DA
Sbjct: 61 SADA 62

BLAST of IVF0000558.1 vs. NCBI nr
Match: KAG8497388.1 (hypothetical protein CXB51_008632 [Gossypium anomalum])

HSP 1 Score: 85.9 bits (211), Expect = 5.94e-20
Identity = 46/63 (73.02%), Postives = 48/63 (76.19%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPALQLYAAAVSLMNAAVTLPLSF 60
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPP+R+P LQLY A V LMN AV  P S 
Sbjct: 1  MSDPKYAYPYP--AQGYYQGPPVMAPPQYAAPPPRREPVLQLYVAVVLLMNVAVIHPSSL 60

Query: 61 LLD 63
            D
Sbjct: 61 SAD 61

BLAST of IVF0000558.1 vs. NCBI nr
Match: KAG6571885.1 (hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011569.1 hypothetical protein SDJN02_26475 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 81.3 bits (199), Expect = 4.43e-18
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQP 38
          MSDPKYAYPYPPP GGYYQGPPVMAPPQYAAPPPKRQP
Sbjct: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPKRQP 38

BLAST of IVF0000558.1 vs. TAIR 10
Match: AT4G33660.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 2.0e-05
Identity = 27/40 (67.50%), Postives = 27/40 (67.50%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQGGYYQG--PPVMAPPQYAAPPPKRQP 39
          MSDPKYAYPYP P G Y QG  PPV  PPQY  PPP   P
Sbjct: 1  MSDPKYAYPYPAP-GNYPQGPPPPVGVPPQYYPPPPPPPP 39

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K7L81.2e-2990.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G069130 PE=4 SV=1[more]
A0A5A7SN045.6e-2769.91Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo... [more]
A0A498IT991.6e-1068.75Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_002503 PE=4 SV=1[more]
A0A6J5VLP72.1e-1065.71Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS49555 PE=4 S... [more]
A0A314Y8T52.0e-0884.62CYSTM domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN... [more]
Match NameE-valueIdentityDescription
KGN43811.11.00e-4090.36hypothetical protein Csa_017361 [Cucumis sativus][more]
KAA0031406.13.68e-3771.96cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo v... [more]
KAG9440061.13.98e-2178.13hypothetical protein H6P81_020226 [Aristolochia fimbriata][more]
KAG8497388.15.94e-2073.02hypothetical protein CXB51_008632 [Gossypium anomalum][more]
KAG6571885.14.43e-1897.37hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
AT4G33660.12.0e-0567.50unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0000558IVF0000558gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0000558.1-exonIVF0000558.1-exon-chr01:1105040..1105084exon
IVF0000558.1-exonIVF0000558.1-exon-chr01:1105211..1105317exon
IVF0000558.1-exonIVF0000558.1-exon-chr01:1105560..1105631exon
IVF0000558.1-exonIVF0000558.1-exon-chr01:1105718..1105760exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0000558.1-cdsIVF0000558.1-cds-chr01:1105040..1105084CDS
IVF0000558.1-cdsIVF0000558.1-cds-chr01:1105211..1105317CDS
IVF0000558.1-cdsIVF0000558.1-cds-chr01:1105560..1105631CDS
IVF0000558.1-cdsIVF0000558.1-cds-chr01:1105718..1105760CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0000558.1IVF0000558.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane