HG10018595.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10018595.1
TypemRNA
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr04: 5622106 .. 5622932 (+)
Sequence length762
RNA-Seq ExpressionHG10018595.1
SyntenyHG10018595.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCTGGGTCTAAAAAAACTTTGCCCCAATTTTTATCATCTTGATGATGAAGAAAATGAAAAGCACTCACCATTCCCAAGCAAAGGTACTTTACAGAAATACCAGCGGACATCACCACCATCGGAAGGACTCCTCGTCTGTGCAAGATACTTCTGCCTACCTTCGCAGTGCTCGATCACATCCTCCAATTTTGCAATGTTAGATGGCGTGTTTTTTAGTGAATCAGGGGACGCTTCTGGAACTTCAACAGAACCTATAGCTGCCGAAATCAACATGTCATCGCCACCCATATCTTTCGAACTATTTACATCCATTCCGCCGTCTGATAGAATAACTTTTGCCTCGGAACCTATCACTAAGAAAGAGGTTCCGAAGCAATTACAGGGCAGGTTAGCTCAGAAGATTGAGGAAGTTTTCTTCCGTCAAGAAAATCCTTCGACAACCCAGAAACACAACCACATAACGTAACAATTAAGAAGACCAAACACAGAAGGCACCTAATTGAAGTACCACACACGCCTTCCTGCAGAGCAATTTGGAATTGCGAAACGGAGTTTGGCTGGTGTGGTTTAAGAGCTTCGCTTCATCAAACACAATGTAGAAAGGCTGGAATGAGACCACGTCCAGTTCCAGATGGCTCCTGGCGAATACGGGAATCAATAGCCATTGAGATCATTGCAGTGCATGTTCGATCCAAGGGAATCGCGGAGAGAGCTTCGGTGGGGAGAAGGATGGCGGTGGGCTATGGCGGTGACTTCTGGTGCGGTTTTAGACAGGCGGTGACGACAGACGCAACGGCAGCGGTGCGGTGGTTAAAAAATTGA

mRNA sequence

ATGATCCTGGGTCTAAAAAAACTTTGCCCCAATTTTTATCATCTTGATGATGAAGAAAATGAAAAGCACTCACCATTCCCAAGCAAAGGTACTTTACAGAAATACCAGCGGACATCACCACCATCGGAAGGACTCCTCGTCTGTGCAAGATACTTCTGCCTACCTTCGCAGTGCTCGATCACATCCTCCAATTTTGCAATGTTAGATGGCGTGTTTTTTAGTGAATCAGGGGACGCTTCTGGAACTTCAACAGAACCTATAGCTGCCGAAATCAACATGTCATCGCCACCCATATCTTTCGAACTATTTACATCCATTCCGCCGTCTGATAGAATAACTTTTGCCTCGGAACCTATCACTAAGAAAGAGGTTCCGAAGCAATTACAGGGCAGGTTAGCTCAGAAGATTGAGGAAGTTTTCTTCCGTCAAGAAAATCCTTCGACAACCCAGAAACACAACCACATAACAGCAATTTGGAATTGCGAAACGGAGTTTGGCTGGTGTGGTTTAAGAGCTTCGCTTCATCAAACACAATGTAGAAAGGCTGGAATGAGACCACGTCCAGTTCCAGATGGCTCCTGGCGAATACGGGAATCAATAGCCATTGAGATCATTGCAGTGCATGTTCGATCCAAGGGAATCGCGGAGAGAGCTTCGGTGGGGAGAAGGATGGCGGTGGGCTATGGCGGTGACTTCTGGTGCGGTTTTAGACAGGCGGTGACGACAGACGCAACGGCAGCGGTGCGGTGGTTAAAAAATTGA

Coding sequence (CDS)

ATGATCCTGGGTCTAAAAAAACTTTGCCCCAATTTTTATCATCTTGATGATGAAGAAAATGAAAAGCACTCACCATTCCCAAGCAAAGGTACTTTACAGAAATACCAGCGGACATCACCACCATCGGAAGGACTCCTCGTCTGTGCAAGATACTTCTGCCTACCTTCGCAGTGCTCGATCACATCCTCCAATTTTGCAATGTTAGATGGCGTGTTTTTTAGTGAATCAGGGGACGCTTCTGGAACTTCAACAGAACCTATAGCTGCCGAAATCAACATGTCATCGCCACCCATATCTTTCGAACTATTTACATCCATTCCGCCGTCTGATAGAATAACTTTTGCCTCGGAACCTATCACTAAGAAAGAGGTTCCGAAGCAATTACAGGGCAGGTTAGCTCAGAAGATTGAGGAAGTTTTCTTCCGTCAAGAAAATCCTTCGACAACCCAGAAACACAACCACATAACAGCAATTTGGAATTGCGAAACGGAGTTTGGCTGGTGTGGTTTAAGAGCTTCGCTTCATCAAACACAATGTAGAAAGGCTGGAATGAGACCACGTCCAGTTCCAGATGGCTCCTGGCGAATACGGGAATCAATAGCCATTGAGATCATTGCAGTGCATGTTCGATCCAAGGGAATCGCGGAGAGAGCTTCGGTGGGGAGAAGGATGGCGGTGGGCTATGGCGGTGACTTCTGGTGCGGTTTTAGACAGGCGGTGACGACAGACGCAACGGCAGCGGTGCGGTGGTTAAAAAATTGA

Protein sequence

MILGLKKLCPNFYHLDDEENEKHSPFPSKGTLQKYQRTSPPSEGLLVCARYFCLPSQCSITSSNFAMLDGVFFSESGDASGTSTEPIAAEINMSSPPISFELFTSIPPSDRITFASEPITKKEVPKQLQGRLAQKIEEVFFRQENPSTTQKHNHITAIWNCETEFGWCGLRASLHQTQCRKAGMRPRPVPDGSWRIRESIAIEIIAVHVRSKGIAERASVGRRMAVGYGGDFWCGFRQAVTTDATAAVRWLKN
Homology
[Close]
BLAST of HG10018595.1 vs. NCBI nr
Match: KAG7033418.1 (hypothetical protein SDJN02_07474, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 198.4 bits (503), Expect = 7.6e-47
Identity = 101/122 (82.79%), Postives = 108/122 (88.52%), Query Frame = 0 

Query: 15  LDDEENEKHSPFPSKGTLQKYQRTSPPSEGLLVCARYFCLPSQCSITSSNFAMLDGVFFS 74
           + DE+NEK SPFPSKGTLQKYQRTSPPSEGLLVCARY CLPSQCS+TSSNFAML+GVFFS
Sbjct: 117 IKDEKNEKRSPFPSKGTLQKYQRTSPPSEGLLVCARYLCLPSQCSMTSSNFAMLEGVFFS 176

Query: 75  ESGDASGTSTEPIAAEINMSSPPISFELFTSIPPSDRITFASEPITKKEVPKQLQGRLAQ 134
           ESGDAS TS EPIAA+ NMS P ISFELFTS+   DRI FASEPITKKE PKQLQ RLAQ
Sbjct: 177 ESGDASETSEEPIAAKDNMSPPTISFELFTSLLAPDRIIFASEPITKKEAPKQLQDRLAQ 236

Query: 135 KI 137
           +I
Sbjct: 237 RI 238

[Close]
BLAST of HG10018595.1 vs. ExPASy TrEMBL
Match: A0A2P2MMV8 (Uncharacterized protein MANES_S009500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.5e-08
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 39 SPPSEGLLVCARYFCLPSQCSITSSNFAMLDGVFFSESGDAS----GTSTE 86
          SPPS+GLLVCARYF  P  CSITSSN AML GVFFS+SGD S    G STE
Sbjct: 2  SPPSDGLLVCARYFWRPLLCSITSSNLAMLVGVFFSKSGDVSSAMDGFSTE 52

The following BLAST results are available for this feature:
BLAST of HG10018595.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033418.17.6e-4782.79hypothetical protein SDJN02_07474, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of HG10018595.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10018595.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P2MMV87.5e-0872.55Uncharacterized protein MANES_S009500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
BLAST of HG10018595.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
HG10018595HG10018595gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
HG10018595.1-cdsHG10018595.1-cds-Chr04:5622106..5622572CDS
HG10018595.1-cdsHG10018595.1-cds-Chr04:5622638..5622932CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
HG10018595.1HG10018595.1-proteinpolypeptide