HG10012105.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10012105.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein FAM98A-like isoform X1
Location	Chr01: 17751436 .. 17757919 (+)
Sequence length	621
RNA-Seq Expression	HG10012105.1
Synteny	HG10012105.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGGTACCAGAAGGTCGAGAAACCTAAACCTGAATCTCCGATAAACGAAAATGAAATCCGCATCACCAGTCAAGGCGCTATTCGTAACTACATCACTTATGCTTCCACCCTGCTTCAGGTATCATTCCAATGCTTCTTTTATCGTTTTCATTACCCATTGTATCTCATTTCATTTTTTCTTGTTGGTATTCTGTGATATTTTGTTTCATGCTGAATCTGTCTTATGAGGTTAGGTTTTGTGCTGTTTGGATTGTGGATGCACTAGACGCATTTGAAGATTGTCTACGTTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAATGTTAGCCGACATTTATTTATTTGCTACATTTTCTGGTATATTGATTTTATTTCTTATACTTGTGACTTTTGAGGAATAGTTGCTCGCTGGCTGATGCTTTGCCGTATATGCATTGTATGTGGAAGTGTCTGTAAGTTTAATGCACGAGCTATGGTACTTCTTAACGTGCGATAGCTCGTGAAATGTCGACTGTTCTGTTGATTATCTACAGTACATATAGTTTTTTTCTTCTTCTAGCCTATCGTGAATTAGTAGCTACTTCATTTTTCTTCACTTTACCTTATGAAAAGAATAAAGATACGGTTGGATTTATGGTTTATAGTTTATACTGTATTCTCAGATCGAGTAATTACGCTAAGGCAGTGATCATGTGGAGCTTGGTGTTTCTATATTATCTTGACGTGATTTTTGGCTCAGGTTTCTACTATTTGTATAAATTTTTTAATATATAAATTTACCATCAAGATATAGCTACGTAGTTCTCTTTATTATAAAAAGAATCATATGCACTAAAGCTTATGTTTCACAATGTGTTACCAAATCGATTAAGTATGCTAATATAGCGATCATGTTAAAATGGTCATTTCTTTACTTTTGGCTAATGGGTTTCTTCAATTTGTTTAGTACTATTTTTTTTTTCTTTGAAGAAGTTAATTATCGATGTTATTCAAGGGATCAAGTTTAGTGTCCTATATTTATAAATTCAATTAGCAGATGGGTTCTTCTCAATATTGGCCAACCTGAGCGTAGCGCACGTAGTCGAGGCACTGTACCCTCTACCATAAGTCCTGAAATTTGAATCTGCACTCTACACACCGTTGAAAATTTCAAATCATGATCTGCTTGGATTGCAAAAGTTAGGAATACTTAATCTTGGCCCCATTGAACGATTGTGGACAATTTCATTATACCTGGAGCAACAGGAAACTTCTTTTTCTTAAGTTAGCATATAGTTCCTGAGAGTTTATATTCTTTGGTATAATGTGTCAGTTTTGTCATCCGCTTTTGTGATTGTTCATTTTGCTCCATTGTTTCACTACTTAAGTTGAAACCCTGGGTCTCCCAGTCTGGTCGTTCTGAAAGTTAGGTTCTGTGATGAATTCTTGTGCAGCAGTTATTTTTTTCTGTTTGAGGGCTCTATATGATACCAAATCCTCTAAAGACATCAGAATAAAATAAATGAATGTGGTTTTGAAATAATATATGTTTATAAATTAATTTTGACTTCTGGGAATTGAGTCCTTCGGAGAGTAGCTTTGAGCTTTAGAAAATTGTATGAAGTTTCTTTTCTCTGTTTTTGAAAACCTGACCTATTTCCTACCTCACTACAAGGGTGAGCAAAGTTTTGTTCGTTTGGTTTTTAGGCTGAACCTAATCCTTACAAACTCAATTGTGTGTACCCAAGGAATCAAGGATTTTTTTTAACAAACGTTAATCCATGTTCAAACAATGTCCTGCACTATTCTTCTCTAGGATTAGTGTTTAATAGGTTTTGAGATTGAGGATTTGTCTCTATATTTATCATGCTATTTACTTGATCAACCATTTGTTTGGGGAGAAGGGATTCCAGATCTTGGCTTTTGAAGCCCTCTTAGGGATTTTCCAGCAGTTCTTTTTTTGGGATTCTTTGTGCCCCTTCTCCATCCTGGGGATCCTCTAGGTTTTCCTCTCTTTTGAAGGTCAAAACTAGGAAAATGAGATTTTTTGCCCTTAAAGTTTTACACTAGAGAGTGAATACCCAAGATCAAATCTGAGGTTCTTGCAGCCTTAATGGTGTGTCATTTACAGGAGACAGGAAGAGGATCTTGACCATTTATTTTGGGATTGTGATCTTGCTACCTCTCTTTGGAACAGGTTCTTTTGGATCTTTGGGTTTATGCTTGCTTATAATAGAGGTTGTTGTTTGATGTTTGAGGAGGTGTTCTTGAATCCTCATTTTTGTGTCAAAGGAAAGATTCTTTAGCAGTCTTATTCTTTTTGCTATATTGTTGGGCATTTGGCTTGAGAGGAATATTTTTTGTGGGGAGTGTCTGGGGAGGACTTTTGAGTTGCACTTTGTGTTAATGATAGTTACGTGTTACGTTTCTATTTGTTTGAAAACCAAAAGTTGGAAGACTGGTTTGGATCATTCTCTATATTTGGTTTTTGTGATTTCAAAACTGCAAAATAAAAATTTATGATCTTTCATTTAACATAGTCACCAATAGAAAAAATATGGAAAGAAAACTAGAGAAAGTGAGTTGCTTAGACATGGTTTTACCAGCAATAGAAAGTGTATTACAGAGAGTATATAATAAATGCACTGTTACTCGGAAACTCATATAGAGAGACAGTTACTTGCAGACTTTTTTCTGAAGATATAGCAGACATTGAAAATATTTTTTAAAAACCATACTTGAACATGAATTGATATCAGACCAGTATGATTTTGAAAAGGAAAAGAAAAAGAACAGAAAAGAAAAGAAAATGTATCCAATCAGCTAGTTCAATTTTGACTAGATTAATTTTAGGTGTTAGCTAGCTTTTGATCCCCCTTGGTATCTTTGCCGTTTAAACATGGACCTAGATATACAAGTCCAATGCTTTTTTTCCCTTGTTTATTCATATGTTTCTAAGCATGTGCTTACTGTCGGCTGAGAATGAATCTTTTGTAATTTGGTTTAATATATCACGTTCTCACTTTTAATCCAGGACAAACGTGTTAGGGAGATAGTGTTGAAAGCCATGGGGCAGGCAATCAGTAAAGCGGTTGCCATTGCAGAAATTTTAAAGGTTTGAGTAATTTACATTCTGCAACTGTGCATATGTCACTAATTTTATAATTAACAGGCCAGTTTCATTCTGAAACAGAAGAGAACTCCACGATTGCATCAAGAAACTTCCATCAGCTCAGTAAGCATAACTGATGTATGGGAACCTATTGAAGAAGGTCTTGTACCGTAAGTTTTTAGTCTCTAGAATTATTCTCTGTTAATTGCCCGATGAAGACTTATGTACTTACTGCTGGTTGGTTGCTCTATGTGTGGGTTGGTACTCTTTTGTTTGCAATTGCAGATTTGCTTACTGTTTCTGCTGTGGATATGTAGCTTTAGCATACTCTTTTGCAAATGTTTAAGAATTAACTTCTGACCTATGATGCAGTGTGGAGATGACTCGTCATGTCTCAATGATATCAATTACCTTGTCAAATCGAGAACTAAATAAAAACTCTCCTGGGTAAGAAAAATTGGAAACTATAGCCGTAGGATGTGAAAATCTAATCCTTCATGTGCTGCTTTCCATTTTTTACACCCAAGTTTCTTATTATGAATGTTTTAGAATGATTTTTTTTTAATTGTCTGTAGGTATCAAGCTCCACAATTCGTGGAGCAGCCAAAGCAACAATATAATCAGCAGCAACAGCCCAGACAGTCTCGTCCTTATTACAATGCTGTTAATGAAGGTGGTCCTTTTATCTGAAATATAATATACTATTATTTTGAGAAGTTATATAGAATGTGATACTTCCACCCTATTTTATAGTGCAGCAACTTATACATAAAAAAAAACATAAATACAGAATCAGGAATATTAAGAATCCTTGGGATTAGTGGTGTTTGGGTTCACCTAAAATAATCTGAACCAACCCGAGCTTATTATTAATTTTGAAAAGTATATATTTTTTTTACTTATGATATAATAATATATACATATTTTTATTTTATTTTATTTCATGATTTTTTTTGGATAATCTATTATCTAACACCTGCTAAAAGTAAATTTTAGAACTTTGGAAAGAAAATTTTCATAATATAAATTGAAATTGAGTTGCTAATCTTAATTAAATATATGAAAATAATTAAATAAAATTTTTATATATTAACGTTTTACTTATTTTTAGAATAAAATTTTAAATAAATAACCCGAGTAACCTAAACCAACCTAATTCAAAAGTTTCATGGTTGGGTTCATTATTTAATAAGAGTTATTTGGATTGAAAAATCTTACAACCCGAACAATTGGGTTGGGTCTAAAAAGTGCTTCAACCCAACCCAACCCACGAATACCTTTACTTGGGATTTACATTACCTTTAGGAATGACAATGGGGCGGGGTGGGGCGGGCGATACACTCCTCATCGCTATCCCTGCGGGGATTTTCCCATTCCCTCTCCCACCCCATTCCCCTTTTTTAGGTCTCCACTTGGAAAATCTCCAATTTTCATTTTTTTAATTTTTTTTATTAAATCTTAATAACTTTTTAAATAAACATATTAATTTTTTTTATAAATATATTGAAGTTGTATATACTTTTATATTAGGGTTGTTTTCAAATATAGAAAAATGAACCAAACTATTTACAAATATTGAAAAATTTCACTGTCTATTAGTGATGGACTTCTATCGCTCGGTCTACGCTGGTTGATGATGAAATTTTCCTATATTTGTAAATAATTTGATATTTTTTCTATTTATAATAATTTTCCTTTATATTAAAGTATTATTGTTGTTTTATTTATTTAAAAAACATCCAACACTTTTGAATTAGGGAAATTTTCACACATGAAAAAAATGTCAAACTATTTACAGAAAATATAAAAAAAAAATACGGATAGACATTGATAGACTTCTATCATTTCTATCACTGATAGTCTCTGAAAGACTTCTATCAACGTCTATCACAACTATCAAAAAATTTTGTTATTTTGTATAAATAGTTTTCCTTATTTTTCTATTTTTAAAAATTCTCCTTTTAATTATAATTTTTAATACAAAAAGTTATTATATTATTCGGAAATTAAATTAAAAGGAGATATATATATATATACACACACATATATTTTAAAGAATAATAAAAAGTAGTTTAGGCCAGGTTCAGGGTCGGGGACAAGGTGGAGATCCCCTCCCTATCCTGTCCCCCAATCGGGACCCCGAATTAAATCTCCAGTTTGACTCCCTTTCCAGGTCAAATTGGGGGTTCCCCGACCCTGTGAGAAATTTTGCCTTTCCTAGTTACATCATTCCGTAAGTAAAGAAACCAAAGATTAATATTTGAAGTCTTTTGAATCTGTGCTAAACAAATGCTTTTAGTATCCTATTGCCAATGTCCCTAAGCTCTAACTCTTAAGGCGGTGGACCCAGGTCCTAGATGTTGGTTGTGGGTTTGAGATACTGGTTGGGAATCTAAAAGAAAGGAATCACTTGATGTTAATGGAGACTAACATAGTTTCAGATAAGCACAAACCACAAAGATTTTCCCCTCAGAGATTGGTAGCACCACCCAATTAATCTTAATCAAGTGCGGAGGTCACAGTTAATGTATCTGGAAAATCTATGAACAAATTTTAATGATCATACTATACTGTTGGATTATGGTGCTGTCTTGAACTCTGAGGCCTGCATTTGGCAGATCCATATGGCCAAAGCCGAGGTCGAGGTAGAGGGAGAGGGCGTGGTTGGGGCAGAGGTGGATATGGAAACTACCAAGGGGGATATGGCAACTACCAGGGTGGATATGGCAACTACCAGGGTGGATATGGCCAGTACCAAGGCGGATCTGGCTACTATCAAGGTGGTTCTGGCCATTACCAAGGTGGATCAAGCTACCAAGGTGGATCGGGCGGCTACCAAGGCAACTATCAAGGTAGATAAGGTTTTCCTCTTTCAGTTTCGCTCATGCTAATTCTTGAGTAAGACCTAATTTTCAGTTTCTATTTTGTCAACATAGATAATGGTGGGTACTCAAATTGGAGTAGAGGTGGTGGGCGAGGCAGAGGTTGGACATATCGTGGTAAGTTTCTTTCTCAACTTTCTTCTCTTGTTCAGAATCTAACCAACTGCCATTTTGCGGACTTTGCAGATTTTTGGTGCCACCTAACTCTTGATTAATCTTATGGGGGTGTAATCTGTATTTTTTAGAATTCCTTAAGAAAAAGAGATGGAATGTTTTCAAAGTGACCTCTTAACTATTTCTTGGTTTAACCAATATTGGGTATTGAATTTTTTTAGTGTATGACAAATCCTTATCCTTATAGAATGTGTTGAAAACGATCAAGTGTGGTTAGGATGGATCAAGCTGAGTTGTTCTAATCAATTGCATTCCTTTCAGGAACTGGCTATGATAGAGGCAGAGGGGGTAGGAGTTACAGTCGAGGTCGGGGACGGATAG

mRNA sequence

ATGGATAGGTACCAGAAGGTCGAGAAACCTAAACCTGAATCTCCGATAAACGAAAATGAAATCCGCATCACCAGTCAAGGCGCTATTCGTAACTACATCACTTATGCTTCCACCCTGCTTCAGGACAAACGTGTTAGGGAGATAGTGTTGAAAGCCATGGGGCAGGCAATCAGTAAAGCGGTTGCCATTGCAGAAATTTTAAAGGCCAGTTTCATTCTGAAACAGAAGAGAACTCCACGATTGCATCAAGAAACTTCCATCAGCTCAGTAAGCATAACTGATGTATGGGAACCTATTGAAGAAGGTCTTGTACCTGTGGAGATGACTCGTCATGTCTCAATGATATCAATTACCTTGTCAAATCGAGAACTAAATAAAAACTCTCCTGGGTATCAAGCTCCACAATTCGTGGAGCAGCCAAAGCAACAATATAATCAGCAGCAACAGCCCAGACAGTCTCGTCCTTATTACAATGCTGTTAATGAAGAATGTGTTGAAAACGATCAAGTGTGGTTAGGATGGATCAAGCTGAGTTGTTCTAATCAATTGCATTCCTTTCAGGAACTGGCTATGATAGAGGCAGAGGGGGTAGGAGTTACAGTCGAGGTCGGGGACGGATAG

Coding sequence (CDS)

ATGGATAGGTACCAGAAGGTCGAGAAACCTAAACCTGAATCTCCGATAAACGAAAATGAAATCCGCATCACCAGTCAAGGCGCTATTCGTAACTACATCACTTATGCTTCCACCCTGCTTCAGGACAAACGTGTTAGGGAGATAGTGTTGAAAGCCATGGGGCAGGCAATCAGTAAAGCGGTTGCCATTGCAGAAATTTTAAAGGCCAGTTTCATTCTGAAACAGAAGAGAACTCCACGATTGCATCAAGAAACTTCCATCAGCTCAGTAAGCATAACTGATGTATGGGAACCTATTGAAGAAGGTCTTGTACCTGTGGAGATGACTCGTCATGTCTCAATGATATCAATTACCTTGTCAAATCGAGAACTAAATAAAAACTCTCCTGGGTATCAAGCTCCACAATTCGTGGAGCAGCCAAAGCAACAATATAATCAGCAGCAACAGCCCAGACAGTCTCGTCCTTATTACAATGCTGTTAATGAAGAATGTGTTGAAAACGATCAAGTGTGGTTAGGATGGATCAAGCTGAGTTGTTCTAATCAATTGCATTCCTTTCAGGAACTGGCTATGATAGAGGCAGAGGGGGTAGGAGTTACAGTCGAGGTCGGGGACGGATAG

Protein sequence

MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPQFVEQPKQQYNQQQQPRQSRPYYNAVNEECVENDQVWLGWIKLSCSNQLHSFQELAMIEAEGVGVTVEVGDG

Homology

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BLAST of HG10012105.1 vs. NCBI nr
Match: XP_038887999.1 (ribonuclease P protein subunit p25-like isoform X9 [Benincasa hispida])

HSP 1 Score: 283.1 bits (723), Expect = 1.9e-72
Identity = 155/171 (90.64%), Postives = 156/171 (91.23%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKA
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKA 60

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           VAIAEILK       KRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS
Sbjct: 61  VAIAEILK-------KRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120

Query: 121 NRELNKNSPGYQAPQFVEQPKQQYNQQ--QQPRQSRPYYNAVNEECVENDQ 170
           NRELNKNSPGYQA QFVEQPKQQYNQQ  QQPRQSRPYYNAVNE+     Q
Sbjct: 121 NRELNKNSPGYQASQFVEQPKQQYNQQQHQQPRQSRPYYNAVNEDLYGQSQ 164

[Close]

BLAST of HG10012105.1 vs. NCBI nr
Match: KAG6606323.1 (Ribonuclease P protein subunit p25-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 276.6 bits (706), Expect = 1.8e-70
Identity = 149/168 (88.69%), Postives = 153/168 (91.07%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           VAIAEILK       KRTPRLHQETSISSVSITDVWEPIEEGL+PVEMTRHVSMISITLS
Sbjct: 61  VAIAEILK-------KRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLS 120

Query: 121 NRELNKNSPGYQAPQFVEQPKQQYN-----QQQQPRQSRPYYNAVNEE 164
           NRELNKN+PGYQAP  VEQPKQQYN     QQQQPRQSRPYYNA+NE+
Sbjct: 121 NRELNKNAPGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINED 161

[Close]

BLAST of HG10012105.1 vs. NCBI nr
Match: XP_022159880.1 (protein FAM98A-like [Momordica charantia])

HSP 1 Score: 276.6 bits (706), Expect = 1.8e-70
Identity = 150/167 (89.82%), Postives = 153/167 (91.62%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPE PINENEIRITSQGAIRNYITYASTLLQDKRVREIV KAMGQAISKA
Sbjct: 1   MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVFKAMGQAISKA 60

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           VAIAEILK       KRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS
Sbjct: 61  VAIAEILK-------KRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120

Query: 121 NRELNKNSPGYQAPQFVEQPKQQYN----QQQQPRQSRPYYNAVNEE 164
           NRELNKNSPGYQAP FVEQPKQQ+N    QQQQPRQ+RPYYNAVNE+
Sbjct: 121 NRELNKNSPGYQAPHFVEQPKQQFNYQQQQQQQPRQARPYYNAVNED 160

[Close]

BLAST of HG10012105.1 vs. NCBI nr
Match: KAG7036262.1 (Ribonuclease P protein subunit p25-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 276.6 bits (706), Expect = 1.8e-70
Identity = 149/168 (88.69%), Postives = 153/168 (91.07%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           VAIAEILK       KRTPRLHQETSISSVSITDVWEPIEEGL+PVEMTRHVSMISITLS
Sbjct: 61  VAIAEILK-------KRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLS 120

Query: 121 NRELNKNSPGYQAPQFVEQPKQQYN-----QQQQPRQSRPYYNAVNEE 164
           NRELNKN+PGYQAP  VEQPKQQYN     QQQQPRQSRPYYNA+NE+
Sbjct: 121 NRELNKNAPGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINED 161

[Close]

BLAST of HG10012105.1 vs. NCBI nr
Match: XP_022930955.1 (glycine-rich RNA-binding protein 10-like [Cucurbita moschata])

HSP 1 Score: 276.6 bits (706), Expect = 1.8e-70
Identity = 149/168 (88.69%), Postives = 153/168 (91.07%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           VAIAEILK       KRTPRLHQETSISSVSITDVWEPIEEGL+PVEMTRHVSMISITLS
Sbjct: 61  VAIAEILK-------KRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLS 120

Query: 121 NRELNKNSPGYQAPQFVEQPKQQYN-----QQQQPRQSRPYYNAVNEE 164
           NRELNKN+PGYQAP  VEQPKQQYN     QQQQPRQSRPYYNA+NE+
Sbjct: 121 NRELNKNAPGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINED 161

[Close]

BLAST of HG10012105.1 vs. ExPASy TrEMBL
Match: A0A6J1E011 (protein FAM98A-like OS=Momordica charantia OX=3673 GN=LOC111026164 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 8.7e-71
Identity = 150/167 (89.82%), Postives = 153/167 (91.62%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPE PINENEIRITSQGAIRNYITYASTLLQDKRVREIV KAMGQAISKA
Sbjct: 1   MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVFKAMGQAISKA 60

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           VAIAEILK       KRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS
Sbjct: 61  VAIAEILK-------KRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120

Query: 121 NRELNKNSPGYQAPQFVEQPKQQYN----QQQQPRQSRPYYNAVNEE 164
           NRELNKNSPGYQAP FVEQPKQQ+N    QQQQPRQ+RPYYNAVNE+
Sbjct: 121 NRELNKNSPGYQAPHFVEQPKQQFNYQQQQQQQPRQARPYYNAVNED 160

[Close]

BLAST of HG10012105.1 vs. ExPASy TrEMBL
Match: A0A6J1EY76 (glycine-rich RNA-binding protein 10-like OS=Cucurbita moschata OX=3662 GN=LOC111437293 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 8.7e-71
Identity = 149/168 (88.69%), Postives = 153/168 (91.07%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           VAIAEILK       KRTPRLHQETSISSVSITDVWEPIEEGL+PVEMTRHVSMISITLS
Sbjct: 61  VAIAEILK-------KRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLS 120

Query: 121 NRELNKNSPGYQAPQFVEQPKQQYN-----QQQQPRQSRPYYNAVNEE 164
           NRELNKN+PGYQAP  VEQPKQQYN     QQQQPRQSRPYYNA+NE+
Sbjct: 121 NRELNKNAPGYQAPHVVEQPKQQYNLQQQQQQQQPRQSRPYYNAINED 161

[Close]

BLAST of HG10012105.1 vs. ExPASy TrEMBL
Match: A0A6J1K2C9 (protein FAM98A-like OS=Cucurbita maxima OX=3661 GN=LOC111491085 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.9e-70
Identity = 148/166 (89.16%), Postives = 153/166 (92.17%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPI+ENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK 
Sbjct: 1   MDRYQKVEKPKPESPISENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           VAIAEILK       KRTPRLHQETSISSVSITDVWEPIEEGL+PVEMTRHVSMISITLS
Sbjct: 61  VAIAEILK-------KRTPRLHQETSISSVSITDVWEPIEEGLIPVEMTRHVSMISITLS 120

Query: 121 NRELNKNSPGYQAPQFVEQPKQQYN---QQQQPRQSRPYYNAVNEE 164
           NRELNKN+PGYQAP  VEQPKQQYN   QQQQPRQSRPYYNA+NE+
Sbjct: 121 NRELNKNAPGYQAPNVVEQPKQQYNLQQQQQQPRQSRPYYNAINED 159

[Close]

BLAST of HG10012105.1 vs. ExPASy TrEMBL
Match: A0A6J1HFQ0 (protein FAM98A isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111463892 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.5e-70
Identity = 149/165 (90.30%), Postives = 153/165 (92.73%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           V+IAEILK       KRTP+LHQETSISSVSI DVWEPIEEGLVPVEMTRHVSMISITLS
Sbjct: 61  VSIAEILK-------KRTPQLHQETSISSVSIIDVWEPIEEGLVPVEMTRHVSMISITLS 120

Query: 121 NRELNKNSPGYQAPQFVEQPKQQY--NQQQQPRQSRPYYNAVNEE 164
           NRELNK+SPGYQAPQFVEQPKQQY   QQQQPRQSRPYYNAVNE+
Sbjct: 121 NRELNKDSPGYQAPQFVEQPKQQYKQQQQQQPRQSRPYYNAVNED 158

[Close]

BLAST of HG10012105.1 vs. ExPASy TrEMBL
Match: A0A6J1HRM7 (protein FAM98A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466871 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 6.2e-69
Identity = 146/165 (88.48%), Postives = 153/165 (92.73%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESP+N+NEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK 
Sbjct: 1   MDRYQKVEKPKPESPLNKNEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           V+IAEILK       KRTP+LHQETSISSVSI DVWEPIEEGLVPVEMTR+VSMISITLS
Sbjct: 61  VSIAEILK-------KRTPQLHQETSISSVSIIDVWEPIEEGLVPVEMTRYVSMISITLS 120

Query: 121 NRELNKNSPGYQAPQFVEQPKQQY--NQQQQPRQSRPYYNAVNEE 164
           NRELNK+SPGYQAPQFVEQPKQQY   QQQQPRQSRPYYNAVNE+
Sbjct: 121 NRELNKDSPGYQAPQFVEQPKQQYKQQQQQQPRQSRPYYNAVNED 158

[Close]

BLAST of HG10012105.1 vs. TAIR 10
Match: AT3G07030.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 205.7 bits (522), Expect = 3.6e-53
Identity = 115/163 (70.55%), Postives = 132/163 (80.98%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKA 60
           MDRYQ+V KPKPESPINENEIRITS+G IRNYI+YA++LLQ+K V++IVLKAMGQAISK 
Sbjct: 1   MDRYQRVAKPKPESPINENEIRITSKGLIRNYISYATSLLQEKSVKDIVLKAMGQAISKT 60

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           VAI+EILK        + P LHQ+ +ISS+SITDVWEP EEGL PVE+TRHVSMISITLS
Sbjct: 61  VAISEILK-------NKIPGLHQDIAISSISITDVWEPTEEGLFPVELTRHVSMISITLS 120

Query: 121 NRELNKNSPGYQAPQFVEQPKQQYNQQQQPRQSRPYYNAVNEE 164
             ELNK+SPGYQAP   +Q K QY Q QQ RQ+R  YNA  EE
Sbjct: 121 LSELNKDSPGYQAPAQSDQSKPQY-QPQQGRQARLPYNAYGEE 155

[Close]

BLAST of HG10012105.1 vs. TAIR 10
Match: AT1G76010.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 159.5 bits (402), Expect = 3.0e-39
Identity = 89/155 (57.42%), Postives = 108/155 (69.68%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKA 60
           MD+YQ+V KPK ++PI+ NEIRITSQG  RNYITYA TLLQDK   E+V KAMG+AI+K 
Sbjct: 1   MDKYQRVVKPKADTPIDANEIRITSQGRARNYITYAMTLLQDKGSTEVVFKAMGRAINKT 60

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           V I E++K       +R P LHQ TSI S  ITD WEP EEGL+P+E TRHVSMI+ITLS
Sbjct: 61  VTIVELIK-------RRIPDLHQNTSIGSTDITDTWEPTEEGLLPLETTRHVSMITITLS 120

Query: 121 NRELNKNSPGYQAPQFVEQPKQQYNQQQQPRQSRP 156
             ELN +S GYQ P  +E  K   +   + R+  P
Sbjct: 121 KIELNTSSVGYQCPIPIELVKPMGDIDYEGREGSP 148

[Close]

BLAST of HG10012105.1 vs. TAIR 10
Match: AT1G20220.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 156.4 bits (394), Expect = 2.5e-38
Identity = 82/141 (58.16%), Postives = 101/141 (71.63%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKA 60
           MD+YQ+VEKPK ++PI ENEIRITS G  RNYITYA  LLQ+ +  E++ KAMG+AI+K+
Sbjct: 1   MDKYQRVEKPKADTPIAENEIRITSMGRARNYITYAMALLQENKSNEVIFKAMGRAINKS 60

Query: 61  VAIAEILKASFILKQKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS 120
           V I E++K       +R P LHQ TSI S  ITD WEP EEGL  +E TRHVSMI+ITLS
Sbjct: 61  VTIVELIK-------RRIPGLHQITSIGSTDITDTWEPTEEGLQTIETTRHVSMITITLS 120

Query: 121 NRELNKNSPGYQAPQFVEQPK 142
             +LN +S GYQ P  +E  K
Sbjct: 121 KEQLNTSSVGYQCPIPIEMVK 134

The following BLAST results are available for this feature:

BLAST of HG10012105.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887999.1	1.9e-72	90.64	ribonuclease P protein subunit p25-like isoform X9 [Benincasa hispida]	[more]
KAG6606323.1	1.8e-70	88.69	Ribonuclease P protein subunit p25-like protein, partial [Cucurbita argyrosperma...	[more]
XP_022159880.1	1.8e-70	89.82	protein FAM98A-like [Momordica charantia]	[more]
KAG7036262.1	1.8e-70	88.69	Ribonuclease P protein subunit p25-like protein [Cucurbita argyrosperma subsp. a...	[more]
XP_022930955.1	1.8e-70	88.69	glycine-rich RNA-binding protein 10-like [Cucurbita moschata]	[more]

BLAST of HG10012105.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10012105.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E011	8.7e-71	89.82	protein FAM98A-like OS=Momordica charantia OX=3673 GN=LOC111026164 PE=4 SV=1	[more]
A0A6J1EY76	8.7e-71	88.69	glycine-rich RNA-binding protein 10-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1K2C9	1.9e-70	89.16	protein FAM98A-like OS=Cucurbita maxima OX=3661 GN=LOC111491085 PE=4 SV=1	[more]
A0A6J1HFQ0	2.5e-70	90.30	protein FAM98A isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111463892 PE=4 SV=...	[more]
A0A6J1HRM7	6.2e-69	88.48	protein FAM98A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466871 PE=4 ...	[more]

BLAST of HG10012105.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07030.1	3.6e-53	70.55	Alba DNA/RNA-binding protein	[more]
AT1G76010.1	3.0e-39	57.42	Alba DNA/RNA-binding protein	[more]
AT1G20220.1	2.5e-38	58.16	Alba DNA/RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036882	Alba-like domain superfamily	GENE3D	3.30.110.20		coord: 14..124 e-value: 9.9E-32 score: 110.8
IPR036882	Alba-like domain superfamily	SUPERFAMILY	82704	AlbA-like	coord: 16..123
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 19..72 e-value: 3.5E-16 score: 58.8
None	No IPR available	PANTHER	PTHR13516	RIBONUCLEASE P SUBUNIT P25	coord: 1..165
None	No IPR available	PANTHER	PTHR13516:SF3	ALBA DNA/RNA-BINDING PROTEIN	coord: 1..165

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10012105	HG10012105	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10012105.1-cds	HG10012105.1-cds-Chr01:17751436..17751558	CDS
HG10012105.1-cds	HG10012105.1-cds-Chr01:17754465..17754545	CDS
HG10012105.1-cds	HG10012105.1-cds-Chr01:17754603..17754712	CDS
HG10012105.1-cds	HG10012105.1-cds-Chr01:17754915..17754989	CDS
HG10012105.1-cds	HG10012105.1-cds-Chr01:17755118..17755215	CDS
HG10012105.1-cds	HG10012105.1-cds-Chr01:17757786..17757919	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10012105.1	HG10012105.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding