HG10021851.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021851.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Phosphomethylpyrimidine synthase
Location	Chr05: 17568221 .. 17568508 (-)
Sequence length	288
RNA-Seq Expression	HG10021851.1
Synteny	HG10021851.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTTTATGACTTTATCTTGAAAAGTGGAAAGCAGTCGATATCGTTCCCCTTTACGTTAACTTCCACCAAGAGCAAGGAGAACCCATTGCTCTCCATCTTTTTGCAATTGATCTGTTACTTCCTTTTGTTGGTTCTTACGGTATACCAATATGCAGGACCACTCGTCAAGGAGAAAAGGGTTGGAAGTGCAGGAGACTTATTGTCGATGATTGTCAGACCGGAACAGAAAATCGATACCTGCTTGAGTCTCCAGTTTCAGGCCATGGAAGAGTACAAAGTTTAG

mRNA sequence

ATGGGGTTTTATGACTTTATCTTGAAAAGTGGAAAGCAGTCGATATCGTTCCCCTTTACGTTAACTTCCACCAAGAGCAAGGAGAACCCATTGCTCTCCATCTTTTTGCAATTGATCTGTTACTTCCTTTTGTTGGTTCTTACGGTATACCAATATGCAGGACCACTCGTCAAGGAGAAAAGGGTTGGAAGTGCAGGAGACTTATTGTCGATGATTGTCAGACCGGAACAGAAAATCGATACCTGCTTGAGTCTCCAGTTTCAGGCCATGGAAGAGTACAAAGTTTAG

Coding sequence (CDS)

ATGGGGTTTTATGACTTTATCTTGAAAAGTGGAAAGCAGTCGATATCGTTCCCCTTTACGTTAACTTCCACCAAGAGCAAGGAGAACCCATTGCTCTCCATCTTTTTGCAATTGATCTGTTACTTCCTTTTGTTGGTTCTTACGGTATACCAATATGCAGGACCACTCGTCAAGGAGAAAAGGGTTGGAAGTGCAGGAGACTTATTGTCGATGATTGTCAGACCGGAACAGAAAATCGATACCTGCTTGAGTCTCCAGTTTCAGGCCATGGAAGAGTACAAAGTTTAG

Protein sequence

MGFYDFILKSGKQSISFPFTLTSTKSKENPLLSIFLQLICYFLLLVLTVYQYAGPLVKEKRVGSAGDLLSMIVRPEQKIDTCLSLQFQAMEEYKV

Homology

[Close]

BLAST of HG10021851.1 vs. NCBI nr
Match: KAA0031806.1 (phosphomethylpyrimidine synthase [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-04
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 60  KRVGSAGDLLSMIVRPEQKIDTCLSLQFQAMEE 93
           +R GSAGDL +MI RP+QKIDTCLSLQFQAMEE
Sbjct: 653 ERGGSAGDLSAMIRRPDQKIDTCLSLQFQAMEE 685

[Close]

BLAST of HG10021851.1 vs. NCBI nr
Match: TYJ97327.1 (phosphomethylpyrimidine synthase [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 5.1e-04
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 60  KRVGSAGDLLSMIVRPEQKIDTCLSLQFQAMEE 93
           +R G+AGDL +MI RP+QKIDTCLSLQFQAMEE
Sbjct: 653 ERGGNAGDLSAMIRRPDQKIDTCLSLQFQAMEE 685

[Close]

BLAST of HG10021851.1 vs. ExPASy TrEMBL
Match: A0A5A7SPA0 (Phosphomethylpyrimidine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00490 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 60  KRVGSAGDLLSMIVRPEQKIDTCLSLQFQAMEE 93
           +R GSAGDL +MI RP+QKIDTCLSLQFQAMEE
Sbjct: 653 ERGGSAGDLSAMIRRPDQKIDTCLSLQFQAMEE 685

[Close]

BLAST of HG10021851.1 vs. ExPASy TrEMBL
Match: A0A5D3BDX2 (Phosphomethylpyrimidine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001330 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.5e-04
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 60  KRVGSAGDLLSMIVRPEQKIDTCLSLQFQAMEE 93
           +R G+AGDL +MI RP+QKIDTCLSLQFQAMEE
Sbjct: 653 ERGGNAGDLSAMIRRPDQKIDTCLSLQFQAMEE 685

The following BLAST results are available for this feature:

BLAST of HG10021851.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031806.1	2.3e-04	81.82	phosphomethylpyrimidine synthase [Cucumis melo var. makuwa]	[more]
TYJ97327.1	5.1e-04	78.79	phosphomethylpyrimidine synthase [Cucumis melo var. makuwa]	[more]

BLAST of HG10021851.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10021851.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SPA0	1.1e-04	81.82	Phosphomethylpyrimidine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3BDX2	2.5e-04	78.79	Phosphomethylpyrimidine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of HG10021851.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10021851	HG10021851	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10021851.1-cds	HG10021851.1-cds-Chr05:17568221..17568508	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10021851.1	HG10021851.1-protein	polypeptide