IVF0000098.2 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0000098.2
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	VQ domain-containing protein
Location	chr05: 24834303 .. 24834738 (+)
Sequence length	436
RNA-Seq Expression	IVF0000098.2
Synteny	IVF0000098.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCTCTCTCTAACTCTCTCTAATGGGGAAGTGTGGAGAGAATCAATACACCAACCAAAGCCAAAGCCAAAGCCAAAACCAAAACCCTACAAAAGTTCAAAGAAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAGTGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACCGGCTTCGATTCCAACAGTACTCCTACTCGCCGGAGGAACCAGAAATCGGTTTCCGACTGCGCCCGAACTCCATCTTCAATGTTTCATGCAGATCGTGAAATGGAAGTTTTGAAGTTCTCAGATGATCACATGGCGTCGCTCCTCCAATTTGATGATCAAGGTTGTTTTGACACACAAAATAATAATAATAATATTCTTCCCAACAACATTATGGAATTTCAATCTTCTTGTTTTTTCCAATAG

mRNA sequence

AATCTCTCTCTAACTCTCTCTAATGGGGAAGTGTGGAGAGAATCAATACACCAACCAAAGCCAAAGCCAAAGCCAAAACCAAAACCCTACAAAAGTTCAAAGAAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAGTGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACCGGCTTCGATTCCAACAGTACTCCTACTCGCCGGAGGAACCAGAAATCGGTTTCCGACTGCGCCCGAACTCCATCTTCAATGTTTCATGCAGATCGTGAAATGGAAGTTTTGAAGTTCTCAGATGATCACATGGCGTCGCTCCTCCAATTTGATGATCAAGGTTGTTTTGACACACAAAATAATAATAATAATATTCTTCCCAACAACATTATGGAATTTCAATCTTCTTGTTTTTTCCAATAG

Coding sequence (CDS)

ATGGGGAAGTGTGGAGAGAATCAATACACCAACCAAAGCCAAAGCCAAAGCCAAAACCAAAACCCTACAAAAGTTCAAAGAAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAGTGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACCGGCTTCGATTCCAACAGTACTCCTACTCGCCGGAGGAACCAGAAATCGGTTTCCGACTGCGCCCGAACTCCATCTTCAATGTTTCATGCAGATCGTGAAATGGAAGTTTTGAAGTTCTCAGATGATCACATGGCGTCGCTCCTCCAATTTGATGATCAAGGTTGTTTTGACACACAAAATAATAATAATAATATTCTTCCCAACAACATTATGGAATTTCAATCTTCTTGTTTTTTCCAATAG

Protein sequence

MGKCGENQYTNQSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPSSMFHADREMEVLKFSDDHMASLLQFDDQGCFDTQNNNNNILPNNIMEFQSSCFFQ

Homology

[Close]

BLAST of IVF0000098.2 vs. ExPASy TrEMBL
Match: A0A0A0LIA7 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.6e-57
Identity = 127/141 (90.07%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 1   MGKCGENQYT--NQSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASSALEFRAIVQQLTG 60
           MGKCGENQYT  N SQSQSQNQNPTKVQRKPIKVKYISSPMMIKAS+ALEFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  FDSNSTPTRRRNQKSVSDCARTPSSMFHADR-EMEVLKFSDD-HMASLLQFDDQGCFDTQ 120
           FDSN TPTRRRNQK +SDCARTPS+MFHADR EMEVLKFSDD HM SLLQFD QGCF+TQ
Sbjct: 61  FDSN-TPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQ 120

Query: 121 NNNNNILPNNIMEFQSSCFFQ 138
            NNNNILPNNIMEFQSSCFFQ
Sbjct: 121 -NNNNILPNNIMEFQSSCFFQ 139

[Close]

BLAST of IVF0000098.2 vs. ExPASy TrEMBL
Match: A0A5A7V7M1 (VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G00880 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.0e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 39  MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPSSMFHADREMEVLKFSD 98
           MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPSSMFHADREMEVLKFSD
Sbjct: 1   MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPSSMFHADREMEVLKFSD 60

Query: 99  DHMASLLQFDDQGC 113
           DHMASLLQFDDQGC
Sbjct: 61  DHMASLLQFDDQGC 74

[Close]

BLAST of IVF0000098.2 vs. ExPASy TrEMBL
Match: A0A6J1A533 (uncharacterized protein LOC110414990 OS=Herrania umbratica OX=108875 GN=LOC110414990 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.9e-08
Identity = 50/130 (38.46%), Postives = 73/130 (56.15%), Query Frame = 0


Query: 18  QNQNPTKVQRKPIKVKYISSPMMIKASSALEFRAIVQQLTGFDS-----NSTPTRRRNQK 77
           +++NPTK ++ PIK+KYISSPMM+KAS+A EFRAIVQ+LTG +S     ++ PT      
Sbjct: 30  KSKNPTKAKKNPIKIKYISSPMMVKASNADEFRAIVQELTGRNSDVGEPSNVPT------ 89

Query: 78  SVSDCARTPSSMFHADR------EMEVLKFSDDHMASLLQFDDQGCFDTQNNNNNILPNN 137
           ++ + A    S FH D       +  +L    D M+S L+FD+   +         +P N
Sbjct: 90  TLPEEANQVHSPFHVDSPPAKVDDKSLLDTFQDDMSS-LEFDEGFLW-------RAVPEN 145

[Close]

BLAST of IVF0000098.2 vs. ExPASy TrEMBL
Match: W9RT96 (VQ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_024544 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.9e-08
Identity = 58/160 (36.25%), Postives = 79/160 (49.38%), Query Frame = 0


Query: 5   GENQYTNQSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASSALEFRAIVQQLTGFDSNST 64
           G +QY N    +SQ Q P+K ++KPIK+KYISSPMM++A++A EFRAIVQ+LTG +SN T
Sbjct: 8   GNSQYQNNPHLRSQKQ-PSKGKKKPIKIKYISSPMMVRANNASEFRAIVQELTGRNSNYT 67

Query: 65  P-----------TRRRNQKSVSDCARTPSSMFHADREMEVL-----------------KF 124
                        R     S SD  +   S F AD   +                   KF
Sbjct: 68  DLYDDVHHDESLNRTTTIFSESDHDQPGWSQFSADYHPQGSDDHALVDDRDHDHHVGGKF 127

Query: 125 SDDHMASLLQFDDQGCFDTQNNNNNILPNNIMEFQSSCFF 137
           S+ +++ L Q D+ G F         +  +   FQSSC F
Sbjct: 128 SNPNVSLLGQIDELGLFWRSE-----VSESFNGFQSSCLF 161

[Close]

BLAST of IVF0000098.2 vs. ExPASy TrEMBL
Match: A0A2P6R5P1 (VQ domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0450331 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 43/98 (43.88%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 14  QSQSQNQNPTKVQRKPIKVKYISSPMMIKASSALEFRAIVQQLTGFDSNST-PTRRRNQK 73
           Q +++ Q  +K +  PI +KYISSPMM++A++A EFRAIVQ+LTG +S++T P    NQ 
Sbjct: 11  QQRAERQKRSKAE-TPIMIKYISSPMMVQANNASEFRAIVQELTGQNSDTTIPDHGTNQA 70

Query: 74  S-VSDCARTPSSMFHADREMEVLKFSDDHMASLLQFDD 110
           S VS+   + S+        E++KFSDD +    QFD+
Sbjct: 71  SWVSNHRASQSANMKTQNADELMKFSDDRVEVFSQFDE 107

[Close]

BLAST of IVF0000098.2 vs. NCBI nr
Match: KGN60779.1 (hypothetical protein Csa_019238 [Cucumis sativus])

HSP 1 Score: 231 bits (589), Expect = 1.03e-75
Identity = 127/141 (90.07%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 1   MGKCGENQYTNQ--SQSQSQNQNPTKVQRKPIKVKYISSPMMIKASSALEFRAIVQQLTG 60
           MGKCGENQYTN   SQSQSQNQNPTKVQRKPIKVKYISSPMMIKAS+ALEFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  FDSNSTPTRRRNQKSVSDCARTPSSMFHADR-EMEVLKFSDDH-MASLLQFDDQGCFDTQ 120
           FDSN TPTRRRNQK +SDCARTPS+MFHADR EMEVLKFSDDH M SLLQFD QGCF+TQ
Sbjct: 61  FDSN-TPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQ 120

Query: 121 NNNNNILPNNIMEFQSSCFFQ 137
           NNNN ILPNNIMEFQSSCFFQ
Sbjct: 121 NNNN-ILPNNIMEFQSSCFFQ 139

[Close]

BLAST of IVF0000098.2 vs. NCBI nr
Match: KAG6599333.1 (hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 153 bits (386), Expect = 6.18e-45
Identity = 90/138 (65.22%), Postives = 105/138 (76.09%), Query Frame = 0


Query: 1   MGKCGENQYTNQSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASSALEFRAIVQQLTGFD 60
           MGKCGEN++ +Q QSQ    NPTKVQRKPIKVKYISSPMMIKAS+A EFRAIVQQLTGF 
Sbjct: 1   MGKCGENEWKDQKQSQ----NPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFT 60

Query: 61  SNSTPTRRRNQKSVSDCARTPS-SMFHADREMEVLKFSDDHMASLLQFDDQGCFDTQNNN 120
           S+S PTRR N K     A+TPS S  HA+ +ME LK SD +M+SLL+FDD+ CF T +N 
Sbjct: 61  SHS-PTRRSNHKPPPHAAQTPSTSTLHANPQMEALKLSD-NMSSLLEFDDEACFVTLDN- 120

Query: 121 NNILPNNIMEFQSSCFFQ 137
             +L NN M FQ+SC FQ
Sbjct: 121 --VLTNNFMGFQASCLFQ 129

[Close]

BLAST of IVF0000098.2 vs. NCBI nr
Match: KAA0063578.1 (hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (375), Expect = 6.16e-44
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 39  MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPSSMFHADREMEVLKFSD 98
           MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPSSMFHADREMEVLKFSD
Sbjct: 1   MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPSSMFHADREMEVLKFSD 60

Query: 99  DHMASLLQFDDQGC 112
           DHMASLLQFDDQGC
Sbjct: 61  DHMASLLQFDDQGC 74

[Close]

BLAST of IVF0000098.2 vs. NCBI nr
Match: PRQ41767.1 (hypothetical protein RchiOBHm_Chr3g0450331 [Rosa chinensis])

HSP 1 Score: 68.2 bits (165), Expect = 1.54e-11
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 29  PIKVKYISSPMMIKASSALEFRAIVQQLTGFDSNST-PTRRRNQKS-VSDCARTPSSMFH 88
           PI +KYISSPMM++A++A EFRAIVQ+LTG +S++T P    NQ S VS+   + S+   
Sbjct: 25  PIMIKYISSPMMVQANNASEFRAIVQELTGQNSDTTIPDHGTNQASWVSNHRASQSANMK 84

Query: 89  ADREMEVLKFSDDHMASLLQFDD 109
                E++KFSDD +    QFD+
Sbjct: 85  TQNADELMKFSDDRVEVFSQFDE 107

[Close]

BLAST of IVF0000098.2 vs. NCBI nr
Match: XP_010102262.1 (sigma factor binding protein 1, chloroplastic [Morus notabilis] >EXB93205.1 hypothetical protein L484_024544 [Morus notabilis])

HSP 1 Score: 68.2 bits (165), Expect = 3.43e-11
Identity = 58/160 (36.25%), Postives = 79/160 (49.38%), Query Frame = 0


Query: 5   GENQYTNQSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASSALEFRAIVQQLTGFDSNST 64
           G +QY N    +SQ Q P+K ++KPIK+KYISSPMM++A++A EFRAIVQ+LTG +SN T
Sbjct: 8   GNSQYQNNPHLRSQKQ-PSKGKKKPIKIKYISSPMMVRANNASEFRAIVQELTGRNSNYT 67

Query: 65  P-----------TRRRNQKSVSDCARTPSSMFHADREMEVL-----------------KF 124
                        R     S SD  +   S F AD   +                   KF
Sbjct: 68  DLYDDVHHDESLNRTTTIFSESDHDQPGWSQFSADYHPQGSDDHALVDDRDHDHHVGGKF 127

Query: 125 SDDHMASLLQFDDQGCFDTQNNNNNILPNNIMEFQSSCFF 136
           S+ +++ L Q D+ G F         +  +   FQSSC F
Sbjct: 128 SNPNVSLLGQIDELGLFWRSE-----VSESFNGFQSSCLF 161

The following BLAST results are available for this feature:

BLAST of IVF0000098.2 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0000098.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIA7	3.6e-57	90.07	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=...	[more]
A0A5A7V7M1	4.0e-32	100.00	VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A6J1A533	6.9e-08	38.46	uncharacterized protein LOC110414990 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]
W9RT96	6.9e-08	36.25	VQ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_024544 PE=4 SV...	[more]
A0A2P6R5P1	1.2e-07	43.88	VQ domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0450331...	[more]

BLAST of IVF0000098.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60779.1	1.03e-75	90.07	hypothetical protein Csa_019238 [Cucumis sativus]	[more]
KAG6599333.1	6.18e-45	65.22	hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0063578.1	6.16e-44	100.00	hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa]	[more]
PRQ41767.1	1.54e-11	48.19	hypothetical protein RchiOBHm_Chr3g0450331 [Rosa chinensis]	[more]
XP_010102262.1	3.43e-11	36.25	sigma factor binding protein 1, chloroplastic [Morus notabilis] >EXB93205.1 hypo...	[more]

BLAST of IVF0000098.2 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 35..63 e-value: 4.2E-9 score: 35.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR33624:SF17	VQ MOTIF PROTEIN	coord: 9..134
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 9..134

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0000098	IVF0000098	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0000098.2-five_prime_utr	IVF0000098.2-five_prime_utr-chr05:24834303..24834324	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0000098.2-exon	IVF0000098.2-exon-chr05:24834303..24834738	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0000098.2-cds	IVF0000098.2-cds-chr05:24834325..24834738	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0000098.2	IVF0000098.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity