HG10013487.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013487.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Signal peptidase complex-like protein DTM1
Location	Chr02: 1969676 .. 1970640 (+)
Sequence length	333
RNA-Seq Expression	HG10013487.1
Synteny	HG10013487.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAACGACGCCGCCCTCAACTCCTCTCTGGTTTTCTTGACCGCCGCCGTCGTTCTCGTCGGGATTACCACGTGGTCCTTCAAGAAGATGGCCGTAACTTATTTCGTCGGCGTTTTCGCCATCGCCGGCGTCCTCTTGCCGGATTGGTGCTTCTTTGACCGCGATTTCTCTCGGTGGACTTCTCCGGTCACCGAAGAGGAAAGGGAATTGTATCGGATCTCGACTGCATCTCGGTTTCGAAGGTCCGTTTTAATTTCTTGTGCTCTTTTTTCTTCTTTGATTGATGAAAAATTGTGCGAGAAAATTAGGTTCAGTATTTTTGCAGCCTTACGAAAATTAATTTCGAGTTTCAAGGAGCACTCTCCCGGACAGAATAAATTACCTCTTGTGGAATAAATCGAACTTTAACAAATTTATAAAATGGAAAAATAATTATGAAAAAGAAAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAGAAGAAGAGAAGAGAAACATCATATTTATATGCTATGCTAATTCAACTAATTCAAGGTCATCTTAACAATCATTTTTTTTTTTCAATTTAGTTATTTGTGAAGAGTTAGCATTCATTCTTAGGAAAAAAACATGTAACTTATAAAATTGAAAGAATACAACTCTTAATAAAGAGTCCCATTTTATTTATTCCAACACTTTTTACTCTAAAATTTGAAAACTAAAAAAAAATAGTTATAAAGTGCAAACAATTATAAGAAATTCTGAAAAAATAAGCTTATTTTTTTTCTTAAAAAAACAATATGGTTACCAATAGATTACGTGGATTTTTAACTTCATTTTTGTTTCTTAATCTGAGTTTTCGAGATTTTGGAATTTTTTTGCAGGTTTAGGATTTATCCAATCAGATTAGTTGTGTACGCCACAGTTTACAGTATTGCCCTGTACAAGTGGTGGCAATACGTGTCCAGCTAA

mRNA sequence

ATGGCCAACGACGCCGCCCTCAACTCCTCTCTGGTTTTCTTGACCGCCGCCGTCGTTCTCGTCGGGATTACCACGTGGTCCTTCAAGAAGATGGCCGTAACTTATTTCGTCGGCGTTTTCGCCATCGCCGGCGTCCTCTTGCCGGATTGGTGCTTCTTTGACCGCGATTTCTCTCGGTGGACTTCTCCGGTCACCGAAGAGGAAAGGGAATTGTATCGGATCTCGACTGCATCTCGGTTTCGAAGGTTTAGGATTTATCCAATCAGATTAGTTGTGTACGCCACAGTTTACAGTATTGCCCTGTACAAGTGGTGGCAATACGTGTCCAGCTAA

Coding sequence (CDS)

ATGGCCAACGACGCCGCCCTCAACTCCTCTCTGGTTTTCTTGACCGCCGCCGTCGTTCTCGTCGGGATTACCACGTGGTCCTTCAAGAAGATGGCCGTAACTTATTTCGTCGGCGTTTTCGCCATCGCCGGCGTCCTCTTGCCGGATTGGTGCTTCTTTGACCGCGATTTCTCTCGGTGGACTTCTCCGGTCACCGAAGAGGAAAGGGAATTGTATCGGATCTCGACTGCATCTCGGTTTCGAAGGTTTAGGATTTATCCAATCAGATTAGTTGTGTACGCCACAGTTTACAGTATTGCCCTGTACAAGTGGTGGCAATACGTGTCCAGCTAA

Protein sequence

MANDAALNSSLVFLTAAVVLVGITTWSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRWTSPVTEEERELYRISTASRFRRFRIYPIRLVVYATVYSIALYKWWQYVSS

Homology

[Close]

BLAST of HG10013487.1 vs. NCBI nr
Match: XP_038899258.1 (signal peptidase complex-like protein DTM1 [Benincasa hispida])

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-48
Identity = 101/110 (91.82%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 1   MANDAALNSSLVFLTAAVVLVGITTWSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAALNSSLVFL A VVLVGITT+SFKKM VTYFVG FAIAGVLLPDWCFFDRDFSRW
Sbjct: 1   MANDAALNSSLVFLAAVVVLVGITTYSFKKMVVTYFVGAFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERELYRISTASRFRRFRIYPIRLVVYATVYSIALYKWWQYVSS 111
           TSPVTEEERE YRIST SRFRRFRIYPIRLVVY TVYS+ALYKWWQYVSS
Sbjct: 61  TSPVTEEERESYRISTGSRFRRFRIYPIRLVVYGTVYSVALYKWWQYVSS 110

[Close]

BLAST of HG10013487.1 vs. NCBI nr
Match: XP_008466235.1 (PREDICTED: uncharacterized protein LOC103503709 [Cucumis melo] >KAA0038711.1 signal peptidase complex-like protein DTM1 [Cucumis melo var. makuwa] >TYK31323.1 signal peptidase complex-like protein DTM1 [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 4.5e-44
Identity = 92/110 (83.64%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MANDAALNSSLVFLTAAVVLVGITTWSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAALNSSLV L  A+VLVGITT+SFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW
Sbjct: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERELYRISTASRFRRFRIYPIRLVVYATVYSIALYKWWQYVSS 111
           TSPVTEEERE YR +T S+ +RFRIYP+R++VY  VYSIALYKWWQYV+S
Sbjct: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 110

[Close]

BLAST of HG10013487.1 vs. NCBI nr
Match: KAG7037595.1 (Signal peptidase complex-like protein DTM1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.7 bits (465), Expect = 8.4e-43
Identity = 93/110 (84.55%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 1   MANDAALNSSLVFLTAAVVLVGITTWSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MA DAAL SSLVFL AAVVLVGI+T SFKKMAVTY VGVFAIAG+LLPDWCFFDRDFSRW
Sbjct: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERELYRISTASRFRRFRIYPIRLVVYATVYSIALYKWWQYVSS 111
            SPVTEEERE YRISTASR  RFRIYPIRL VYA VYS+ALYKWW++VS+
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110

[Close]

BLAST of HG10013487.1 vs. NCBI nr
Match: XP_022940831.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 93/110 (84.55%), Postives = 100/110 (90.91%), Query Frame = 0


Query: 1   MANDAALNSSLVFLTAAVVLVGITTWSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MA DAAL SSLVFL AAVVLVGI+T SFKKMAVTY VGVFAIAG+LLPDWCFFDR+FSRW
Sbjct: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60

Query: 61  TSPVTEEERELYRISTASRFRRFRIYPIRLVVYATVYSIALYKWWQYVSS 111
            SPVTEEERE YRISTASR  RFRIYPIRLVVYA VYS+ALYKWW++VS+
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST 110

[Close]

BLAST of HG10013487.1 vs. NCBI nr
Match: XP_022981833.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 183.0 bits (463), Expect = 1.4e-42
Identity = 93/110 (84.55%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 1   MANDAALNSSLVFLTAAVVLVGITTWSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MA DAAL SSLVFL A VVLVGI+T SFKKMAVTY VGVFAIAG+LLPDWCFFDRDFSRW
Sbjct: 1   MAEDAALKSSLVFLAATVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERELYRISTASRFRRFRIYPIRLVVYATVYSIALYKWWQYVSS 111
            SPVTEEERE YRISTASR  RFRIYPIRL VYATVYS ALYKWW++VS+
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYATVYSAALYKWWKFVST 110

[Close]

BLAST of HG10013487.1 vs. ExPASy Swiss-Prot
Match: Q7XI45 (Signal peptidase complex-like protein DTM1 OS=Oryza sativa subsp. japonica OX=39947 GN=DTM1 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-21
Identity = 53/112 (47.32%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 1   MANDAALNSSLVFLTAAVVLVGITTWSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           M  D  L  SLV L AAVV+ G+ T S +K A TY  G+ AIAGVLLPDW FFDRD+S+W
Sbjct: 1   MGRDEMLRRSLVALAAAVVVTGVVTASVRKAAATYGFGILAIAGVLLPDWEFFDRDYSQW 60

Query: 61  TSPVTEEERELYRISTASRFR--RFRIYPIRLVVYATVYSIALYKWWQYVSS 111
            +P+    R     +        +F+ YP+R+ +  T+Y   LYKWW YVSS
Sbjct: 61  LTPMPASRRTAAEAAADREHDVWKFKPYPLRMAMLTTIYGFGLYKWWMYVSS 112

[Close]

BLAST of HG10013487.1 vs. ExPASy TrEMBL
Match: A0A5A7TAS9 (Signal peptidase complex-like protein DTM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006230 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.2e-44
Identity = 92/110 (83.64%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MANDAALNSSLVFLTAAVVLVGITTWSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAALNSSLV L  A+VLVGITT+SFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW
Sbjct: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERELYRISTASRFRRFRIYPIRLVVYATVYSIALYKWWQYVSS 111
           TSPVTEEERE YR +T S+ +RFRIYP+R++VY  VYSIALYKWWQYV+S
Sbjct: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 110

[Close]

BLAST of HG10013487.1 vs. ExPASy TrEMBL
Match: A0A1S3CQR6 (uncharacterized protein LOC103503709 OS=Cucumis melo OX=3656 GN=LOC103503709 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.2e-44
Identity = 92/110 (83.64%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MANDAALNSSLVFLTAAVVLVGITTWSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAALNSSLV L  A+VLVGITT+SFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW
Sbjct: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERELYRISTASRFRRFRIYPIRLVVYATVYSIALYKWWQYVSS 111
           TSPVTEEERE YR +T S+ +RFRIYP+R++VY  VYSIALYKWWQYV+S
Sbjct: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 110

[Close]

BLAST of HG10013487.1 vs. ExPASy TrEMBL
Match: A0A6J1FJI2 (signal peptidase complex-like protein DTM1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446307 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.3e-43
Identity = 93/110 (84.55%), Postives = 100/110 (90.91%), Query Frame = 0


Query: 1   MANDAALNSSLVFLTAAVVLVGITTWSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MA DAAL SSLVFL AAVVLVGI+T SFKKMAVTY VGVFAIAG+LLPDWCFFDR+FSRW
Sbjct: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60

Query: 61  TSPVTEEERELYRISTASRFRRFRIYPIRLVVYATVYSIALYKWWQYVSS 111
            SPVTEEERE YRISTASR  RFRIYPIRLVVYA VYS+ALYKWW++VS+
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST 110

[Close]

BLAST of HG10013487.1 vs. ExPASy TrEMBL
Match: A0A6J1J358 (signal peptidase complex-like protein DTM1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480862 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 7.0e-43
Identity = 93/110 (84.55%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 1   MANDAALNSSLVFLTAAVVLVGITTWSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MA DAAL SSLVFL A VVLVGI+T SFKKMAVTY VGVFAIAG+LLPDWCFFDRDFSRW
Sbjct: 1   MAEDAALKSSLVFLAATVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERELYRISTASRFRRFRIYPIRLVVYATVYSIALYKWWQYVSS 111
            SPVTEEERE YRISTASR  RFRIYPIRL VYATVYS ALYKWW++VS+
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYATVYSAALYKWWKFVST 110

[Close]

BLAST of HG10013487.1 vs. ExPASy TrEMBL
Match: A0A0A0LGU6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889170 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.6e-42
Identity = 89/110 (80.91%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 1   MANDAALNSSLVFLTAAVVLVGITTWSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAALNSSLV L  AV+LVGI+T+SFKKMAVTYFVGVFAIAGVLLPDWCFF RDFSRW
Sbjct: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFGRDFSRW 60

Query: 61  TSPVTEEERELYRISTASRFRRFRIYPIRLVVYATVYSIALYKWWQYVSS 111
           TSPVTEEERE YR +T S  +RFRIYP+RL+VY  VYS ALYKWWQYV++
Sbjct: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 110

[Close]

BLAST of HG10013487.1 vs. TAIR 10
Match: AT1G34640.1 (peptidases )

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-26
Identity = 59/110 (53.64%), Postives = 76/110 (69.09%), Query Frame = 0


Query: 1   MANDAALNSSLVFLTAAVVLVGITTWSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           M N+AAL SS+V L   +V+V + T S KK  VTY VG+  I G+LLPDW FFDR FSRW
Sbjct: 1   MGNEAALRSSMVGLAVVMVVVWLWTQSLKKTVVTYAVGISLIGGILLPDWDFFDRSFSRW 60

Query: 61  TSPVTEEERELYRISTASRFRRFRIYPIRLVVYATVYSIALYKWWQYVSS 111
             PVT EER    ++  S   RFR+YP+R+V+Y TVY  A+Y+WW +VS+
Sbjct: 61  GYPVTAEERSA-ALARKSHPSRFRVYPMRMVLYGTVYGYAVYRWWMFVSN 109

The following BLAST results are available for this feature:

BLAST of HG10013487.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899258.1	1.3e-48	91.82	signal peptidase complex-like protein DTM1 [Benincasa hispida]	[more]
XP_008466235.1	4.5e-44	83.64	PREDICTED: uncharacterized protein LOC103503709 [Cucumis melo] >KAA0038711.1 sig...	[more]
KAG7037595.1	8.4e-43	84.55	Signal peptidase complex-like protein DTM1 [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022940831.1	1.1e-42	84.55	signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita moschata]	[more]
XP_022981833.1	1.4e-42	84.55	signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita maxima]	[more]

BLAST of HG10013487.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XI45	2.5e-21	47.32	Signal peptidase complex-like protein DTM1 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of HG10013487.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TAS9	2.2e-44	83.64	Signal peptidase complex-like protein DTM1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3CQR6	2.2e-44	83.64	uncharacterized protein LOC103503709 OS=Cucumis melo OX=3656 GN=LOC103503709 PE=...	[more]
A0A6J1FJI2	5.3e-43	84.55	signal peptidase complex-like protein DTM1 isoform X1 OS=Cucurbita moschata OX=3...	[more]
A0A6J1J358	7.0e-43	84.55	signal peptidase complex-like protein DTM1 isoform X1 OS=Cucurbita maxima OX=366...	[more]
A0A0A0LGU6	2.6e-42	80.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889170 PE=3 SV=1	[more]

BLAST of HG10013487.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34640.1	1.5e-26	53.64	peptidases	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009542	Signal peptidase complex subunit Spc1/SPCS1	PFAM	PF06645	SPC12	coord: 9..63 e-value: 1.5E-6 score: 28.2
IPR039955	Signal peptidase complex-like protein DTM1	PANTHER	PTHR38354	SIGNAL PEPTIDASE COMPLEX-LIKE PROTEIN DTM1	coord: 1..110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10013487	HG10013487	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10013487.1-cds	HG10013487.1-cds-Chr02:1969676..1969920	CDS
HG10013487.1-cds	HG10013487.1-cds-Chr02:1970553..1970640	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10013487.1	HG10013487.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048658	anther wall tapetum development
biological_process	GO:0006465	signal peptide processing
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005787	signal peptidase complex