HG10023504.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10023504.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein kinase domain-containing protein
Location	Chr05: 34778266 .. 34778547 (-)
Sequence length	186
RNA-Seq Expression	HG10023504.1
Synteny	HG10023504.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCTCAAGGTGATTTTAAAAATATAGCAGACCAAAGATTAAAAGGAGAATATAACATAAACTCTGTCCGAAAAGTAGTGGAAGTAGCAATGTTTTGAGTATCAGGGAATTCTGAGAGAAGACCAACAACGAATCAAGTAGTGGCAGGATTGAAAAGTTGCTTGGCTATAGAATTGAGTAGAACGTCGGACGGTCGGCCTTCTGATTCAACAGAGTCCATTGAGATGGCATCCATCTACATGGCTTTGCCTCCTCAATCAAGTCTCATGGCGAGGTGA

mRNA sequence

ATGGTTGCTCAAGGGAATTCTGAGAGAAGACCAACAACGAATCAAGTAGTGGCAGGATTGAAAAGTTGCTTGGCTATAGAATTGAGTAGAACGTCGGACGGTCGGCCTTCTGATTCAACAGAGTCCATTGAGATGGCATCCATCTACATGGCTTTGCCTCCTCAATCAAGTCTCATGGCGAGGTGA

Coding sequence (CDS)

ATGGTTGCTCAAGGGAATTCTGAGAGAAGACCAACAACGAATCAAGTAGTGGCAGGATTGAAAAGTTGCTTGGCTATAGAATTGAGTAGAACGTCGGACGGTCGGCCTTCTGATTCAACAGAGTCCATTGAGATGGCATCCATCTACATGGCTTTGCCTCCTCAATCAAGTCTCATGGCGAGGTGA

Protein sequence

MVAQGNSERRPTTNQVVAGLKSCLAIELSRTSDGRPSDSTESIEMASIYMALPPQSSLMAR

Homology

[Close]

BLAST of HG10023504.1 vs. NCBI nr
Match: XP_008462392.1 (PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210 isoform X1 [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 3.9e-13
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 6   NSERRPTTNQVVAGLKSCLAIELSRTSDGRPSDSTESIEMASIYMALPPQSSLMAR 62
           NSERRPT NQV+A LKSCLA ELSRT D  PS+STES+EM SIYM LPPQS  MAR
Sbjct: 832 NSERRPTINQVLAELKSCLATELSRTPDSHPSNSTESVEMTSIYMVLPPQSGPMAR 887

[Close]

BLAST of HG10023504.1 vs. NCBI nr
Match: KAA0059456.1 (putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa] >TYK03868.1 putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 6   NSERRPTTNQVVAGLKSCLAIELSRTSDGRPSDSTESIEMASIYMALPPQSSLMAR 62
           NSERRPT NQV+A LKSCLA ELSRT D +P +STES+EM SIYM LPPQS  MAR
Sbjct: 829 NSERRPTINQVLAELKSCLATELSRTPDSQPPNSTESVEMTSIYMVLPPQSGPMAR 884

[Close]

BLAST of HG10023504.1 vs. NCBI nr
Match: KAE8646520.1 (hypothetical protein Csa_015779 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 6   NSERRPTTNQVVAGLKSCLAIELSRTSDGRPSDSTESIEMASIYMALPPQSSLMAR 62
           NSERRPT NQV+A LKSCLA EL+RT D +P +STESIEM SIYM LPPQS  MAR
Sbjct: 339 NSERRPTINQVLAELKSCLATELTRTPDSQPPNSTESIEMTSIYMVLPPQSGPMAR 394

[Close]

BLAST of HG10023504.1 vs. NCBI nr
Match: XP_038898023.1 (probable LRR receptor-like serine/threonine-protein kinase At1g51880 [Benincasa hispida])

HSP 1 Score: 79.7 bits (195), Expect = 9.5e-12
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 6   NSERRPTTNQVVAGLKSCLAIELSRTSDGRPSDSTESIEMASIYMALPPQSSLMAR 62
           NSERRPT +QV+A LK CLA ELSRTSD +P +S+ESIEM SIYM LPPQS  MAR
Sbjct: 832 NSERRPTISQVLAELKGCLATELSRTSDSQPLNSSESIEMTSIYMVLPPQSGPMAR 887

[Close]

BLAST of HG10023504.1 vs. NCBI nr
Match: XP_038897470.1 (putative leucine-rich repeat receptor-like protein kinase At2g19210 [Benincasa hispida])

HSP 1 Score: 79.7 bits (195), Expect = 9.5e-12
Identity = 44/57 (77.19%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 5   GNSERRPTTNQVVAGLKSCLAIELSRTSDGRPSDSTESIEMASIYMALPPQSSLMAR 62
           GNSERRPT NQVVA LKSCLAIELSR  + +P  STESIEM SI MALP QSS MAR
Sbjct: 895 GNSERRPTMNQVVAELKSCLAIELSRRPNSQPPYSTESIEMTSIVMALPSQSSPMAR 951

[Close]

BLAST of HG10023504.1 vs. ExPASy TrEMBL
Match: A0A1S3CHD6 (putative leucine-rich repeat receptor-like protein kinase At2g19210 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500762 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.9e-13
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 6   NSERRPTTNQVVAGLKSCLAIELSRTSDGRPSDSTESIEMASIYMALPPQSSLMAR 62
           NSERRPT NQV+A LKSCLA ELSRT D  PS+STES+EM SIYM LPPQS  MAR
Sbjct: 832 NSERRPTINQVLAELKSCLATELSRTPDSHPSNSTESVEMTSIYMVLPPQSGPMAR 887

[Close]

BLAST of HG10023504.1 vs. ExPASy TrEMBL
Match: A0A5D3BXZ0 (Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00620 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.4e-13
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 6   NSERRPTTNQVVAGLKSCLAIELSRTSDGRPSDSTESIEMASIYMALPPQSSLMAR 62
           NSERRPT NQV+A LKSCLA ELSRT D +P +STES+EM SIYM LPPQS  MAR
Sbjct: 829 NSERRPTINQVLAELKSCLATELSRTPDSQPPNSTESVEMTSIYMVLPPQSGPMAR 884

[Close]

BLAST of HG10023504.1 vs. ExPASy TrEMBL
Match: A0A0A0K786 (Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G452100 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.3e-13
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 6   NSERRPTTNQVVAGLKSCLAIELSRTSDGRPSDSTESIEMASIYMALPPQSSLMAR 62
           NSERRPT NQV+A LKSCLA EL+RT D +P +STESIEM SIYM LPPQS  MAR
Sbjct: 694 NSERRPTINQVLAELKSCLATELTRTPDSQPPNSTESIEMTSIYMVLPPQSGPMAR 749

[Close]

BLAST of HG10023504.1 vs. ExPASy TrEMBL
Match: A0A0A0KB09 (Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G452120 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 40/59 (67.80%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 3   AQGNSERRPTTNQVVAGLKSCLAIELSRTSDGRPSDSTESIEMASIYMALPPQSSLMAR 62
           A  NSERRPT NQVVA LKSCLAIELSRT + +   S ES EM S+YM LPPQ+  MAR
Sbjct: 860 ASVNSERRPTMNQVVAELKSCLAIELSRTPENQAPHSIESTEMTSMYMVLPPQTGPMAR 918

[Close]

BLAST of HG10023504.1 vs. ExPASy TrEMBL
Match: A0A5D3BWJ3 (Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00610 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 38/56 (67.86%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 6   NSERRPTTNQVVAGLKSCLAIELSRTSDGRPSDSTESIEMASIYMALPPQSSLMAR 62
           NS RRPT N+VVA LKSCLAIELSRT + +   S ES EM SIYM LPPQ+  MAR
Sbjct: 811 NSVRRPTMNKVVAELKSCLAIELSRTPENQAPHSIESTEMTSIYMVLPPQTGPMAR 866

The following BLAST results are available for this feature:

BLAST of HG10023504.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462392.1	3.9e-13	76.79	PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210 i...	[more]
KAA0059456.1	1.1e-12	75.00	putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. mak...	[more]
KAE8646520.1	1.9e-12	75.00	hypothetical protein Csa_015779 [Cucumis sativus]	[more]
XP_038898023.1	9.5e-12	73.21	probable LRR receptor-like serine/threonine-protein kinase At1g51880 [Benincasa ...	[more]
XP_038897470.1	9.5e-12	77.19	putative leucine-rich repeat receptor-like protein kinase At2g19210 [Benincasa h...	[more]

BLAST of HG10023504.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10023504.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CHD6	1.9e-13	76.79	putative leucine-rich repeat receptor-like protein kinase At2g19210 isoform X1 O...	[more]
A0A5D3BXZ0	5.4e-13	75.00	Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. m...	[more]
A0A0A0K786	9.3e-13	75.00	Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G452...	[more]
A0A0A0KB09	1.5e-10	67.80	Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G452...	[more]
A0A5D3BWJ3	1.6e-09	67.86	Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. m...	[more]

BLAST of HG10023504.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10023504	HG10023504	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10023504.1-cds	HG10023504.1-cds-Chr05:34778266..34778438	CDS
HG10023504.1-cds	HG10023504.1-cds-Chr05:34778535..34778547	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10023504.1	HG10023504.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity