HG10023393.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10023393.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RNA-binding protein with multiple splicing 2
Location	Chr05: 33726192 .. 33729421 (-)
Sequence length	915
RNA-Seq Expression	HG10023393.1
Synteny	HG10023393.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGTACTGGAATCCACCCGTACCACCAGCAATGGCCTGCTGCCGCCGCCGCTCCTCCTCCTCCTCCGCCACAAGCCACCGCCGCTGCTCCTCCTCCCATTCCCCACCCCCATCCTCCTCAGATCCTTGTCGACAACCCCGGCCGCCATGCCTCTGATGAGGTACTCTCTCTTTTCCCTATTTGTCGTAGTACTGAAGTTAGGATCTCAGGCAGTTCAAGGTTCAACTAGAGGTTTTACCTAGTTTCCGAGCTTAATTTGGTTTGTCTTGTGTTTTCTAGTCAGTTCGGCTGATTATTTTGCTCAATCAATCGTCTTTGGAAATATTTGATGGTTTCTTAATGCTCTTTAAGGCTCTTTTTGACTTTTTGTTGTATTAGGTTCGAACTATATTTATAACTGGTCTTCCTGAAGATGTAAAAGAGAGAGAGCTACAGAATCTTCTCAGATGGTTACCTGGTTACGAGGCTTCACAAGTAAATTTCAAAGGTGAAAAGCCTATGGGCTTTGCTCTATTCTCCAATGCCCAGTTTGCTATTGCTGCGAAAGATGCCCTTCAGGTTCAAGTCTTTGCCTCGCTGTTCTCTTTAATGAGTTATTGAATTCTCAATCTTGAAGTGTCGGTTGCTTTGATCTGTGGTTCAGGATATGGTTTTTGATGCGGAGTCTAAGTCAGTGTTGCACACGGAGATGGCCAAGAAAAATCTATTTGTTAAACGAGGTGATTTAGTAACTTTTATGATTCTTGTTGGGTCTCATTAAGTTTATTTGGAGCTTTGATTGAGGGTCATCACGCATGACGTTTGTTTTAGATTTTGATTTAATCGCATTTACCTTCCTTTTGATATTGACTTGTAATGCTACATGCTTCTGCAATTCAAGTTGCCTTAGGCACTATATATCTAGTTATGCAACAGTTTCGTTTCCTTTTCTATCAACGATGGGAGATTAATAAAAGATCTCCCAACACCATCTTCTGCTTATTCACTTAGAGGCTTTCTTGTGATGTCCTCTTATAACGCACACATCAATAGACCTTCAGTTTTTTCTTTTGTTGTGTAACGGTTTCAAGCTTTAAACACTTAGTTGCTCTTTTCTCATTTCGAAATAGAAAGAAGCAAAAAATTGATCCTGCTCGATTTGCTAATCTCTGTTCTTCTTGTAGGCATTGTTGCTGATGCAAGTGCTTATGACCAAAGTAAACGTTTGAGAACTGGTGGTGACTGTGCCCACACCGGATATTCAAGCCCATCACCTTTTCATGCACCTCCACCCCCTATTTGGGGGCCTCATGGGTGAGTCTTCTCTATCTGAAATTCGGAAAGTGCTTTCTCTTCAAAGTTAGTGTATGTCTAATCACCTGTGAGATGTTGGATGGTTATAGAGAAGGAGTAGGATTTGTTAATAGCTCAATTTGCTCACGTTCTTAGACATTTTATGGTTGTTTTGTGTGTCCCCAACCCCACACCAAATGGCATTGGATTTTGTTGGTCAAGTTCCTTATGGTTCTGTGGTTATCTAGGTATATGGCTCCACCTCCTCCTCCATACGATCCGTATGGAGGTTACGCTGTTCCTCCTGTACCTATGCCTGCTCCTGCACCTGTACCAGCACCTAGCAGCTATGTGCCTGTTCAGGTAATTCTACACGTCTATGGCACATAACTATGATTCTTCTGACAGTTTCACTTTTTTTGTGGTGTGTCTCTCCTGCCATGCTTTCTTCTTTTTTCATCAGCATTTGACCGCGGTCCATATTGTTTCATTAGCATGTTGTTGCTCTATTTCTCTGTTTGACATTGAACTTTGACATTACCCTCTTGTGACTACTATCCCTGGAATAGGAGGCTTTATCTACAGCTAACTATTAAGGTTACGATGAAGACATCATGACATGAAGTGCATTGTCTTATCCTTTCCGCTGGGAAAAGAAAAAGTTTATGTTGCATGGGTTTTTTGTGCAAGGATTGGAATTTTTCTTCATCTCATTTTTCTCGTGTTTCCTACAGAACACTAAAGATAATCCTCCTTGCAATACCCTGTTTATTGGCAATCTGGGGGAAAATGTAAATGAAGAGGAACTCAGAGGTCTTTTTAGCGTGTATGCGAGTCTCATCTTTGCACAATTTTCAATTGTTATATCATGTCTATAAATTGCCCTAAACCAACTGAATCTTTTGGATCACTGGTTCATGACATATAACGCAGACAGCCTGGATTTAAGCAAATGAAGATTCTGAGGCAGGAAAGGCACACGGTGTGCTTCATTGAGTTTGAAGTAAGTAGGTTTTAGTTGACTCATGTAGTCATGTAGTCATGTTCAGGTTATTGATTATTAACATGTGTTTTCTTTCATGCCTTCTAATTTGGTTATCTACTTCACCTATTTAGGATGTGAACGCTGCCACCAATGTGCATCATAGTTTGCAGGGTGCTGTTATCCCTAGTTCCGGCTCTGTGGGCATGAGAATACAATATCCTTTTCTATATCAAATTGTTCTGTTTGATGCTAGCTATAGAACTATCTTACCTATCCTAATTTAATGGTTGACTTGTGCTACTTATAGGTGTTATGCTTTGAATCTTATTTTAGAAAAATTCTGAATATGTAAGTGCTGCAAGTTACCTTGAACAAATTGGGTACTTATCATGTCTGTTAGACTTGAGGTATTTCGTTGGATCGGCTTCTTATATATTTGATCTCTGTTTTACTTTTTAATAGCACAGTGGAAATTATATATTAGTGGAGCCTCGTACTCGTAGATGAGCCAGGTGTTGTTAGGGAATAGTGTTTTTTTTTCTTTCTATATATGTATGCATGCATGCATGCATGTATGTAGTATATGTTCTTGAAGATACATGTATTGTTTGCTGAATGTGGTGCTGTACGTTATTACCAATCAACTATTCATATTGTAACAAATTAATAACAATTAGTTTTCATTTCCAACATTGCAGTGCAATTCTTGTTGATGTTTGTCAACGTATGTGATTTAAGTTTTGCAAACATATGCATAATGTGATTTCTTCAACTGGGATTAATCACGTAGCCATTTGAACTTGATGTTTATTTCATCAATTGTTGTTTTCATGATTGAGGATACATGTTTCTTCTCTTGACTCACGAATACATTCTCAAAGAACCCGTTTGGGAAACGGAAGGATGCTACCTACCCTGTTTCTGCTCCTGGCGCGAACGGAACTCCACAAGCTATGGCATACCAATAG

mRNA sequence

ATGGCCGGTACTGGAATCCACCCGTACCACCAGCAATGGCCTGCTGCCGCCGCCGCTCCTCCTCCTCCTCCGCCACAAGCCACCGCCGCTGCTCCTCCTCCCATTCCCCACCCCCATCCTCCTCAGATCCTTGTCGACAACCCCGGCCGCCATGCCTCTGATGAGGTTCGAACTATATTTATAACTGGTCTTCCTGAAGATGTAAAAGAGAGAGAGCTACAGAATCTTCTCAGATGGTTACCTGGTTACGAGGCTTCACAAGTAAATTTCAAAGGTGAAAAGCCTATGGGCTTTGCTCTATTCTCCAATGCCCAGTTTGCTATTGCTGCGAAAGATGCCCTTCAGGATATGGTTTTTGATGCGGAGTCTAAGTCAGTGTTGCACACGGAGATGGCCAAGAAAAATCTATTTGTTAAACGAGGCATTGTTGCTGATGCAAGTGCTTATGACCAAAGTAAACGTTTGAGAACTGGTGGTGACTGTGCCCACACCGGATATTCAAGCCCATCACCTTTTCATGCACCTCCACCCCCTATTTGGGGGCCTCATGGGTATATGGCTCCACCTCCTCCTCCATACGATCCGTATGGAGGTTACGCTGTTCCTCCTGTACCTATGCCTGCTCCTGCACCTGTACCAGCACCTAGCAGCTATGTGCCTGTTCAGAACACTAAAGATAATCCTCCTTGCAATACCCTGTTTATTGGCAATCTGGGGGAAAATGTAAATGAAGAGGAACTCAGAGGTCTTTTTAGCGTACAGCCTGGATTTAAGCAAATGAAGATTCTGAGGCAGGAAAGGCACACGGTGTGCTTCATTGAGTTTGAAAACCCGTTTGGGAAACGGAAGGATGCTACCTACCCTGTTTCTGCTCCTGGCGCGAACGGAACTCCACAAGCTATGGCATACCAATAG

Coding sequence (CDS)

ATGGCCGGTACTGGAATCCACCCGTACCACCAGCAATGGCCTGCTGCCGCCGCCGCTCCTCCTCCTCCTCCGCCACAAGCCACCGCCGCTGCTCCTCCTCCCATTCCCCACCCCCATCCTCCTCAGATCCTTGTCGACAACCCCGGCCGCCATGCCTCTGATGAGGTTCGAACTATATTTATAACTGGTCTTCCTGAAGATGTAAAAGAGAGAGAGCTACAGAATCTTCTCAGATGGTTACCTGGTTACGAGGCTTCACAAGTAAATTTCAAAGGTGAAAAGCCTATGGGCTTTGCTCTATTCTCCAATGCCCAGTTTGCTATTGCTGCGAAAGATGCCCTTCAGGATATGGTTTTTGATGCGGAGTCTAAGTCAGTGTTGCACACGGAGATGGCCAAGAAAAATCTATTTGTTAAACGAGGCATTGTTGCTGATGCAAGTGCTTATGACCAAAGTAAACGTTTGAGAACTGGTGGTGACTGTGCCCACACCGGATATTCAAGCCCATCACCTTTTCATGCACCTCCACCCCCTATTTGGGGGCCTCATGGGTATATGGCTCCACCTCCTCCTCCATACGATCCGTATGGAGGTTACGCTGTTCCTCCTGTACCTATGCCTGCTCCTGCACCTGTACCAGCACCTAGCAGCTATGTGCCTGTTCAGAACACTAAAGATAATCCTCCTTGCAATACCCTGTTTATTGGCAATCTGGGGGAAAATGTAAATGAAGAGGAACTCAGAGGTCTTTTTAGCGTACAGCCTGGATTTAAGCAAATGAAGATTCTGAGGCAGGAAAGGCACACGGTGTGCTTCATTGAGTTTGAAAACCCGTTTGGGAAACGGAAGGATGCTACCTACCCTGTTTCTGCTCCTGGCGCGAACGGAACTCCACAAGCTATGGCATACCAATAG

Protein sequence

MAGTGIHPYHQQWPAAAAAPPPPPPQATAAAPPPIPHPHPPQILVDNPGRHASDEVRTIFITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDCAHTGYSSPSPFHAPPPPIWGPHGYMAPPPPPYDPYGGYAVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFENPFGKRKDATYPVSAPGANGTPQAMAYQ

Homology

[Close]

BLAST of HG10023393.1 vs. NCBI nr
Match: XP_008462228.1 (PREDICTED: RNA-binding protein with multiple splicing [Cucumis melo])

HSP 1 Score: 585.5 bits (1508), Expect = 2.7e-163
Identity = 299/335 (89.25%), Postives = 299/335 (89.25%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQATAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60
           MAGTGIHPYHQQWPAAAAAPPPPPPQA AAAPPPIPHPHPPQILVDNPGRHASDEVRTIF
Sbjct: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60

Query: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120
           ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD
Sbjct: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120

Query: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDCAHTGYSSPSPFHAPPPPIW 180
           AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGD AHTGYSSPSPFHAPPPPIW
Sbjct: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180

Query: 181 GPHGYMAPPPPPYDPYGGYAVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240
           GPHGYMAPPPPPYDPYGGY VPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE
Sbjct: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240

Query: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFE------------------------ 300
           NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFE                        
Sbjct: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNNATNVHHSLQGAVIPSSGSVG 300

Query: 301 -------NPFGKRKDATYPVSAPGANGTPQAMAYQ 305
                  NPFGKRKDA YPVSAPG NGTPQAMAYQ
Sbjct: 301 MRIQFSKNPFGKRKDAAYPVSAPGVNGTPQAMAYQ 335

[Close]

BLAST of HG10023393.1 vs. NCBI nr
Match: XP_004141738.1 (RNA-binding protein with multiple splicing 2 [Cucumis sativus])

HSP 1 Score: 583.9 bits (1504), Expect = 7.7e-163
Identity = 298/335 (88.96%), Postives = 298/335 (88.96%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQATAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60
           MAGTGIHPYHQQWPAAAAAPPPPPPQA AAAPPPIPHPHPPQILVDNPGRHASDEVRTIF
Sbjct: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60

Query: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120
           ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD
Sbjct: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120

Query: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDCAHTGYSSPSPFHAPPPPIW 180
           AESKSVLHTEMAKKNLFVKRGIVADAS YDQSKRLRTGGD AHTGYSSPSPFHAPPPPIW
Sbjct: 121 AESKSVLHTEMAKKNLFVKRGIVADASVYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180

Query: 181 GPHGYMAPPPPPYDPYGGYAVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240
           GPHGYMAPPPPPYDPYGGY VPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE
Sbjct: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240

Query: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFE------------------------ 300
           NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFE                        
Sbjct: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNNATNVHHSLQGAVIPSSGSVG 300

Query: 301 -------NPFGKRKDATYPVSAPGANGTPQAMAYQ 305
                  NPFGKRKDA YPVSAPG NGTPQAMAYQ
Sbjct: 301 MRIQFSKNPFGKRKDAAYPVSAPGVNGTPQAMAYQ 335

[Close]

BLAST of HG10023393.1 vs. NCBI nr
Match: KAA0059349.1 (RNA-binding protein with multiple splicing [Cucumis melo var. makuwa])

HSP 1 Score: 583.9 bits (1504), Expect = 7.7e-163
Identity = 299/339 (88.20%), Postives = 299/339 (88.20%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQATAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60
           MAGTGIHPYHQQWPAAAAAPPPPPPQA AAAPPPIPHPHPPQILVDNPGRHASDEVRTIF
Sbjct: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60

Query: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120
           ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD
Sbjct: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120

Query: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDCAHTGYSSPSPFHAPPPPIW 180
           AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGD AHTGYSSPSPFHAPPPPIW
Sbjct: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180

Query: 181 GPHGYMAPPPPPYDPYGGYAVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240
           GPHGYMAPPPPPYDPYGGY VPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE
Sbjct: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240

Query: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFE------------------------ 300
           NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFE                        
Sbjct: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNNATNVHHSLQGAVIPSSGSVG 300

Query: 301 -----------NPFGKRKDATYPVSAPGANGTPQAMAYQ 305
                      NPFGKRKDA YPVSAPG NGTPQAMAYQ
Sbjct: 301 MRIQYPFLYQINPFGKRKDAAYPVSAPGVNGTPQAMAYQ 339

[Close]

BLAST of HG10023393.1 vs. NCBI nr
Match: XP_038898734.1 (RNA-binding protein with multiple splicing 2 [Benincasa hispida])

HSP 1 Score: 582.4 bits (1500), Expect = 2.3e-162
Identity = 300/335 (89.55%), Postives = 300/335 (89.55%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQATAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60
           MAGTGIHPYHQQWPAAAAAPPPPPPQA AAAPPPIPHPH PQILVDNPGRHASDEVRTIF
Sbjct: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAAPPPIPHPH-PQILVDNPGRHASDEVRTIF 60

Query: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120
           ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD
Sbjct: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120

Query: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDCAHTGYSSPSPFHAPPPPIW 180
           AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGD AHTGYSSPSPFHAPPPPIW
Sbjct: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180

Query: 181 GPHGYMAPPPPPYDPYGGYAVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240
           GPHGYMAPPPPPYDPYGGY VPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE
Sbjct: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240

Query: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFE------------------------ 300
           NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFE                        
Sbjct: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNTATNVHHSLQGAVIPSSGSVG 300

Query: 301 -------NPFGKRKDATYPVSAPGANGTPQAMAYQ 305
                  NPFGKRKDATYPVSAPGANGTPQAMAYQ
Sbjct: 301 MRIQFSKNPFGKRKDATYPVSAPGANGTPQAMAYQ 334

[Close]

BLAST of HG10023393.1 vs. NCBI nr
Match: TYK03977.1 (RNA-binding protein with multiple splicing [Cucumis melo var. makuwa])

HSP 1 Score: 578.2 bits (1489), Expect = 4.2e-161
Identity = 299/354 (84.46%), Postives = 299/354 (84.46%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQATAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60
           MAGTGIHPYHQQWPAAAAAPPPPPPQA AAAPPPIPHPHPPQILVDNPGRHASDEVRTIF
Sbjct: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60

Query: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120
           ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD
Sbjct: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120

Query: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDCAHTGYSSPSPFHAPPPPIW 180
           AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGD AHTGYSSPSPFHAPPPPIW
Sbjct: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180

Query: 181 GPHGYMAPPPPPYDPYGGYAVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240
           GPHGYMAPPPPPYDPYGGY VPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE
Sbjct: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240

Query: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFE------------------------ 300
           NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFE                        
Sbjct: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNNATNVHHSLQGAVIPSSGSVG 300

Query: 301 --------------------------NPFGKRKDATYPVSAPGANGTPQAMAYQ 305
                                     NPFGKRKDA YPVSAPG NGTPQAMAYQ
Sbjct: 301 MRIQYPFLYQIVFYYVSRRTILPILLNPFGKRKDAAYPVSAPGVNGTPQAMAYQ 354

[Close]

BLAST of HG10023393.1 vs. ExPASy Swiss-Prot
Match: Q8VC52 (RNA-binding protein with multiple splicing 2 OS=Mus musculus OX=10090 GN=Rbpms2 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-12
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 49  GRHASDEVRTIFITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAI 108
           G    +EVRT+F++GLP D+K REL  L R   GYE S +     +P+GF +F +   A 
Sbjct: 17  GSPLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQPVGFVIFDSRAGAE 76

Query: 109 AAKDALQDMVFDAESKSVLHTEMAKKN 136
           AAK+AL  + FD E+   L  E AK N
Sbjct: 77  AAKNALNGIRFDPENPQTLRLEFAKAN 103

[Close]

BLAST of HG10023393.1 vs. ExPASy Swiss-Prot
Match: Q6ZRY4 (RNA-binding protein with multiple splicing 2 OS=Homo sapiens OX=9606 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-12
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 49  GRHASDEVRTIFITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAI 108
           G    +EVRT+F++GLP D+K REL  L R   GYE S +     +P+GF +F +   A 
Sbjct: 23  GGALEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTARQPVGFVIFDSRAGAE 82

Query: 109 AAKDALQDMVFDAESKSVLHTEMAKKN 136
           AAK+AL  + FD E+   L  E AK N
Sbjct: 83  AAKNALNGIRFDPENPQTLRLEFAKAN 109

[Close]

BLAST of HG10023393.1 vs. ExPASy Swiss-Prot
Match: Q9YGP5 (RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-09
Identity = 51/163 (31.29%), Postives = 73/163 (44.79%), Query Frame = 0


Query: 46  DNPGRHASDEVRTIFITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQ 105
           ++   +  +EVRT+F++GLP D+K REL  L R   GYE S +    ++P+GF  F N  
Sbjct: 9   EHNNNNIEEEVRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDNRA 68

Query: 106 FAIAAKDALQDMVFDAESKSVLHTEMAKKNL-FVKRGIVADASAYDQSKRLRTGGDCAHT 165
            A AAK+AL  + FD E+   L  E AK N    K  ++A  +  +    L      AH 
Sbjct: 69  GAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKNKLMATPNPTNFHPALG-----AHF 128

Query: 166 GYSSPSPFHA-----PPPPIWGPHGYMAPPPPPYDPYGGYAVP 203
               P  F         P  W P+        P  P+  +  P
Sbjct: 129 IARDPYDFTGAALIPASPEAWAPYPLYTAELAPAIPHAAFTYP 166

[Close]

BLAST of HG10023393.1 vs. ExPASy Swiss-Prot
Match: Q93062 (RNA-binding protein with multiple splicing OS=Homo sapiens OX=9606 GN=RBPMS PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.0e-08
Identity = 52/168 (30.95%), Postives = 74/168 (44.05%), Query Frame = 0


Query: 54  DEVRTIFITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDA 113
           +EVRT+F++GLP D+K REL  L R   GYE S +    ++P+GF  F +   A AAK+A
Sbjct: 21  EEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNA 80

Query: 114 LQDMVFDAESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDCAHTGYSSPSP-F 173
           L  + FD E    L  E AK N  + +  +                  A   Y    P  
Sbjct: 81  LNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPAL 140

Query: 174 HAPPPPIWGPHGYMAPPPPPYDPYGGYAVPPVPMPAPAPVPAPSSYVP 221
           +   P +W P+       P Y      A+PP     PA + A   ++P
Sbjct: 141 YPSSPEVWAPY-------PLYPAELAPALPPPAFTYPASLHAQMRWLP 181

[Close]

BLAST of HG10023393.1 vs. ExPASy Swiss-Prot
Match: Q9W6I1 (RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.7e-08
Identity = 53/180 (29.44%), Postives = 78/180 (43.33%), Query Frame = 0


Query: 47  NPGRHASDEVRTIFITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQF 106
           N G +  +EVRT+F++GLP D+K REL  L R   GYE S +    ++P+GF  F +   
Sbjct: 12  NGGGNVEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDSRAG 71

Query: 107 AIAAKDALQDMVFDAESKSVLHTEMAKKNL-FVKRGIVADASAYDQSKRLRTGGDCAHTG 166
           A AAK+AL  + FD E+   L  E AK N    K  ++A  +  +    L          
Sbjct: 72  AEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKLMATPNPTNIHPALGAHFIARDPY 131

Query: 167 YSSPSPFHAPPPPIWGPHGYMAPPPPPYDPYGGYAVPPVPMPAPAPVPAPSSYVPVQNTK 226
             + +      P  W P+        P  P+  +  P     A A       Y P + T+
Sbjct: 132 DLTGAALIPASPEAWAPYPLYTTELTPAIPHAAFTYPAAAAAAAALHAQMRWYPPSEATQ 191

[Close]

BLAST of HG10023393.1 vs. ExPASy TrEMBL
Match: A0A1S3CH02 (RNA-binding protein with multiple splicing OS=Cucumis melo OX=3656 GN=LOC103500634 PE=4 SV=1)

HSP 1 Score: 585.5 bits (1508), Expect = 1.3e-163
Identity = 299/335 (89.25%), Postives = 299/335 (89.25%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQATAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60
           MAGTGIHPYHQQWPAAAAAPPPPPPQA AAAPPPIPHPHPPQILVDNPGRHASDEVRTIF
Sbjct: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60

Query: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120
           ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD
Sbjct: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120

Query: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDCAHTGYSSPSPFHAPPPPIW 180
           AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGD AHTGYSSPSPFHAPPPPIW
Sbjct: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180

Query: 181 GPHGYMAPPPPPYDPYGGYAVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240
           GPHGYMAPPPPPYDPYGGY VPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE
Sbjct: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240

Query: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFE------------------------ 300
           NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFE                        
Sbjct: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNNATNVHHSLQGAVIPSSGSVG 300

Query: 301 -------NPFGKRKDATYPVSAPGANGTPQAMAYQ 305
                  NPFGKRKDA YPVSAPG NGTPQAMAYQ
Sbjct: 301 MRIQFSKNPFGKRKDAAYPVSAPGVNGTPQAMAYQ 335

[Close]

BLAST of HG10023393.1 vs. ExPASy TrEMBL
Match: A0A5A7V0M8 (RNA-binding protein with multiple splicing OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G00740 PE=4 SV=1)

HSP 1 Score: 583.9 bits (1504), Expect = 3.7e-163
Identity = 299/339 (88.20%), Postives = 299/339 (88.20%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQATAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60
           MAGTGIHPYHQQWPAAAAAPPPPPPQA AAAPPPIPHPHPPQILVDNPGRHASDEVRTIF
Sbjct: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60

Query: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120
           ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD
Sbjct: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120

Query: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDCAHTGYSSPSPFHAPPPPIW 180
           AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGD AHTGYSSPSPFHAPPPPIW
Sbjct: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180

Query: 181 GPHGYMAPPPPPYDPYGGYAVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240
           GPHGYMAPPPPPYDPYGGY VPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE
Sbjct: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240

Query: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFE------------------------ 300
           NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFE                        
Sbjct: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNNATNVHHSLQGAVIPSSGSVG 300

Query: 301 -----------NPFGKRKDATYPVSAPGANGTPQAMAYQ 305
                      NPFGKRKDA YPVSAPG NGTPQAMAYQ
Sbjct: 301 MRIQYPFLYQINPFGKRKDAAYPVSAPGVNGTPQAMAYQ 339

[Close]

BLAST of HG10023393.1 vs. ExPASy TrEMBL
Match: A0A0A0K6S7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447920 PE=4 SV=1)

HSP 1 Score: 583.9 bits (1504), Expect = 3.7e-163
Identity = 298/335 (88.96%), Postives = 298/335 (88.96%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQATAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60
           MAGTGIHPYHQQWPAAAAAPPPPPPQA AAAPPPIPHPHPPQILVDNPGRHASDEVRTIF
Sbjct: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60

Query: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120
           ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD
Sbjct: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120

Query: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDCAHTGYSSPSPFHAPPPPIW 180
           AESKSVLHTEMAKKNLFVKRGIVADAS YDQSKRLRTGGD AHTGYSSPSPFHAPPPPIW
Sbjct: 121 AESKSVLHTEMAKKNLFVKRGIVADASVYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180

Query: 181 GPHGYMAPPPPPYDPYGGYAVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240
           GPHGYMAPPPPPYDPYGGY VPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE
Sbjct: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240

Query: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFE------------------------ 300
           NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFE                        
Sbjct: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNNATNVHHSLQGAVIPSSGSVG 300

Query: 301 -------NPFGKRKDATYPVSAPGANGTPQAMAYQ 305
                  NPFGKRKDA YPVSAPG NGTPQAMAYQ
Sbjct: 301 MRIQFSKNPFGKRKDAAYPVSAPGVNGTPQAMAYQ 335

[Close]

BLAST of HG10023393.1 vs. ExPASy TrEMBL
Match: A0A5D3BWV1 (RNA-binding protein with multiple splicing OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001750 PE=4 SV=1)

HSP 1 Score: 578.2 bits (1489), Expect = 2.1e-161
Identity = 299/354 (84.46%), Postives = 299/354 (84.46%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQATAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60
           MAGTGIHPYHQQWPAAAAAPPPPPPQA AAAPPPIPHPHPPQILVDNPGRHASDEVRTIF
Sbjct: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60

Query: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120
           ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD
Sbjct: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120

Query: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDCAHTGYSSPSPFHAPPPPIW 180
           AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGD AHTGYSSPSPFHAPPPPIW
Sbjct: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPIW 180

Query: 181 GPHGYMAPPPPPYDPYGGYAVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240
           GPHGYMAPPPPPYDPYGGY VPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE
Sbjct: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240

Query: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFE------------------------ 300
           NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFE                        
Sbjct: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNNATNVHHSLQGAVIPSSGSVG 300

Query: 301 --------------------------NPFGKRKDATYPVSAPGANGTPQAMAYQ 305
                                     NPFGKRKDA YPVSAPG NGTPQAMAYQ
Sbjct: 301 MRIQYPFLYQIVFYYVSRRTILPILLNPFGKRKDAAYPVSAPGVNGTPQAMAYQ 354

[Close]

BLAST of HG10023393.1 vs. ExPASy TrEMBL
Match: A0A6J1D0G5 (RNA-binding protein with multiple splicing 2 OS=Momordica charantia OX=3673 GN=LOC111016248 PE=4 SV=1)

HSP 1 Score: 567.8 bits (1462), Expect = 2.8e-158
Identity = 292/335 (87.16%), Postives = 294/335 (87.76%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQATAAAPPPIPHPHPPQILVDNPGRHASDEVRTIF 60
           MAGTGIHPYHQQWPAAAAAPPPPPPQA AAA PPIP PHPPQILVDNPGRH SDEVRTIF
Sbjct: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQAAAAA-PPIPRPHPPQILVDNPGRHGSDEVRTIF 60

Query: 61  ITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120
           ITGLPEDV+ERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD
Sbjct: 61  ITGLPEDVRERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQDMVFD 120

Query: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDCAHTGYSSPSPFHAPPPPIW 180
           AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGD AHTGYSSPSPFHAPPPP+W
Sbjct: 121 AESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDYAHTGYSSPSPFHAPPPPMW 180

Query: 181 GPHGYMAPPPPPYDPYGGYAVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240
           GPHGYMAPPPPPYDPYGGY VPPVPMP PAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE
Sbjct: 181 GPHGYMAPPPPPYDPYGGYPVPPVPMPTPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE 240

Query: 241 NVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFE------------------------ 300
           NVNEEEL GLFSVQPGFKQMKILRQERHTVCFIEFE                        
Sbjct: 241 NVNEEELGGLFSVQPGFKQMKILRQERHTVCFIEFEDVNTATNVHHSLQGAVIPSSGSVG 300

Query: 301 -------NPFGKRKDATYPVSAPGANGTPQAMAYQ 305
                  NPFGKRKDATYPVSAP  NGTPQAMAYQ
Sbjct: 301 MRIQFSKNPFGKRKDATYPVSAPSVNGTPQAMAYQ 334

[Close]

BLAST of HG10023393.1 vs. TAIR 10
Match: AT3G21215.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 441.8 bits (1135), Expect = 4.4e-124
Identity = 239/344 (69.48%), Postives = 258/344 (75.00%), Query Frame = 0


Query: 1   MAGTGIHPYHQQWPAAAAAPPPPPPQATAAAPPPIP----HPHPPQILVDNPGRHASDEV 60
           MAG GIHPYHQQWP A A  PPPP   ++AAPP  P    HP PP +LVDN  R   DE+
Sbjct: 1   MAGAGIHPYHQQWPPAGA--PPPPAAVSSAAPPHPPPIHHHPPPPPVLVDNHNRPPYDEL 60

Query: 61  RTIFITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSNAQFAIAAKDALQD 120
           RTIFI GLP+DVKEREL NLLRWLPGYEASQVNFKGEKPMGFALFS AQFA+AAKD LQ 
Sbjct: 61  RTIFIAGLPDDVKERELLNLLRWLPGYEASQVNFKGEKPMGFALFSTAQFAMAAKDTLQH 120

Query: 121 MVFDAESKSVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDCAHTGYSSPSPFHAPP 180
           MVFDAESKSV+HTEMAKKNLFVKRGIV D++AYDQSKRLRTGGDC H+ Y SPSPFH PP
Sbjct: 121 MVFDAESKSVIHTEMAKKNLFVKRGIVGDSNAYDQSKRLRTGGDCTHSVY-SPSPFHPPP 180

Query: 181 PPIWG-PHGYMAPPPPPYDPYGGYAVPPVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFI 240
           PP+WG PHGYMAP PPPYDPY GY  PPVPMP P P+ APSSYVPVQN KDNPPCNTLFI
Sbjct: 181 PPVWGPPHGYMAPAPPPYDPYAGYHAPPVPMPTPPPIAAPSSYVPVQNIKDNPPCNTLFI 240

Query: 241 GNLGENVNEEELRGLFSVQPGFKQMKILRQERHTVCFIEFE------------------- 300
           GNLGEN+NEEELR L S QPGFKQMKILRQERHTVCFIEFE                   
Sbjct: 241 GNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATNVHHNLQGAVIPS 300

Query: 301 ------------NPFGKRKD----ATYPVSAPGANGTPQAMAYQ 305
                       NP+GKRK+    + +P  +P ANG   A+ YQ
Sbjct: 301 SGSIGMRIQYSKNPYGKRKEGGGYSFFP--SPSANGAQGALTYQ 339

[Close]

BLAST of HG10023393.1 vs. TAIR 10
Match: AT2G42240.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 110.2 bits (274), Expect = 3.1e-24
Identity = 97/275 (35.27%), Postives = 129/275 (46.91%), Query Frame = 0


Query: 6   IHPYHQQWPAAAAAPPPPPPQATAAAPPPIPHPHPPQILVDNPGRHASDEVRTIFITGLP 65
           +  Y+  +   A  PPPPP      +P PI   H    L  +    A DEVRT+F+ GLP
Sbjct: 4   LEAYYSHYNLPAMVPPPPP----GVSPIPITSAH-SVYLPTHVSIGARDEVRTLFVAGLP 63

Query: 66  EDVKERELQNLLRWLPGYEASQV-NFKGEKPMGFALFSNAQFAIAAKDALQDMVFDAESK 125
           EDVK RE+ NL R  PGYE S + +  G KP  FA+FS+ Q A+A   AL  MVFD E  
Sbjct: 64  EDVKPREIYNLFREFPGYETSHLRSSDGAKPFAFAVFSDLQSAVAVMHALNGMVFDLEKH 123

Query: 126 SVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDCAHTGYSSPSPFHAPPPPIWGPHG 185
           S LH ++AK N   KR    D   ++  K+L++      +G+                 G
Sbjct: 124 STLHIDLAKSNPKSKRSRTDD--GWESLKKLKSWNTTTESGF-----------------G 183

Query: 186 YMAPPPPPYDPYGGYAVPPVPMPAPAPVP--APSSYVPVQNTKDNPPCNTLFIGNLGENV 245
               P      Y      P      A V   AP+S  P   +K   PC TLFI N+G N 
Sbjct: 184 SFQTPGMSSSAYNTIGYSPAQSQGIANVAGRAPTSRKP---SKAADPCPTLFIANMGPNC 243

Query: 246 NEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEN 278
            E EL  +FS   GF ++KI       V F++F++
Sbjct: 244 TEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQD 251

[Close]

BLAST of HG10023393.1 vs. TAIR 10
Match: AT2G42240.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 110.2 bits (274), Expect = 3.1e-24
Identity = 97/275 (35.27%), Postives = 129/275 (46.91%), Query Frame = 0


Query: 6   IHPYHQQWPAAAAAPPPPPPQATAAAPPPIPHPHPPQILVDNPGRHASDEVRTIFITGLP 65
           +  Y+  +   A  PPPPP      +P PI   H    L  +    A DEVRT+F+ GLP
Sbjct: 4   LEAYYSHYNLPAMVPPPPP----GVSPIPITSAH-SVYLPTHVSIGARDEVRTLFVAGLP 63

Query: 66  EDVKERELQNLLRWLPGYEASQV-NFKGEKPMGFALFSNAQFAIAAKDALQDMVFDAESK 125
           EDVK RE+ NL R  PGYE S + +  G KP  FA+FS+ Q A+A   AL  MVFD E  
Sbjct: 64  EDVKPREIYNLFREFPGYETSHLRSSDGAKPFAFAVFSDLQSAVAVMHALNGMVFDLEKH 123

Query: 126 SVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDCAHTGYSSPSPFHAPPPPIWGPHG 185
           S LH ++AK N   KR    D   ++  K+L++      +G+                 G
Sbjct: 124 STLHIDLAKSNPKSKRSRTDD--GWESLKKLKSWNTTTESGF-----------------G 183

Query: 186 YMAPPPPPYDPYGGYAVPPVPMPAPAPVP--APSSYVPVQNTKDNPPCNTLFIGNLGENV 245
               P      Y      P      A V   AP+S  P   +K   PC TLFI N+G N 
Sbjct: 184 SFQTPGMSSSAYNTIGYSPAQSQGIANVAGRAPTSRKP---SKAADPCPTLFIANMGPNC 243

Query: 246 NEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEN 278
            E EL  +FS   GF ++KI       V F++F++
Sbjct: 244 TEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQD 251

[Close]

BLAST of HG10023393.1 vs. TAIR 10
Match: AT2G42240.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 110.2 bits (274), Expect = 3.1e-24
Identity = 97/275 (35.27%), Postives = 129/275 (46.91%), Query Frame = 0


Query: 6   IHPYHQQWPAAAAAPPPPPPQATAAAPPPIPHPHPPQILVDNPGRHASDEVRTIFITGLP 65
           +  Y+  +   A  PPPPP      +P PI   H    L  +    A DEVRT+F+ GLP
Sbjct: 4   LEAYYSHYNLPAMVPPPPP----GVSPIPITSAH-SVYLPTHVSIGARDEVRTLFVAGLP 63

Query: 66  EDVKERELQNLLRWLPGYEASQV-NFKGEKPMGFALFSNAQFAIAAKDALQDMVFDAESK 125
           EDVK RE+ NL R  PGYE S + +  G KP  FA+FS+ Q A+A   AL  MVFD E  
Sbjct: 64  EDVKPREIYNLFREFPGYETSHLRSSDGAKPFAFAVFSDLQSAVAVMHALNGMVFDLEKH 123

Query: 126 SVLHTEMAKKNLFVKRGIVADASAYDQSKRLRTGGDCAHTGYSSPSPFHAPPPPIWGPHG 185
           S LH ++AK N   KR    D   ++  K+L++      +G+                 G
Sbjct: 124 STLHIDLAKSNPKSKRSRTDD--GWESLKKLKSWNTTTESGF-----------------G 183

Query: 186 YMAPPPPPYDPYGGYAVPPVPMPAPAPVP--APSSYVPVQNTKDNPPCNTLFIGNLGENV 245
               P      Y      P      A V   AP+S  P   +K   PC TLFI N+G N 
Sbjct: 184 SFQTPGMSSSAYNTIGYSPAQSQGIANVAGRAPTSRKP---SKAADPCPTLFIANMGPNC 243

Query: 246 NEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEN 278
            E EL  +FS   GF ++KI       V F++F++
Sbjct: 244 TEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQD 251

[Close]

BLAST of HG10023393.1 vs. TAIR 10
Match: AT3G13700.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-16
Identity = 81/255 (31.76%), Postives = 121/255 (47.45%), Query Frame = 0


Query: 36  PHPHPPQ--ILVDNPGRHASDEVRTIFITGLPEDVKERELQNLLRWLPGYEASQVNF--K 95
           PH  PPQ  +L D PG      + T+F++GLP DVK RE+ NL R   G+E+ Q+ +  +
Sbjct: 19  PHHLPPQLPLLADEPG-----AINTLFVSGLPNDVKAREIHNLFRRRHGFESCQLKYTGR 78

Query: 96  GEKPMGFALFSNAQFAIAAKDALQDMVFDAESKSVLHTEMAKKNLFVKRG------IVAD 155
           G++ + FA F++ +FA+AA + L  + FD ++ S LH E+A+ N   K        +V D
Sbjct: 79  GDQVVAFATFTSHRFALAAMNELNGVKFDPQTGSNLHIELARSNSRRKERPGSGPYVVID 138

Query: 156 ASAYDQSKRLRTGGDCAHTGYSSPSPFHAPPPPIWGPHGYMAPPPPPYDPYGGYAVPPVP 215
               + SK   +  D +  G S P     P           +  P   D     A     
Sbjct: 139 NRNKEISK---SQDDQSDEGDSDPDEVQEPG---------NSDSPKENDTTKSEA----- 198

Query: 216 MPAPAPVPAPSSYVPVQNTKDN----PPCNTLFIGNLGENVNEEELRGLFSVQPGFKQMK 275
             +     APS+   ++   +       C+TLFI NLG N  E+EL+ L S  PGF  +K
Sbjct: 199 -DSEPDSKAPSANGHLEKASEGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILK 250

Query: 276 ILRQERHTVCFIEFE 277
           I  +    V F +FE
Sbjct: 259 IRARGGMPVAFADFE 250

The following BLAST results are available for this feature:

BLAST of HG10023393.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462228.1	2.7e-163	89.25	PREDICTED: RNA-binding protein with multiple splicing [Cucumis melo]	[more]
XP_004141738.1	7.7e-163	88.96	RNA-binding protein with multiple splicing 2 [Cucumis sativus]	[more]
KAA0059349.1	7.7e-163	88.20	RNA-binding protein with multiple splicing [Cucumis melo var. makuwa]	[more]
XP_038898734.1	2.3e-162	89.55	RNA-binding protein with multiple splicing 2 [Benincasa hispida]	[more]
TYK03977.1	4.2e-161	84.46	RNA-binding protein with multiple splicing [Cucumis melo var. makuwa]	[more]

BLAST of HG10023393.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VC52	1.2e-12	43.68	RNA-binding protein with multiple splicing 2 OS=Mus musculus OX=10090 GN=Rbpms2 ...	[more]
Q6ZRY4	1.5e-12	43.68	RNA-binding protein with multiple splicing 2 OS=Homo sapiens OX=9606 GN=RBPMS2 P...	[more]
Q9YGP5	2.7e-09	31.29	RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2...	[more]
Q93062	3.0e-08	30.95	RNA-binding protein with multiple splicing OS=Homo sapiens OX=9606 GN=RBPMS PE=1...	[more]
Q9W6I1	8.7e-08	29.44	RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 ...	[more]

BLAST of HG10023393.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CH02	1.3e-163	89.25	RNA-binding protein with multiple splicing OS=Cucumis melo OX=3656 GN=LOC1035006...	[more]
A0A5A7V0M8	3.7e-163	88.20	RNA-binding protein with multiple splicing OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0K6S7	3.7e-163	88.96	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447920 PE=4 SV...	[more]
A0A5D3BWV1	2.1e-161	84.46	RNA-binding protein with multiple splicing OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1D0G5	2.8e-158	87.16	RNA-binding protein with multiple splicing 2 OS=Momordica charantia OX=3673 GN=L...	[more]

BLAST of HG10023393.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21215.1	4.4e-124	69.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.1	3.1e-24	35.27	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.2	3.1e-24	35.27	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.3	3.1e-24	35.27	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13700.2	1.1e-16	31.76	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 58..128 e-value: 0.019 score: 21.8 coord: 232..299 e-value: 0.98 score: 6.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 59..120 e-value: 2.2E-5 score: 24.2 coord: 233..278 e-value: 2.5E-7 score: 30.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 231..278 score: 9.012812
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 51..138 e-value: 2.5E-17 score: 64.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 218..286 e-value: 1.1E-14 score: 56.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..43
None	No IPR available	PANTHER	PTHR10501:SF49	CELL WALL INTEGRITY PROTEIN SCW1	coord: 1..277
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 1..277
None	No IPR available	CDD	cd12420	RRM_RBPMS_like	coord: 57..130 e-value: 6.02169E-36 score: 122.378
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 55..278

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10023393	HG10023393	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10023393.1-cds	HG10023393.1-cds-Chr05:33726192..33726278	CDS
HG10023393.1-cds	HG10023393.1-cds-Chr05:33727142..33727211	CDS
HG10023393.1-cds	HG10023393.1-cds-Chr05:33727319..33727410	CDS
HG10023393.1-cds	HG10023393.1-cds-Chr05:33727782..33727896	CDS
HG10023393.1-cds	HG10023393.1-cds-Chr05:33728124..33728253	CDS
HG10023393.1-cds	HG10023393.1-cds-Chr05:33728698..33728773	CDS
HG10023393.1-cds	HG10023393.1-cds-Chr05:33728859..33729038	CDS
HG10023393.1-cds	HG10023393.1-cds-Chr05:33729257..33729421	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10023393.1	HG10023393.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003729	mRNA binding