IVF0000558.1 (mRNA) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGTGATCCCAAATATGCGTATCCCTACCCACCTCCTCAAGGTATATATGTTGAGCTATGTTATGGTAATTTCGTTGTTACGTTTTGTTTGATTTAGTAATTTGGGGTGGTGTGGATTTGTTTGCAGGAGGATATTATCAAGGGCCACCAGTGATGGCGCCACCTCAGTACGCCGCCCCACCGCCAAAACGACAACCGGGTTTCTTGGAGGGATGGTATGCCAAAAAGCTTCTTCTTTTTGTTCATAAACTCCCTCTTTAATAGTTTTGCTTTTGCTTGCATATATCAAAACTGAAGGTTTAAATTGAGAGTGTTAGGATAATCTAAGGAAAAAACATATCGAAGTGACGAGAACGTCTATCAAGTTTGAACTACATCTTAGGTTTGGATTCCCTGTTCGTTTAGTGTGGCTTAACAGAGGGTTTAATTTTGTGTTTGCAGCCTTGCAGCTCTATGCTGCTGCTGTCTCCTTGATGAATGCTGCTGTGACCCTTCCATTATCTTTCTTACTTGATGCTATGAGAGATTTCTTCATTGCCTTTGTAGCTGTAAATTGCCTGATCTCTTTTCTCTTTTCTTTTCTTCTTTTGTGATTGTGGTTTGATTTTGTGTAAACTTGGGAAAGAACATTGATTGGTGTGTAGAATAAAAGCTTGCTTTGTTGTAAAGTATAGTGTTTATATACTCATTTGATAATAAATTTACTGATCATTACCTAG ATGAGTGATCCCAAATATGCGTATCCCTACCCACCTCCTCAAGGAGGATATTATCAAGGGCCACCAGTGATGGCGCCACCTCAGTACGCCGCCCCACCGCCAAAACGACAACCGGCCTTGCAGCTCTATGCTGCTGCTGTCTCCTTGATGAATGCTGCTGTGACCCTTCCATTATCTTTCTTACTTGATGCTATGAGAGATTTCTTCATTGCCTTTGTAGCTTGTTTATATACTCATTTGATAATAAATTTACTGATCATTACCTAG ATGAGTGATCCCAAATATGCGTATCCCTACCCACCTCCTCAAGGAGGATATTATCAAGGGCCACCAGTGATGGCGCCACCTCAGTACGCCGCCCCACCGCCAAAACGACAACCGGCCTTGCAGCTCTATGCTGCTGCTGTCTCCTTGATGAATGCTGCTGTGACCCTTCCATTATCTTTCTTACTTGATGCTATGAGAGATTTCTTCATTGCCTTTGTAGCTTGTTTATATACTCATTTGATAATAAATTTACTGATCATTACCTAG MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPALQLYAAAVSLMNAAVTLPLSFLLDAMRDFFIAFVACLYTHLIINLLIIT Homology
BLAST of IVF0000558.1 vs. ExPASy TrEMBL
Match: A0A0A0K7L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G069130 PE=4 SV=1) HSP 1 Score: 138.7 bits (348), Expect = 1.2e-29 Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 0
BLAST of IVF0000558.1 vs. ExPASy TrEMBL
Match: A0A5A7SN04 (Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001610 PE=4 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 5.6e-27 Identity = 79/113 (69.91%), Postives = 81/113 (71.68%), Query Frame = 0
BLAST of IVF0000558.1 vs. ExPASy TrEMBL
Match: A0A498IT99 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_002503 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.6e-10 Identity = 44/64 (68.75%), Postives = 48/64 (75.00%), Query Frame = 0
BLAST of IVF0000558.1 vs. ExPASy TrEMBL
Match: A0A6J5VLP7 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS49555 PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 2.1e-10 Identity = 46/70 (65.71%), Postives = 48/70 (68.57%), Query Frame = 0
BLAST of IVF0000558.1 vs. ExPASy TrEMBL
Match: A0A314Y8T5 (CYSTM domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_05607 PE=3 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 2.0e-08 Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 0
BLAST of IVF0000558.1 vs. NCBI nr
Match: KGN43811.1 (hypothetical protein Csa_017361 [Cucumis sativus]) HSP 1 Score: 139 bits (349), Expect = 1.00e-40 Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 0
BLAST of IVF0000558.1 vs. NCBI nr
Match: KAA0031406.1 (cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa] >TYK06857.1 cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa]) HSP 1 Score: 130 bits (328), Expect = 3.68e-37 Identity = 77/107 (71.96%), Postives = 78/107 (72.90%), Query Frame = 0
BLAST of IVF0000558.1 vs. NCBI nr
Match: KAG9440061.1 (hypothetical protein H6P81_020226 [Aristolochia fimbriata]) HSP 1 Score: 89.4 bits (220), Expect = 3.98e-21 Identity = 50/64 (78.12%), Postives = 51/64 (79.69%), Query Frame = 0
BLAST of IVF0000558.1 vs. NCBI nr
Match: KAG8497388.1 (hypothetical protein CXB51_008632 [Gossypium anomalum]) HSP 1 Score: 85.9 bits (211), Expect = 5.94e-20 Identity = 46/63 (73.02%), Postives = 48/63 (76.19%), Query Frame = 0
BLAST of IVF0000558.1 vs. NCBI nr
Match: KAG6571885.1 (hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011569.1 hypothetical protein SDJN02_26475 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 81.3 bits (199), Expect = 4.43e-18 Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 0
BLAST of IVF0000558.1 vs. TAIR 10
Match: AT4G33660.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 45.8 bits (107), Expect = 2.0e-05 Identity = 27/40 (67.50%), Postives = 27/40 (67.50%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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