HG10022078.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022078.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S ribosomal protein L34
Location	Chr05: 20546139 .. 20547332 (-)
Sequence length	363
RNA-Seq Expression	HG10022078.1
Synteny	HG10022078.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAGCGACTTACTTACCGTAAGCGCCACAGCTACGCTACCAAATCCAATCAGCACCGTGTTGTCAAAACGCCCGGTACTTTTCTTCCCTCTTCACTATAACTCCAGCGCTTATAATCCCTTCCCCCTTTCCATTTCTTGACCATTCTGTAGTATTTTAGTATCAGTCGCATAATGGGTGTCGTGATGATGCGTTTTAGGTGGAAAGTTGATCTATCAAACCACCAAAAAGAGAGCCAGCGGCCCCAAATGTCCTGTTACTGGGAAGAGAATCCAAGGGGTATGTGTGATTTTATGCCTTTGATCAATGCAAGTGTTGTTTACGTTGATTCAAAGTTCGTTTTTTTTTGGGTGTTTATTATAATTGTCATGTGCATTTGGGGATAACCATTCTTCTTGAAACTGACATTGCGTCATACTGATTGGGGCGGGGGGGGGGGGGGGTTTTCATTTTGTTAATTGTTTGAAAAGTAGAAGTAGCGTGGTTTACAGGTGTTCATTGCCGGCATTTGTGTTTTGTTTAGTTTCTAATTTGGTTCAGAATGTATGAAGTCTATATTTCAAATGCCACATCTCCTTTTCAATACTTGATTTTCTATTGTAACTTTGCGTGTAATGTTCGCTTGATAACAAAATTTAGATGTTTCTTTTTGTTTGTATGTAATACATTATGAGCCAGCTTTGATTAGGAGACGTGTATATGTTGCAAGTATTTAAGCTTAGCGATTGGCTATTGGCTATTGTTAATAAATAGAGATCATGAATATAGGTTGTGTGTATACTCTCAGTCTATAGAACTATACTTGTGAAATTGTAACAATTGGTCGCATTTGAAATTGTAACATACCCTCTCTGTATCTCTTTTATTTTAAATATTTTCTTTGAACAGATTCCGCACTTGAGGCCTGCTGAATACAAGAGATCTAGACTGGCTAGGCACCGCAGAACCGTTAATCGGGCATATGGTGGTGTGTTGTCAGGAAGCGCTGTTAGAGAAAGGTATGTGCTCATTGAATTAACCCTGATACTTTTGGTTTCTTTGGTTCTTTCTACTGTAACCAAGGTAGCCAAGCTTAAGTGCTGGTTCAACATTGCAGGATTATTCGGGCTTTTCTGGTAGAAGAGCAGAAGATTGTGAAAAAGGTATTGAAAATCCAAAAGGCAAAGGAAAAGTTAGCTGCCAAGAGTTAA

mRNA sequence

ATGGTGCAGCGACTTACTTACCGTAAGCGCCACAGCTACGCTACCAAATCCAATCAGCACCGTGTTGTCAAAACGCCCGGTGGAAAGTTGATCTATCAAACCACCAAAAAGAGAGCCAGCGGCCCCAAATGTCCTGTTACTGGGAAGAGAATCCAAGGGATTCCGCACTTGAGGCCTGCTGAATACAAGAGATCTAGACTGGCTAGGCACCGCAGAACCGTTAATCGGGCATATGGTGGTGTGTTGTCAGGAAGCGCTGTTAGAGAAAGGATTATTCGGGCTTTTCTGGTAGAAGAGCAGAAGATTGTGAAAAAGGTATTGAAAATCCAAAAGGCAAAGGAAAAGTTAGCTGCCAAGAGTTAA

Coding sequence (CDS)

ATGGTGCAGCGACTTACTTACCGTAAGCGCCACAGCTACGCTACCAAATCCAATCAGCACCGTGTTGTCAAAACGCCCGGTGGAAAGTTGATCTATCAAACCACCAAAAAGAGAGCCAGCGGCCCCAAATGTCCTGTTACTGGGAAGAGAATCCAAGGGATTCCGCACTTGAGGCCTGCTGAATACAAGAGATCTAGACTGGCTAGGCACCGCAGAACCGTTAATCGGGCATATGGTGGTGTGTTGTCAGGAAGCGCTGTTAGAGAAAGGATTATTCGGGCTTTTCTGGTAGAAGAGCAGAAGATTGTGAAAAAGGTATTGAAAATCCAAAAGGCAAAGGAAAAGTTAGCTGCCAAGAGTTAA

Protein sequence

MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARHRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS

Homology

[Close]

BLAST of HG10022078.1 vs. NCBI nr
Match: XP_038889603.1 (60S ribosomal protein L34 [Benincasa hispida])

HSP 1 Score: 225.3 bits (573), Expect = 2.8e-55
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARHRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLAR+RRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of HG10022078.1 vs. NCBI nr
Match: XP_027098139.1 (60S ribosomal protein L34 [Coffea arabica] >XP_027153728.1 60S ribosomal protein L34 [Coffea eugenioides])

HSP 1 Score: 224.9 bits (572), Expect = 3.6e-55
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARHRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLAR+RRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of HG10022078.1 vs. NCBI nr
Match: XP_022939767.1 (60S ribosomal protein L34 [Cucurbita moschata] >KAG7016140.1 60S ribosomal protein L34 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224.2 bits (570), Expect = 6.1e-55
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARHRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLAR+RRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of HG10022078.1 vs. NCBI nr
Match: XP_022993685.1 (60S ribosomal protein L34 [Cucurbita maxima])

HSP 1 Score: 223.8 bits (569), Expect = 8.0e-55
Identity = 117/120 (97.50%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHR+VKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRIVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARHRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLAR+RRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of HG10022078.1 vs. NCBI nr
Match: XP_023550590.1 (60S ribosomal protein L34 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.8 bits (569), Expect = 8.0e-55
Identity = 117/120 (97.50%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARHRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLAR+RRT+NRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of HG10022078.1 vs. ExPASy Swiss-Prot
Match: P41098 (60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 6.8e-57
Identity = 116/120 (96.67%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARHRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+R+RRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of HG10022078.1 vs. ExPASy Swiss-Prot
Match: P40590 (60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.4e-55
Identity = 111/120 (92.50%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR+RHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARHRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+R+RRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQK KEK AAK+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKN 120

[Close]

BLAST of HG10022078.1 vs. ExPASy Swiss-Prot
Match: Q42351 (60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-54
Identity = 109/120 (90.83%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARHRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+R+RRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]

BLAST of HG10022078.1 vs. ExPASy Swiss-Prot
Match: Q9FE65 (60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 7.1e-54
Identity = 109/119 (91.60%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARHRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAK 120
           EYKRSRL+R+RRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]

BLAST of HG10022078.1 vs. ExPASy Swiss-Prot
Match: Q9LJW6 (60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 6.0e-53
Identity = 108/120 (90.00%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARHRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLAR+ RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]

BLAST of HG10022078.1 vs. ExPASy TrEMBL
Match: A0A6P6V549 (60S ribosomal protein L34 OS=Coffea arabica OX=13443 GN=LOC113717585 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.7e-55
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARHRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLAR+RRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of HG10022078.1 vs. ExPASy TrEMBL
Match: A0A6J1FHR3 (60S ribosomal protein L34 OS=Cucurbita moschata OX=3662 GN=LOC111445551 PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.0e-55
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARHRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLAR+RRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of HG10022078.1 vs. ExPASy TrEMBL
Match: A0A1S3BV34 (60S ribosomal protein L34 OS=Cucumis melo OX=3656 GN=LOC103493989 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 3.9e-55
Identity = 117/120 (97.50%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARHRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLAR+RRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of HG10022078.1 vs. ExPASy TrEMBL
Match: A0A5A7UWQ0 (60S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00210 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 3.9e-55
Identity = 117/120 (97.50%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARHRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLAR+RRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of HG10022078.1 vs. ExPASy TrEMBL
Match: A0A6J1JZ78 (60S ribosomal protein L34 OS=Cucurbita maxima OX=3661 GN=LOC111489604 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 3.9e-55
Identity = 117/120 (97.50%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHR+VKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRIVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARHRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLAR+RRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of HG10022078.1 vs. TAIR 10
Match: AT1G26880.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-55
Identity = 109/120 (90.83%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARHRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+R+RRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]

BLAST of HG10022078.1 vs. TAIR 10
Match: AT1G69620.1 (ribosomal protein L34 )

HSP 1 Score: 211.1 bits (536), Expect = 5.0e-55
Identity = 109/119 (91.60%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARHRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAK 120
           EYKRSRL+R+RRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]

BLAST of HG10022078.1 vs. TAIR 10
Match: AT3G28900.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 208.0 bits (528), Expect = 4.2e-54
Identity = 108/120 (90.00%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARHRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLAR+ RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]

BLAST of HG10022078.1 vs. TAIR 10
Match: AT1G26880.2 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 172.2 bits (435), Expect = 2.6e-43
Identity = 83/92 (90.22%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
          MVQRL YR RHSYATKSNQHR+VKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1  MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61 EYKRSRLARHRRTVNRAYGGVLSGSAVRERII 93
          EYKRSRL+R+RRTVNRAYGGVLSGSAVRER +
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERFV 92

The following BLAST results are available for this feature:

BLAST of HG10022078.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889603.1	2.8e-55	99.17	60S ribosomal protein L34 [Benincasa hispida]	[more]
XP_027098139.1	3.6e-55	98.33	60S ribosomal protein L34 [Coffea arabica] >XP_027153728.1 60S ribosomal protein...	[more]
XP_022939767.1	6.1e-55	98.33	60S ribosomal protein L34 [Cucurbita moschata] >KAG7016140.1 60S ribosomal prote...	[more]
XP_022993685.1	8.0e-55	97.50	60S ribosomal protein L34 [Cucurbita maxima]	[more]
XP_023550590.1	8.0e-55	97.50	60S ribosomal protein L34 [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10022078.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41098	6.8e-57	96.67	60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1	[more]
P40590	6.4e-55	92.50	60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1	[more]
Q42351	1.4e-54	90.83	60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1	[more]
Q9FE65	7.1e-54	91.60	60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1	[more]
Q9LJW6	6.0e-53	90.00	60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1	[more]

BLAST of HG10022078.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P6V549	1.7e-55	98.33	60S ribosomal protein L34 OS=Coffea arabica OX=13443 GN=LOC113717585 PE=3 SV=1	[more]
A0A6J1FHR3	3.0e-55	98.33	60S ribosomal protein L34 OS=Cucurbita moschata OX=3662 GN=LOC111445551 PE=3 SV=...	[more]
A0A1S3BV34	3.9e-55	97.50	60S ribosomal protein L34 OS=Cucumis melo OX=3656 GN=LOC103493989 PE=3 SV=1	[more]
A0A5A7UWQ0	3.9e-55	97.50	60S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1JZ78	3.9e-55	97.50	60S ribosomal protein L34 OS=Cucurbita maxima OX=3661 GN=LOC111489604 PE=3 SV=1	[more]

BLAST of HG10022078.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26880.1	1.0e-55	90.83	Ribosomal protein L34e superfamily protein	[more]
AT1G69620.1	5.0e-55	91.60	ribosomal protein L34	[more]
AT3G28900.1	4.2e-54	90.00	Ribosomal protein L34e superfamily protein	[more]
AT1G26880.2	2.6e-43	90.22	Ribosomal protein L34e superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008195	Ribosomal protein L34Ae	PRINTS	PR01250	RIBOSOMALL34	coord: 26..43 score: 50.4 coord: 13..26 score: 59.18 coord: 44..54 score: 50.0 coord: 66..88 score: 44.1
IPR008195	Ribosomal protein L34Ae	PFAM	PF01199	Ribosomal_L34e	coord: 1..96 e-value: 3.9E-38 score: 129.6
IPR008195	Ribosomal protein L34Ae	PANTHER	PTHR10759	60S RIBOSOMAL PROTEIN L34	coord: 1..120
None	No IPR available	GENE3D	6.20.340.10		coord: 39..120 e-value: 5.5E-36 score: 124.3
None	No IPR available	GENE3D	6.20.370.70		coord: 1..37 e-value: 1.3E-21 score: 78.0
None	No IPR available	PANTHER	PTHR10759:SF14	SUBFAMILY NOT NAMED	coord: 1..120
IPR018065	Ribosomal protein L34e, conserved site	PROSITE	PS01145	RIBOSOMAL_L34E	coord: 15..28

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10022078	HG10022078	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10022078.1-cds	HG10022078.1-cds-Chr05:20546139..20546232	CDS
HG10022078.1-cds	HG10022078.1-cds-Chr05:20546331..20546440	CDS
HG10022078.1-cds	HG10022078.1-cds-Chr05:20547050..20547129	CDS
HG10022078.1-cds	HG10022078.1-cds-Chr05:20547254..20547332	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10022078.1	HG10022078.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome