HG10009539.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009539.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	conserved peptide upstream open reading frame 28
Location	Chr06: 7194172 .. 7194324 (-)
Sequence length	153
RNA-Seq Expression	HG10009539.1
Synteny	HG10009539.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAAGAAAATTCCAGTAGTAGTAATTACATGCGCTCCCTTTTGGATTCAAGGGCGAGCGCTCGTCTTCCTCTTTCTGCTGCTTCTTCTTTCGCTTTTGGTTCTTGCAAGGAAGGCTGGTACTACCGCTGCCTTGGAGTTGACCCTTGA

mRNA sequence

ATGGTGGAAGAAAATTCCAGTAGTAGTAATTACATGCGCTCCCTTTTGGATTCAAGGGCGAGCGCTCGTCTTCCTCTTTCTGCTGCTTCTTCTTTCGCTTTTGGTTCTTGCAAGGAAGGCTGGTACTACCGCTGCCTTGGAGTTGACCCTTGA

Coding sequence (CDS)

ATGGTGGAAGAAAATTCCAGTAGTAGTAATTACATGCGCTCCCTTTTGGATTCAAGGGCGAGCGCTCGTCTTCCTCTTTCTGCTGCTTCTTCTTTCGCTTTTGGTTCTTGCAAGGAAGGCTGGTACTACCGCTGCCTTGGAGTTGACCCTTGA

Protein sequence

MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP

Homology

[Close]

BLAST of HG10009539.1 vs. NCBI nr
Match: XP_008467130.2 (PREDICTED: uncharacterized protein LOC103504558 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 8.6e-19
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP 51
          MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP
Sbjct: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP 50

[Close]

BLAST of HG10009539.1 vs. NCBI nr
Match: KAG7032577.1 (hypothetical protein SDJN02_06626, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.0 bits (232), Expect = 4.0e-16
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGV 49
          MVEENSSSSNYMRSLLDSRASARLPLSA SSFAFGSCKEGWYYRCLG+
Sbjct: 1  MVEENSSSSNYMRSLLDSRASARLPLSAFSSFAFGSCKEGWYYRCLGM 48

[Close]

BLAST of HG10009539.1 vs. NCBI nr
Match: XP_016647517.1 (PREDICTED: uncharacterized protein LOC107880498 [Prunus mume] >ONI31761.1 hypothetical protein PRUPE_1G329400 [Prunus persica])

HSP 1 Score: 80.9 bits (198), Expect = 3.5e-12
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 7  SSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP 51
          S SN+MRSLL SRASA LP+SAAS+FAFGSCKEGWYYRCLGVDP
Sbjct: 6  SISNFMRSLLQSRASAFLPISAASAFAFGSCKEGWYYRCLGVDP 49

[Close]

BLAST of HG10009539.1 vs. NCBI nr
Match: KAG6579252.1 (hypothetical protein SDJN03_23700, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGW 42
          MVEENS SSNYMRSLLDSRASARLPLSAASSFAFGSCKEGW
Sbjct: 1  MVEENSCSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGW 41

[Close]

BLAST of HG10009539.1 vs. NCBI nr
Match: XP_017971818.1 (PREDICTED: uncharacterized protein LOC108660978 [Theobroma cacao])

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP 51
          MVE   S SN+M SL  SRASA LP+SAAS+FAFGSCKEGWYYRCLG+DP
Sbjct: 1  MVETIRSDSNFMLSLCQSRASALLPVSAASAFAFGSCKEGWYYRCLGLDP 50

[Close]

BLAST of HG10009539.1 vs. ExPASy TrEMBL
Match: A0A1S3CSS9 (uncharacterized protein LOC103504558 OS=Cucumis melo OX=3656 GN=LOC103504558 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.2e-19
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP 51
          MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP
Sbjct: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP 50

[Close]

BLAST of HG10009539.1 vs. ExPASy TrEMBL
Match: A0A251R6V3 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G329400 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-12
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 7  SSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP 51
          S SN+MRSLL SRASA LP+SAAS+FAFGSCKEGWYYRCLGVDP
Sbjct: 6  SISNFMRSLLQSRASAFLPISAASAFAFGSCKEGWYYRCLGVDP 49

[Close]

BLAST of HG10009539.1 vs. ExPASy TrEMBL
Match: A0A5D3E3V5 (Senescence-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00320 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.2e-11
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEG 41
          MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEG
Sbjct: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEG 40

[Close]

BLAST of HG10009539.1 vs. ExPASy TrEMBL
Match: A0A2P6R3E4 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0441831 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.6e-10
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 7  SSSNYMRSLLDSRASAR-LPLSAASSFAFGSCKEGWYYRCLGVDP 51
          S SN+MRS+  SRASA  LP+SAAS+F+FGSCKEGWYYRCLGVDP
Sbjct: 6  SISNFMRSIAQSRASAAILPVSAASAFSFGSCKEGWYYRCLGVDP 50

[Close]

BLAST of HG10009539.1 vs. ExPASy TrEMBL
Match: A0A5D2MAG5 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D01G186600v1 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.9e-10
Identity = 37/50 (74.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP 51
          MVE   S S  M SL  SRAS  LPLSAAS+FAFGSCKEGWYYRCLG+DP
Sbjct: 1  MVETIWSCSILMLSLCKSRASTLLPLSAASAFAFGSCKEGWYYRCLGLDP 50

[Close]

BLAST of HG10009539.1 vs. TAIR 10
Match: AT1G70782.1 (conserved peptide upstream open reading frame 28 )

HSP 1 Score: 64.7 bits (156), Expect = 2.4e-11
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP 51
          MVE N     +  SL   RAS  LPLS +S FAFGSCKEGWY+RCLG+DP
Sbjct: 1  MVETNPIGGKFTLSLSIKRASFSLPLSTSSVFAFGSCKEGWYFRCLGLDP 50

[Close]

BLAST of HG10009539.1 vs. TAIR 10
Match: AT1G23149.1 (conserved peptide upstream open reading frame 29 )

HSP 1 Score: 56.6 bits (135), Expect = 6.6e-09
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 1  MVEENSSSSNYMRSLLDSRAS-ARLPLSAASSFAFGSCKEGWYYRCLGVDP 51
          MVE N    N+  +L   RAS   +PLS  S F+FGSCKEGWY+RC+G+DP
Sbjct: 1  MVETNLIGDNHRLTLSTKRASFLIIPLSQDSVFSFGSCKEGWYFRCIGLDP 51

The following BLAST results are available for this feature:

BLAST of HG10009539.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008467130.2	8.6e-19	100.00	PREDICTED: uncharacterized protein LOC103504558 [Cucumis melo]	[more]
KAG7032577.1	4.0e-16	95.83	hypothetical protein SDJN02_06626, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_016647517.1	3.5e-12	86.36	PREDICTED: uncharacterized protein LOC107880498 [Prunus mume] >ONI31761.1 hypoth...	[more]
KAG6579252.1	1.3e-11	97.56	hypothetical protein SDJN03_23700, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_017971818.1	1.3e-11	76.00	PREDICTED: uncharacterized protein LOC108660978 [Theobroma cacao]	[more]

BLAST of HG10009539.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10009539.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CSS9	4.2e-19	100.00	uncharacterized protein LOC103504558 OS=Cucumis melo OX=3656 GN=LOC103504558 PE=...	[more]
A0A251R6V3	1.7e-12	86.36	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G329400 PE=4 SV=1	[more]
A0A5D3E3V5	3.2e-11	100.00	Senescence-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A2P6R3E4	4.6e-10	77.78	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0441831 PE=4...	[more]
A0A5D2MAG5	7.9e-10	74.00	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D01G186600v1 P...	[more]

BLAST of HG10009539.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70782.1	2.4e-11	62.00	conserved peptide upstream open reading frame 28	[more]
AT1G23149.1	6.6e-09	54.90	conserved peptide upstream open reading frame 29	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10009539	HG10009539	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10009539.1-cds	HG10009539.1-cds-Chr06:7194172..7194324	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10009539.1	HG10009539.1-protein	polypeptide