HG10012041.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10012041.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein kinase domain-containing protein
Location	Chr01: 16860369 .. 16860674 (-)
Sequence length	306
RNA-Seq Expression	HG10012041.1
Synteny	HG10012041.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTGGGATTAATAGTGTTTAAAGTTGGCTTTCAAGATTCTATAGGCAAACTGGTCAAATGGAATAAAGAAGATGAAACTCCCTGCAACTGGCTTGGTGTCAAACGCAATCATATTTCCAATTCACATCGTCCTGAAGTTGCAATTCCTTCGTGTACTTACTTGCCAACAACAACTTCACCGGTACAATCAACTTTGCTCTTTCTCACCTTAGAGGAAGTCCATCGTTGTGGACATCCAAAAGTTTCTAAGGACCCCCGTCGCATGGTCGTCGGCTTCCCTTGCATACACGCGTTCTATTGA

mRNA sequence

ATGATTTTGGGATTAATAGTGTTTAAAGTTGGCTTTCAAGATTCTATAGGCAAACTGGTCAAATGGAATAAAGAAGATGAAACTCCCTGCAACTGGCTTGGTGTCAAACGCAATCATATTTCCAATTCACATCGTCCTGAAGTTGCAATTCCTTCGTGTACTTACTTGCCAACAACAACTTCACCGGTACAATCAACTTTGCTCTTTCTCACCTTAGAGGAAGTCCATCGTTGTGGACATCCAAAAGTTTCTAAGGACCCCCGTCGCATGGTCGTCGGCTTCCCTTGCATACACGCGTTCTATTGA

Coding sequence (CDS)

ATGATTTTGGGATTAATAGTGTTTAAAGTTGGCTTTCAAGATTCTATAGGCAAACTGGTCAAATGGAATAAAGAAGATGAAACTCCCTGCAACTGGCTTGGTGTCAAACGCAATCATATTTCCAATTCACATCGTCCTGAAGTTGCAATTCCTTCGTGTACTTACTTGCCAACAACAACTTCACCGGTACAATCAACTTTGCTCTTTCTCACCTTAGAGGAAGTCCATCGTTGTGGACATCCAAAAGTTTCTAAGGACCCCCGTCGCATGGTCGTCGGCTTCCCTTGCATACACGCGTTCTATTGA

Protein sequence

MILGLIVFKVGFQDSIGKLVKWNKEDETPCNWLGVKRNHISNSHRPEVAIPSCTYLPTTTSPVQSTLLFLTLEEVHRCGHPKVSKDPRRMVVGFPCIHAFY

Homology

[Close]

BLAST of HG10012041.1 vs. NCBI nr
Match: XP_023539050.1 (probable LRR receptor-like serine/threonine-protein kinase IRK [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 2  ILGLIVFKVGFQDSIGKLVKWNKEDETPCNWLGVKRNHISN 43
          +LGLIVFK G QD +GKL+ WN+ED+TPCNW G+K N  +N
Sbjct: 27 VLGLIVFKAGLQDPLGKLISWNEEDDTPCNWFGIKCNPKTN 67

[Close]

BLAST of HG10012041.1 vs. NCBI nr
Match: XP_022941623.1 (probable LRR receptor-like serine/threonine-protein kinase IRK [Cucurbita moschata])

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 2  ILGLIVFKVGFQDSIGKLVKWNKEDETPCNWLGVKRNHISN 43
          +LGLIVFK G QD +GKL+ WN+ED+TPCNW G+K N  +N
Sbjct: 27 VLGLIVFKAGLQDPLGKLISWNEEDDTPCNWFGIKCNPKTN 67

[Close]

BLAST of HG10012041.1 vs. NCBI nr
Match: KAG7027857.1 (putative LRR receptor-like serine/threonine-protein kinase IRK, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 2  ILGLIVFKVGFQDSIGKLVKWNKEDETPCNWLGVKRNHISN 43
          +LGLIVFK G QD +GKL+ WN+ED+TPCNW G+K N  +N
Sbjct: 33 VLGLIVFKAGLQDPLGKLISWNEEDDTPCNWFGIKCNPKTN 73

[Close]

BLAST of HG10012041.1 vs. NCBI nr
Match: XP_004137674.1 (probable LRR receptor-like serine/threonine-protein kinase IRK [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 2  ILGLIVFKVGFQDSIGKLVKWNKEDETPCNWLGVKRNHISN 43
          +LGLIVFK G QD +GKLV WN++DETPCNW GVK N  +N
Sbjct: 27 VLGLIVFKAGLQDPMGKLVTWNEDDETPCNWFGVKCNPKTN 67

[Close]

BLAST of HG10012041.1 vs. NCBI nr
Match: KAE8650966.1 (hypothetical protein Csa_002046 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 2  ILGLIVFKVGFQDSIGKLVKWNKEDETPCNWLGVKRNHISN 43
          +LGLIVFK G QD +GKLV WN++DETPCNW GVK N  +N
Sbjct: 27 VLGLIVFKAGLQDPMGKLVTWNEDDETPCNWFGVKCNPKTN 67

[Close]

BLAST of HG10012041.1 vs. ExPASy Swiss-Prot
Match: Q9LZV7 (Leucine-rich repeat receptor-like protein kinase PXC2 OS=Arabidopsis thaliana OX=3702 GN=PXC2 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.6e-06
Identity = 20/33 (60.61%), Postives = 23/33 (69.70%), Query Frame = 0


Query: 2  ILGLIVFKVGFQDSIGKLVKWNKEDETPCNWLG 35
          +LGLIVFK G  D + KL  WN ED  PCNW+G
Sbjct: 28 VLGLIVFKAGLDDPLSKLSSWNSEDYDPCNWVG 60

[Close]

BLAST of HG10012041.1 vs. ExPASy Swiss-Prot
Match: Q9LY03 (Probable LRR receptor-like serine/threonine-protein kinase IRK OS=Arabidopsis thaliana OX=3702 GN=IRK PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.0e-05
Identity = 20/35 (57.14%), Postives = 25/35 (71.43%), Query Frame = 0


Query: 2  ILGLIVFKVGFQDSIGKLVKWNKEDETPCNWLGVK 37
          +LGLIVFK   +D   KL  WN++D TPC+W GVK
Sbjct: 29 VLGLIVFKADLRDPEQKLASWNEDDYTPCSWNGVK 63

[Close]

BLAST of HG10012041.1 vs. ExPASy Swiss-Prot
Match: O49318 (Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana OX=3702 GN=At2g33170 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-04
Identity = 17/25 (68.00%), Postives = 20/25 (80.00%), Query Frame = 0


Query: 11 GFQDSIGKLVKWNKEDETPCNWLGV 36
          GFQDS+ +L  WN  DETPCNW+GV
Sbjct: 47 GFQDSLNRLHNWNGIDETPCNWIGV 71

[Close]

BLAST of HG10012041.1 vs. ExPASy TrEMBL
Match: A0A6J1I668 (probable LRR receptor-like serine/threonine-protein kinase IRK OS=Cucurbita maxima OX=3661 GN=LOC111470000 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.1e-08
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 2  ILGLIVFKVGFQDSIGKLVKWNKEDETPCNWLGVKRNHISN 43
          +LGLIVFK G QD +GKL+ WN+ED+TPCNW G+K N  +N
Sbjct: 27 VLGLIVFKAGLQDPLGKLISWNEEDDTPCNWFGIKCNPKTN 67

[Close]

BLAST of HG10012041.1 vs. ExPASy TrEMBL
Match: A0A5D3DMN8 (Putative LRR receptor-like serine/threonine-protein kinase IRK OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00150 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.1e-08
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 2  ILGLIVFKVGFQDSIGKLVKWNKEDETPCNWLGVKRNHISN 43
          +LGLIVFK G QD +GKLV WN++DETPCNW GVK N  +N
Sbjct: 27 VLGLIVFKAGLQDPMGKLVTWNEDDETPCNWFGVKCNPKTN 67

[Close]

BLAST of HG10012041.1 vs. ExPASy TrEMBL
Match: A0A5A7TRM1 (Putative LRR receptor-like serine/threonine-protein kinase IRK OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005930 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.1e-08
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 2  ILGLIVFKVGFQDSIGKLVKWNKEDETPCNWLGVKRNHISN 43
          +LGLIVFK G QD +GKLV WN++DETPCNW GVK N  +N
Sbjct: 27 VLGLIVFKAGLQDPMGKLVTWNEDDETPCNWFGVKCNPKTN 67

[Close]

BLAST of HG10012041.1 vs. ExPASy TrEMBL
Match: A0A0A0LF35 (Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G728030 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.1e-08
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 2  ILGLIVFKVGFQDSIGKLVKWNKEDETPCNWLGVKRNHISN 43
          +LGLIVFK G QD +GKLV WN++DETPCNW GVK N  +N
Sbjct: 27 VLGLIVFKAGLQDPMGKLVTWNEDDETPCNWFGVKCNPKTN 67

[Close]

BLAST of HG10012041.1 vs. ExPASy TrEMBL
Match: A0A6J1FSM0 (probable LRR receptor-like serine/threonine-protein kinase IRK OS=Cucurbita moschata OX=3662 GN=LOC111446924 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.1e-08
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 2  ILGLIVFKVGFQDSIGKLVKWNKEDETPCNWLGVKRNHISN 43
          +LGLIVFK G QD +GKL+ WN+ED+TPCNW G+K N  +N
Sbjct: 27 VLGLIVFKAGLQDPLGKLISWNEEDDTPCNWFGIKCNPKTN 67

[Close]

BLAST of HG10012041.1 vs. TAIR 10
Match: AT5G01890.1 (Leucine-rich receptor-like protein kinase family protein )

HSP 1 Score: 52.0 bits (123), Expect = 3.3e-07
Identity = 20/33 (60.61%), Postives = 23/33 (69.70%), Query Frame = 0


Query: 2  ILGLIVFKVGFQDSIGKLVKWNKEDETPCNWLG 35
          +LGLIVFK G  D + KL  WN ED  PCNW+G
Sbjct: 28 VLGLIVFKAGLDDPLSKLSSWNSEDYDPCNWVG 60

[Close]

BLAST of HG10012041.1 vs. TAIR 10
Match: AT3G56370.1 (Leucine-rich repeat protein kinase family protein )

HSP 1 Score: 49.3 bits (116), Expect = 2.1e-06
Identity = 20/35 (57.14%), Postives = 25/35 (71.43%), Query Frame = 0


Query: 2  ILGLIVFKVGFQDSIGKLVKWNKEDETPCNWLGVK 37
          +LGLIVFK   +D   KL  WN++D TPC+W GVK
Sbjct: 29 VLGLIVFKADLRDPEQKLASWNEDDYTPCSWNGVK 63

[Close]

BLAST of HG10012041.1 vs. TAIR 10
Match: AT2G33170.1 (Leucine-rich repeat receptor-like protein kinase family protein )

HSP 1 Score: 46.6 bits (109), Expect = 1.4e-05
Identity = 17/25 (68.00%), Postives = 20/25 (80.00%), Query Frame = 0


Query: 11 GFQDSIGKLVKWNKEDETPCNWLGV 36
          GFQDS+ +L  WN  DETPCNW+GV
Sbjct: 47 GFQDSLNRLHNWNGIDETPCNWIGV 71

[Close]

BLAST of HG10012041.1 vs. TAIR 10
Match: AT3G28040.1 (Leucine-rich receptor-like protein kinase family protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 18/37 (48.65%), Postives = 22/37 (59.46%), Query Frame = 0


Query: 2  ILGLIVFKVGFQDSIGKLVKWNKEDETPCNWLGVKRN 39
          +LGLIVFK    D    L  W ++D TPC+W  VK N
Sbjct: 37 VLGLIVFKSDLNDPFSHLESWTEDDNTPCSWSYVKCN 73

The following BLAST results are available for this feature:

BLAST of HG10012041.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539050.1	1.1e-07	63.41	probable LRR receptor-like serine/threonine-protein kinase IRK [Cucurbita pepo s...	[more]
XP_022941623.1	1.1e-07	63.41	probable LRR receptor-like serine/threonine-protein kinase IRK [Cucurbita moscha...	[more]
KAG7027857.1	1.1e-07	63.41	putative LRR receptor-like serine/threonine-protein kinase IRK, partial [Cucurbi...	[more]
XP_004137674.1	1.1e-07	68.29	probable LRR receptor-like serine/threonine-protein kinase IRK [Cucumis sativus]	[more]
KAE8650966.1	1.1e-07	68.29	hypothetical protein Csa_002046 [Cucumis sativus]	[more]

BLAST of HG10012041.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZV7	4.6e-06	60.61	Leucine-rich repeat receptor-like protein kinase PXC2 OS=Arabidopsis thaliana OX...	[more]
Q9LY03	3.0e-05	57.14	Probable LRR receptor-like serine/threonine-protein kinase IRK OS=Arabidopsis th...	[more]
O49318	1.9e-04	68.00	Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidops...	[more]

BLAST of HG10012041.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I668	5.1e-08	63.41	probable LRR receptor-like serine/threonine-protein kinase IRK OS=Cucurbita maxi...	[more]
A0A5D3DMN8	5.1e-08	68.29	Putative LRR receptor-like serine/threonine-protein kinase IRK OS=Cucumis melo v...	[more]
A0A5A7TRM1	5.1e-08	68.29	Putative LRR receptor-like serine/threonine-protein kinase IRK OS=Cucumis melo v...	[more]
A0A0A0LF35	5.1e-08	68.29	Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G728...	[more]
A0A6J1FSM0	5.1e-08	63.41	probable LRR receptor-like serine/threonine-protein kinase IRK OS=Cucurbita mosc...	[more]

BLAST of HG10012041.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01890.1	3.3e-07	60.61	Leucine-rich receptor-like protein kinase family protein	[more]
AT3G56370.1	2.1e-06	57.14	Leucine-rich repeat protein kinase family protein	[more]
AT2G33170.1	1.4e-05	68.00	Leucine-rich repeat receptor-like protein kinase family protein	[more]
AT3G28040.1	1.2e-04	48.65	Leucine-rich receptor-like protein kinase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013210	Leucine-rich repeat-containing N-terminal, plant-type	PFAM	PF08263	LRRNT_2	coord: 4..35 e-value: 3.9E-6 score: 27.0

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10012041	HG10012041	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10012041.1-cds	HG10012041.1-cds-Chr01:16860369..16860674	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10012041.1	HG10012041.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity