HG10022625.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022625.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr05: 26398634 .. 26398900 (-)
Sequence length	267
RNA-Seq Expression	HG10022625.1
Synteny	HG10022625.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGGATGACTCCTAAGATTACAATGGTGAAACGTATCATGTTGGTGTTGTTGCTCACAAGCTCTTGGTTATTCCTTATTGATGGGAAGAGACCTTTGCTTCATGATCAACTGAAGAATCAACACCAAGAGCAGCATCAACTTAATCAGATTGAGGATAATAAACTTGAATTGAATGATGAACTGAATGATAAACATCACGTATGTGATATAATTAACTATCCATGCTGGAAAAAAAATGAAAAAGTTGGGAACAATCCCTAA

mRNA sequence

ATGGTGAGGATGACTCCTAAGATTACAATGGTGAAACGTATCATGTTGGTGTTGTTGCTCACAAGCTCTTGGTTATTCCTTATTGATGGGAAGAGACCTTTGCTTCATGATCAACTGAAGAATCAACACCAAGAGCAGCATCAACTTAATCAGATTGAGGATAATAAACTTGAATTGAATGATGAACTGAATGATAAACATCACGTATGTGATATAATTAACTATCCATGCTGGAAAAAAAATGAAAAAGTTGGGAACAATCCCTAA

Coding sequence (CDS)

ATGGTGAGGATGACTCCTAAGATTACAATGGTGAAACGTATCATGTTGGTGTTGTTGCTCACAAGCTCTTGGTTATTCCTTATTGATGGGAAGAGACCTTTGCTTCATGATCAACTGAAGAATCAACACCAAGAGCAGCATCAACTTAATCAGATTGAGGATAATAAACTTGAATTGAATGATGAACTGAATGATAAACATCACGTATGTGATATAATTAACTATCCATGCTGGAAAAAAAATGAAAAAGTTGGGAACAATCCCTAA

Protein sequence

MVRMTPKITMVKRIMLVLLLTSSWLFLIDGKRPLLHDQLKNQHQEQHQLNQIEDNKLELNDELNDKHHVCDIINYPCWKKNEKVGNNP

Homology

The following BLAST results are available for this feature:

BLAST of HG10022625.1 vs.


Match Name	E-value	Identity	Description

BLAST of HG10022625.1 vs.


Match Name	E-value	Identity	Description

BLAST of HG10022625.1 vs.


Match Name	E-value	Identity	Description

BLAST of HG10022625.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 42..62

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10022625	HG10022625	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10022625.1-cds	HG10022625.1-cds-Chr05:26398634..26398900	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10022625.1	HG10022625.1-protein	polypeptide