HG10010385.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010385.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	GATA transcription factor 16-like
Location	Chr06: 21732599 .. 21733215 (+)
Sequence length	417
RNA-Seq Expression	HG10010385.1
Synteny	HG10010385.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGATCCGATCGAGGAAGTGAGTGATCGCGATTCGCGAGTCTTTTATTCAGTTGATTTTCTTACTGATTTTGAAATTATTGAGTACTGATTCGATTGTACTGTGCTGGAATATAGGGATCGGAGTTCAAGGACGCCGGAAAGTCTTCACCAGCGGAAAGCGAGCAGAATAAGAAGACCTGCGCTGATTGCGGTACGACGAAGACTCCTCTCTGGCGTGGAGGTCCAGCTGGCCCTAAGGTGATTTGTTCTTCACATCCATCTCTAAACTTGATCGAATATTCTGTTTGATCCTCCATCTCTATTGCTCGATTTGAACGATCATAGCTTATTTTCTTTCAGTCTCTTTGCAATGCGTGTGGGATCAGAAGCAGGAAGAAGAGAAGATCGCTTCTAGGTTTAAACAGAGGAGGGGAAGTGGAGAGGAAAAACAAAGGAAGTAGTAACAGAAACAACAATGGCGGTGGAAATCAGGCAAAAATTGGGGGAGAGAGCTTGAAATGGAGATCAATGGCGTTTGGTAGAAAAGAATTAATGCAAAGGAGACAGTTGGGAGAGGAAGAACAAGCTGCTGTTTTGTTAATGGCTCTTTCTTATGGATCTGTATATGCTTGA

mRNA sequence

ATGATGGATCCGATCGAGGAAGGATCGGAGTTCAAGGACGCCGGAAAGTCTTCACCAGCGGAAAGCGAGCAGAATAAGAAGACCTGCGCTGATTGCGGTACGACGAAGACTCCTCTCTGGCGTGGAGGTCCAGCTGGCCCTAAGTCTCTTTGCAATGCGTGTGGGATCAGAAGCAGGAAGAAGAGAAGATCGCTTCTAGGTTTAAACAGAGGAGGGGAAGTGGAGAGGAAAAACAAAGGAAGTAGTAACAGAAACAACAATGGCGGTGGAAATCAGGCAAAAATTGGGGGAGAGAGCTTGAAATGGAGATCAATGGCGTTTGGTAGAAAAGAATTAATGCAAAGGAGACAGTTGGGAGAGGAAGAACAAGCTGCTGTTTTGTTAATGGCTCTTTCTTATGGATCTGTATATGCTTGA

Coding sequence (CDS)

ATGATGGATCCGATCGAGGAAGGATCGGAGTTCAAGGACGCCGGAAAGTCTTCACCAGCGGAAAGCGAGCAGAATAAGAAGACCTGCGCTGATTGCGGTACGACGAAGACTCCTCTCTGGCGTGGAGGTCCAGCTGGCCCTAAGTCTCTTTGCAATGCGTGTGGGATCAGAAGCAGGAAGAAGAGAAGATCGCTTCTAGGTTTAAACAGAGGAGGGGAAGTGGAGAGGAAAAACAAAGGAAGTAGTAACAGAAACAACAATGGCGGTGGAAATCAGGCAAAAATTGGGGGAGAGAGCTTGAAATGGAGATCAATGGCGTTTGGTAGAAAAGAATTAATGCAAAGGAGACAGTTGGGAGAGGAAGAACAAGCTGCTGTTTTGTTAATGGCTCTTTCTTATGGATCTGTATATGCTTGA

Protein sequence

MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA

Homology

[Close]

BLAST of HG10010385.1 vs. NCBI nr
Match: XP_004150081.1 (GATA transcription factor 16 [Cucumis sativus] >KGN47402.1 hypothetical protein Csa_022928 [Cucumis sativus])

HSP 1 Score: 259.2 bits (661), Expect = 2.0e-65
Identity = 135/139 (97.12%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPIEEGSEFKDAGK+SP ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSLLGLNRGGEVERKNKGSS-NRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLG 120
           KRRSLLGLNRGGEVERKNKGSS NRNNNGGGNQ KIGGESLKWRSMAFGRKELMQRRQLG
Sbjct: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRRQLG 120

Query: 121 EEEQAAVLLMALSYGSVYA 139
           EEEQAAVLLMALSYGSVYA
Sbjct: 121 EEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of HG10010385.1 vs. NCBI nr
Match: XP_038875288.1 (GATA transcription factor 16-like [Benincasa hispida])

HSP 1 Score: 258.1 bits (658), Expect = 4.4e-65
Identity = 133/138 (96.38%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLGE 120
           KRRSLLGLNRGGEVERK+KGSSNR+NNGGGNQ KIG ESLKWRSMAFGR ELMQRRQLGE
Sbjct: 61  KRRSLLGLNRGGEVERKSKGSSNRSNNGGGNQTKIGRESLKWRSMAFGRNELMQRRQLGE 120

Query: 121 EEQAAVLLMALSYGSVYA 139
           EEQAAVLLMALSYGSVYA
Sbjct: 121 EEQAAVLLMALSYGSVYA 138

[Close]

BLAST of HG10010385.1 vs. NCBI nr
Match: XP_008458384.1 (PREDICTED: GATA transcription factor 16-like isoform X1 [Cucumis melo] >TYK02936.1 GATA transcription factor 16-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 256.9 bits (655), Expect = 9.8e-65
Identity = 134/139 (96.40%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPIEEGSEFKDAGK+SP ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSLLGLNRGGEVERKNKGSS-NRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLG 120
           KRRSLLGLNRGGEVERKNKGSS NRNNNGGGNQ KIGGESLKWRSMAFGRKELMQR QLG
Sbjct: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRTQLG 120

Query: 121 EEEQAAVLLMALSYGSVYA 139
           EEEQAAVLLMALSYGSVYA
Sbjct: 121 EEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of HG10010385.1 vs. NCBI nr
Match: XP_022138518.1 (GATA transcription factor 16-like [Momordica charantia])

HSP 1 Score: 247.7 bits (631), Expect = 6.0e-62
Identity = 129/142 (90.85%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAG----KSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60
           MMDPIEEGSEFKDAG    K+SPAESEQN+KTCADCGTTKTPLWRGGPAGPKSLCNACGI
Sbjct: 1   MMDPIEEGSEFKDAGRSPRKASPAESEQNRKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60

Query: 61  RSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRR 120
           RSRKKRRSLLGLNRG EVERKNKGSSNR +NGGGNQAKIGG++LKWR MAFGR+ELMQRR
Sbjct: 61  RSRKKRRSLLGLNRGSEVERKNKGSSNRTSNGGGNQAKIGGDNLKWRLMAFGREELMQRR 120

Query: 121 QLGEEEQAAVLLMALSYGSVYA 139
           QLGEEEQAAVLLMALSYGSVYA
Sbjct: 121 QLGEEEQAAVLLMALSYGSVYA 142

[Close]

BLAST of HG10010385.1 vs. NCBI nr
Match: XP_023548663.1 (GATA transcription factor 16-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.0 bits (624), Expect = 3.9e-61
Identity = 128/142 (90.14%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGK----SSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60
           MMDPIEEGSEFKDA      SSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI
Sbjct: 1   MMDPIEEGSEFKDAENSPRMSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60

Query: 61  RSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRR 120
           RSRKKRRSLLGLNRG EVERK+KGSSNRN+NGGGNQAK+GG++LKWRS AFGRK+LMQRR
Sbjct: 61  RSRKKRRSLLGLNRGSEVERKSKGSSNRNSNGGGNQAKLGGDNLKWRSTAFGRKDLMQRR 120

Query: 121 QLGEEEQAAVLLMALSYGSVYA 139
           QLGEEEQAAVLLMALSYGSVYA
Sbjct: 121 QLGEEEQAAVLLMALSYGSVYA 142

[Close]

BLAST of HG10010385.1 vs. ExPASy Swiss-Prot
Match: Q9FJ10 (GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.2e-26
Identity = 75/117 (64.10%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 26  KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRN 85
           KKTCADCGT+KTPLWRGGP GPKSLCNACGIR+RKKRR       G E  +K K SS   
Sbjct: 35  KKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRRG------GTEDNKKLKKSS--- 94

Query: 86  NNGGGNQAKIGGESLKWRSMAFGRKEL----MQRRQLGEEEQAAVLLMALSYGSVYA 139
            +GGGN+    GESLK   M  G ++      QR++LGEEEQAAVLLMALSYGSVYA
Sbjct: 95  -SGGGNRK--FGESLKQSLMDLGIRKRSTVEKQRQKLGEEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of HG10010385.1 vs. ExPASy Swiss-Prot
Match: Q8LG10 (GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2)

HSP 1 Score: 114.8 bits (286), Expect = 7.9e-25
Identity = 82/146 (56.16%), Postives = 92/146 (63.01%), Query Frame = 0


Query: 2   MDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKK 61
           +D IEE S       SS       KK+CA CGT+KTPLWRGGPAGPKSLCNACGIR+RKK
Sbjct: 21  VDAIEEHS-----SSSSNEAISNEKKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKK 80

Query: 62  RRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLKWRSMAFGRKELMQ------- 121
           RR+L+  NR    E K K S NRN           G+SLK R M  GR+ +MQ       
Sbjct: 81  RRTLIS-NRS---EDKKKKSHNRNPK--------FGDSLKQRLMELGREVMMQRSTAENQ 140

Query: 122 -RRQLGEEEQAAVLLMALSY-GSVYA 139
            R +LGEEEQAAVLLMALSY  SVYA
Sbjct: 141 RRNKLGEEEQAAVLLMALSYASSVYA 149

[Close]

BLAST of HG10010385.1 vs. ExPASy Swiss-Prot
Match: Q9LIB5 (GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.5e-18
Identity = 66/166 (39.76%), Postives = 85/166 (51.20%), Query Frame = 0


Query: 14  AGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGE 73
           +G    + S   K+TC DCGT +TPLWRGGPAGPKSLCNACGI+SRKKR++ LG+    E
Sbjct: 29  SGSGGGSSSGDTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMR--SE 88

Query: 74  VERKN-----------------------------------------KGSSNRNNNGGGNQ 133
            ++KN                                         + SS+ +N G    
Sbjct: 89  EKKKNRKSNCNNDLNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKF 148

Query: 134 AKIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA 139
             +G +    +  A  +K L   R+LGEEE+AAVLLMALS  SVYA
Sbjct: 149 LDLGFKVPVMKRSAVEKKRLW--RKLGEEERAAVLLMALSCSSVYA 190

[Close]

BLAST of HG10010385.1 vs. ExPASy Swiss-Prot
Match: Q8LC59 (GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-15
Identity = 52/119 (43.70%), Postives = 70/119 (58.82%), Query Frame = 0


Query: 21  ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRS-LLGLNRGGEVERKNK 80
           E +   + C++C TTKTP+WRGGP GPKSLCNACGIR RK+RRS LLG++    + R +K
Sbjct: 20  EEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGIH----IIRSHK 79

Query: 81  GSSNRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA 139
                          +  + +   S + G   + +RR L EEEQAA+ L+ LS  SV A
Sbjct: 80  --------------SLASKKINLLSSSHGGVAVKKRRSLKEEEQAALCLLLLSCSSVLA 120

[Close]

BLAST of HG10010385.1 vs. ExPASy Swiss-Prot
Match: Q6YW48 (Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CGA1 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-12
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 27  KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGG 73
           + C+DC TTKTPLWR GP GPKSLCNACGIR RK RR++     GG
Sbjct: 176 RVCSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKARRAMAAAANGG 221

[Close]

BLAST of HG10010385.1 vs. ExPASy TrEMBL
Match: A0A0A0KG76 (GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G312540 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 9.6e-66
Identity = 135/139 (97.12%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPIEEGSEFKDAGK+SP ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSLLGLNRGGEVERKNKGSS-NRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLG 120
           KRRSLLGLNRGGEVERKNKGSS NRNNNGGGNQ KIGGESLKWRSMAFGRKELMQRRQLG
Sbjct: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRRQLG 120

Query: 121 EEEQAAVLLMALSYGSVYA 139
           EEEQAAVLLMALSYGSVYA
Sbjct: 121 EEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of HG10010385.1 vs. ExPASy TrEMBL
Match: A0A5D3BXI1 (GATA transcription factor 16-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00160 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.8e-65
Identity = 134/139 (96.40%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPIEEGSEFKDAGK+SP ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSLLGLNRGGEVERKNKGSS-NRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLG 120
           KRRSLLGLNRGGEVERKNKGSS NRNNNGGGNQ KIGGESLKWRSMAFGRKELMQR QLG
Sbjct: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRTQLG 120

Query: 121 EEEQAAVLLMALSYGSVYA 139
           EEEQAAVLLMALSYGSVYA
Sbjct: 121 EEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of HG10010385.1 vs. ExPASy TrEMBL
Match: A0A1S3C8C2 (GATA transcription factor 16-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497809 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.8e-65
Identity = 134/139 (96.40%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPIEEGSEFKDAGK+SP ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSLLGLNRGGEVERKNKGSS-NRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLG 120
           KRRSLLGLNRGGEVERKNKGSS NRNNNGGGNQ KIGGESLKWRSMAFGRKELMQR QLG
Sbjct: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRTQLG 120

Query: 121 EEEQAAVLLMALSYGSVYA 139
           EEEQAAVLLMALSYGSVYA
Sbjct: 121 EEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of HG10010385.1 vs. ExPASy TrEMBL
Match: A0A6J1CD73 (GATA transcription factor 16-like OS=Momordica charantia OX=3673 GN=LOC111009666 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.9e-62
Identity = 129/142 (90.85%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAG----KSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60
           MMDPIEEGSEFKDAG    K+SPAESEQN+KTCADCGTTKTPLWRGGPAGPKSLCNACGI
Sbjct: 1   MMDPIEEGSEFKDAGRSPRKASPAESEQNRKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60

Query: 61  RSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRR 120
           RSRKKRRSLLGLNRG EVERKNKGSSNR +NGGGNQAKIGG++LKWR MAFGR+ELMQRR
Sbjct: 61  RSRKKRRSLLGLNRGSEVERKNKGSSNRTSNGGGNQAKIGGDNLKWRLMAFGREELMQRR 120

Query: 121 QLGEEEQAAVLLMALSYGSVYA 139
           QLGEEEQAAVLLMALSYGSVYA
Sbjct: 121 QLGEEEQAAVLLMALSYGSVYA 142

[Close]

BLAST of HG10010385.1 vs. ExPASy TrEMBL
Match: A0A6J1KXU7 (GATA transcription factor 16-like OS=Cucurbita maxima OX=3661 GN=LOC111499182 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.4e-61
Identity = 127/142 (89.44%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGK----SSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60
           MMDP+EEGSEFKDA      SSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI
Sbjct: 1   MMDPMEEGSEFKDAENSSRMSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60

Query: 61  RSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRR 120
           RSRKKRRSLLGLNRG E ERK+KGSSNRN+NGGGNQAK+GG+SLKWRS AFGRK+LMQRR
Sbjct: 61  RSRKKRRSLLGLNRGSEAERKSKGSSNRNSNGGGNQAKLGGDSLKWRSTAFGRKDLMQRR 120

Query: 121 QLGEEEQAAVLLMALSYGSVYA 139
           QLGEEEQAAVLLMALSYGSVYA
Sbjct: 121 QLGEEEQAAVLLMALSYGSVYA 142

[Close]

BLAST of HG10010385.1 vs. TAIR 10
Match: AT5G49300.1 (GATA transcription factor 16 )

HSP 1 Score: 119.0 bits (297), Expect = 3.0e-27
Identity = 75/117 (64.10%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 26  KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRN 85
           KKTCADCGT+KTPLWRGGP GPKSLCNACGIR+RKKRR       G E  +K K SS   
Sbjct: 35  KKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRRG------GTEDNKKLKKSS--- 94

Query: 86  NNGGGNQAKIGGESLKWRSMAFGRKEL----MQRRQLGEEEQAAVLLMALSYGSVYA 139
            +GGGN+    GESLK   M  G ++      QR++LGEEEQAAVLLMALSYGSVYA
Sbjct: 95  -SGGGNRK--FGESLKQSLMDLGIRKRSTVEKQRQKLGEEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of HG10010385.1 vs. TAIR 10
Match: AT3G06740.1 (GATA transcription factor 15 )

HSP 1 Score: 114.8 bits (286), Expect = 5.6e-26
Identity = 82/146 (56.16%), Postives = 92/146 (63.01%), Query Frame = 0


Query: 2   MDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKK 61
           +D IEE S       SS       KK+CA CGT+KTPLWRGGPAGPKSLCNACGIR+RKK
Sbjct: 21  VDAIEEHS-----SSSSNEAISNEKKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKK 80

Query: 62  RRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLKWRSMAFGRKELMQ------- 121
           RR+L+  NR    E K K S NRN           G+SLK R M  GR+ +MQ       
Sbjct: 81  RRTLIS-NRS---EDKKKKSHNRNPK--------FGDSLKQRLMELGREVMMQRSTAENQ 140

Query: 122 -RRQLGEEEQAAVLLMALSY-GSVYA 139
            R +LGEEEQAAVLLMALSY  SVYA
Sbjct: 141 RRNKLGEEEQAAVLLMALSYASSVYA 149

[Close]

BLAST of HG10010385.1 vs. TAIR 10
Match: AT3G16870.1 (GATA transcription factor 17 )

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-19
Identity = 66/166 (39.76%), Postives = 85/166 (51.20%), Query Frame = 0


Query: 14  AGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGE 73
           +G    + S   K+TC DCGT +TPLWRGGPAGPKSLCNACGI+SRKKR++ LG+    E
Sbjct: 29  SGSGGGSSSGDTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMR--SE 88

Query: 74  VERKN-----------------------------------------KGSSNRNNNGGGNQ 133
            ++KN                                         + SS+ +N G    
Sbjct: 89  EKKKNRKSNCNNDLNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKF 148

Query: 134 AKIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA 139
             +G +    +  A  +K L   R+LGEEE+AAVLLMALS  SVYA
Sbjct: 149 LDLGFKVPVMKRSAVEKKRLW--RKLGEEERAAVLLMALSCSSVYA 190

[Close]

BLAST of HG10010385.1 vs. TAIR 10
Match: AT4G16141.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-16
Identity = 66/183 (36.07%), Postives = 85/183 (46.45%), Query Frame = 0


Query: 7   EGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLL 66
           + S+  +   SS       KKTC DCGT++TPLWRGGPAGPKSLCNACGI+SRKKR++ L
Sbjct: 17  DSSDVDNGNCSSSGSGGDTKKTCVDCGTSRTPLWRGGPAGPKSLCNACGIKSRKKRQAAL 76

Query: 67  GL--------------------------------------------------NRGGEVER 126
           G+                                                  N   +++R
Sbjct: 77  GIRQDDIKIKSKSNNNLGLESRNVKTGKGEPVNVKIAKCEPGIVKIAKGEPGNVKNKIKR 136

Query: 127 KNKGSSNRNNNGG-----GNQAKIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMAL 135
             + SS+ NNN       G     G +    +  A  +K L   R+LGEEE+AAVLLMAL
Sbjct: 137 DPENSSSSNNNKKNVKRVGRFLDFGFKVPAMKRSAVEKKRLW--RKLGEEERAAVLLMAL 196

[Close]

BLAST of HG10010385.1 vs. TAIR 10
Match: AT5G26930.1 (GATA transcription factor 23 )

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-16
Identity = 52/119 (43.70%), Postives = 70/119 (58.82%), Query Frame = 0


Query: 21  ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRS-LLGLNRGGEVERKNK 80
           E +   + C++C TTKTP+WRGGP GPKSLCNACGIR RK+RRS LLG++    + R +K
Sbjct: 20  EEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGIH----IIRSHK 79

Query: 81  GSSNRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA 139
                          +  + +   S + G   + +RR L EEEQAA+ L+ LS  SV A
Sbjct: 80  --------------SLASKKINLLSSSHGGVAVKKRRSLKEEEQAALCLLLLSCSSVLA 120

The following BLAST results are available for this feature:

BLAST of HG10010385.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150081.1	2.0e-65	97.12	GATA transcription factor 16 [Cucumis sativus] >KGN47402.1 hypothetical protein ...	[more]
XP_038875288.1	4.4e-65	96.38	GATA transcription factor 16-like [Benincasa hispida]	[more]
XP_008458384.1	9.8e-65	96.40	PREDICTED: GATA transcription factor 16-like isoform X1 [Cucumis melo] >TYK02936...	[more]
XP_022138518.1	6.0e-62	90.85	GATA transcription factor 16-like [Momordica charantia]	[more]
XP_023548663.1	3.9e-61	90.14	GATA transcription factor 16-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10010385.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJ10	4.2e-26	64.10	GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1	[more]
Q8LG10	7.9e-25	56.16	GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2	[more]
Q9LIB5	2.5e-18	39.76	GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1	[more]
Q8LC59	2.0e-15	43.70	GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2	[more]
Q6YW48	3.4e-12	67.39	Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. ...	[more]

BLAST of HG10010385.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG76	9.6e-66	97.12	GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G312540 P...	[more]
A0A5D3BXI1	4.8e-65	96.40	GATA transcription factor 16-like isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3C8C2	4.8e-65	96.40	GATA transcription factor 16-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1CD73	2.9e-62	90.85	GATA transcription factor 16-like OS=Momordica charantia OX=3673 GN=LOC111009666...	[more]
A0A6J1KXU7	5.4e-61	89.44	GATA transcription factor 16-like OS=Cucurbita maxima OX=3661 GN=LOC111499182 PE...	[more]

BLAST of HG10010385.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49300.1	3.0e-27	64.10	GATA transcription factor 16	[more]
AT3G06740.1	5.6e-26	56.16	GATA transcription factor 15	[more]
AT3G16870.1	1.8e-19	39.76	GATA transcription factor 17	[more]
AT4G16141.1	1.4e-16	36.07	GATA type zinc finger transcription factor family protein	[more]
AT5G26930.1	1.4e-16	43.70	GATA transcription factor 23	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 23..81 e-value: 8.0E-13 score: 58.6
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 29..63 e-value: 4.4E-17 score: 61.4
IPR000679	Zinc finger, GATA-type	PROSITE	PS00344	GATA_ZN_FINGER_1	coord: 29..54
IPR000679	Zinc finger, GATA-type	PROSITE	PS50114	GATA_ZN_FINGER_2	coord: 23..59 score: 12.545015
IPR000679	Zinc finger, GATA-type	CDD	cd00202	ZnF_GATA	coord: 28..79 e-value: 5.31643E-14 score: 60.079
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 23..92 e-value: 6.0E-17 score: 63.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..97
None	No IPR available	PANTHER	PTHR47172	OS01G0976800 PROTEIN	coord: 1..138
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 25..62

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10010385	HG10010385	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10010385.1-cds	HG10010385.1-cds-Chr06:21732599..21732619	CDS
HG10010385.1-cds	HG10010385.1-cds-Chr06:21732718..21732840	CDS
HG10010385.1-cds	HG10010385.1-cds-Chr06:21732943..21733215	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10010385.1	HG10010385.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding