HG10008941.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008941.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	F-box protein
Location	Chr06: 919027 .. 921359 (+)
Sequence length	684
RNA-Seq Expression	HG10008941.1
Synteny	HG10008941.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGACGAGCTCTGCTGCTTCGGCTGCACATCTCCTTGCTCAGGGTGTTGAAGCTGTTTTGCCTAAGCAAAAGAGAAATTCAGCAATTGTAGAATTTAAGAAAGCAATCGTTGCTCATAAGAGGCGTAGTAAAGCACATCAGGAAGAAAAAGGTGAATTAGTTGTAAGAATGGTTTTAACTTTTTTGCTCCCTTTCTTTCTGGGGTATTTGCTATTTATACATCAAATTGAACATAGTTATCATGTTTTGCAACTCAATCTGATTGCTAACTCATAAATTCCTTTAGGTTCTGCTCAAGTCCCTCAAGACGTTCTCCTCCACATATTCCGCTTTCTAGATATTCAATCTTTAGTTTCAGCTGGGCTAGTCTGCCGGTAATTTTCTGTCCTTAAGACTGTTGTCATGATATTTCCTTATATATCACAAAGTTTGTTACCTTAAAGCTCTGCTATTCAACTTATTTTGCTAGCATTATAAGTTCACCGGCATAGCTAATGGTAATTGTTTCCTTTTAAGATAATGGTCATTATGTACTCAATGTGAAGGTCGTGGAATGTAGCAGCAGATGATGAATATCTGTGGCAGTTGCAGTATACAACATTTTTTGGTTGTTCTGATGACAACAGTAAACCCATTAATGATGAATACAGCGTGGATGACTTTACTAGCGCACCTCATGTTGATTGGAAAGAGGAATTCAAGAGAGCATATGTAGGTGAGAATTGAGATGGTCTCTAAGTTCTGAACAATATATATATATATGGTTTGGTTGGATTTCCCTGCCATTAAGTGATTAACTTAAATTTTAGAAAAATGCTATCCATGTAACTTGAAGTTAGAATATTATTATGGTATCAAAGGCATATTCGTATATAGCCAAGGAATTTGTTAGTGAGAGTCAATCATAAATAGAGTTGGTGGGAGAAGAGGAGGGTAGACAATTGTTTCGTGGGTTTAGGCTTAAGTGAGAATGCTCGAGTGGGAGGTTCAAATACAGTGGGAATTATTGTATTCTTTTATCTTTTTATCTTTCAGTATTATTCTACTTATTTGGGTTCTGTCACTCATTTTCTTAATCAAACAAAATTTTCATAAGATGGTTTTGAATTTCATAATAATTATTTGTACTATGGCATTTGGAATGATAGGTAATTCTTTGGGGAGAAACACATCTGGAAGGGGATACTGCAAACACTGTGACACAATAGTTTCCTTTAGTACCTTGAGATGTCCCAATGATCATGGTAGAAATAAAAGTAAACAAATCAAGCCTTTGTCAATCAACCAGGTACTTTTTTCTATCCCTTTTTCCTAAGTCCATTTTGAGGGTCTTTTTGGTCAGCTTTCGCTCTTCGACTATCTTACTCTAGTTACATGAATCTCTTTCTCTCTCTCTCTCTTTCTCTGAACACAAGTGTAGTTTTTCTATTCTCCCCACCTCACTGAAATGAAACTGCCTCTGCTCATTTGAATGGTCACTTTTTATGAAACTGACTTCTTTTCAGGCTGATGATAGTATGGCTTTTTTTGCTATTGATTCTTTTAGAGGGGAAAAACACGTCCATGTTCTTTTGAAAGTATCTATAAAGATTTTATAGCTGCTTTTAAGTTTTTCAAGAATGCTTTTTTATGTAGGGTTGTAAGTAGGTTGATTGGAGTCATCTCATTGTCCAAAACTGATTCTGAATTGGCCTATCAATTCAAGAAAAATTAAAACTAGATGCTGAAACCAGCGTTGGTTAAGTTATAAAAGTATACAGATTCTTGAATTTTGCCATTTGTTTCAAAAATACCCCTGTTTGTTCAAAAGTTGCAATATTACTGATGACCTTTCATGAGCCCTTAGAGTAGAAATCCTTAAGAATTTCATATAAAATTTGGATGCAACCTGGAATGATGTAGTAGTGATGGCCTAGAATGAAATTGGATCATCATATTATTCCAAGTCCTAATTTTTGTTCGAAATTTTGAAAGATTGCTACAGGGTGGCTTTGAAACTTTTGAAAGAATAAGAGTGTTCTTTAAACAAAAGGTTCAGGGTATACTTTATAATTTATCCCCCAGTGTTTTGAAAAACAGAATGGACAATCTGACCAAAATCCACAAAAGAAGCAACCAAATGATAAAAAAAACAAAACTGACTGAAATATTTTTGGCTTTTGCTTTTGAACTAATCATGATGTGTATACTTTTTGTAGGTTGTTGAATATGTGTTAAATGGATCTTCAGAATTGATTTATTCTTCAGATAGTGAAACTGATTCAGATGAAGTTGTGATTTCTGAGTTTTGGGCTCTTCCAAAGTACTTGGGCAGTAGGCGCCCGAACTGA

mRNA sequence

ATGCAGACGAGCTCTGCTGCTTCGGCTGCACATCTCCTTGCTCAGGGTGTTGAAGCTGTTTTGCCTAAGCAAAAGAGAAATTCAGCAATTGTAGAATTTAAGAAAGCAATCGTTGCTCATAAGAGGCGTAGTAAAGCACATCAGGAAGAAAAAGGTTCTGCTCAAGTCCCTCAAGACGTTCTCCTCCACATATTCCGCTTTCTAGATATTCAATCTTTAGTTTCAGCTGGGCTAGTCTGCCGGTCGTGGAATGTAGCAGCAGATGATGAATATCTGTGGCAGTTGCAGTATACAACATTTTTTGGTTGTTCTGATGACAACAGTAAACCCATTAATGATGAATACAGCGTGGATGACTTTACTAGCGCACCTCATGTTGATTGGAAAGAGGAATTCAAGAGAGCATATGTAGGTAATTCTTTGGGGAGAAACACATCTGGAAGGGGATACTGCAAACACTGTGACACAATAGTTTCCTTTAGTACCTTGAGATGTCCCAATGATCATGGTAGAAATAAAAGTAAACAAATCAAGCCTTTGTCAATCAACCAGGTTGTTGAATATGTGTTAAATGGATCTTCAGAATTGATTTATTCTTCAGATAGTGAAACTGATTCAGATGAAGTTGTGATTTCTGAGTTTTGGGCTCTTCCAAAGTACTTGGGCAGTAGGCGCCCGAACTGA

Coding sequence (CDS)

ATGCAGACGAGCTCTGCTGCTTCGGCTGCACATCTCCTTGCTCAGGGTGTTGAAGCTGTTTTGCCTAAGCAAAAGAGAAATTCAGCAATTGTAGAATTTAAGAAAGCAATCGTTGCTCATAAGAGGCGTAGTAAAGCACATCAGGAAGAAAAAGGTTCTGCTCAAGTCCCTCAAGACGTTCTCCTCCACATATTCCGCTTTCTAGATATTCAATCTTTAGTTTCAGCTGGGCTAGTCTGCCGGTCGTGGAATGTAGCAGCAGATGATGAATATCTGTGGCAGTTGCAGTATACAACATTTTTTGGTTGTTCTGATGACAACAGTAAACCCATTAATGATGAATACAGCGTGGATGACTTTACTAGCGCACCTCATGTTGATTGGAAAGAGGAATTCAAGAGAGCATATGTAGGTAATTCTTTGGGGAGAAACACATCTGGAAGGGGATACTGCAAACACTGTGACACAATAGTTTCCTTTAGTACCTTGAGATGTCCCAATGATCATGGTAGAAATAAAAGTAAACAAATCAAGCCTTTGTCAATCAACCAGGTTGTTGAATATGTGTTAAATGGATCTTCAGAATTGATTTATTCTTCAGATAGTGAAACTGATTCAGATGAAGTTGTGATTTCTGAGTTTTGGGCTCTTCCAAAGTACTTGGGCAGTAGGCGCCCGAACTGA

Protein sequence

MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDVLLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDDFTSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKSKQIKPLSINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYLGSRRPN

Homology

[Close]

BLAST of HG10008941.1 vs. NCBI nr
Match: XP_038874450.1 (F-box protein At5g52880 isoform X2 [Benincasa hispida])

HSP 1 Score: 424.9 bits (1091), Expect = 4.5e-115
Identity = 208/227 (91.63%), Postives = 217/227 (95.59%), Query Frame = 0


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDV 60
           MQTSSAASAAHLLAQGVEA LPKQKRNSAIVEFKKA+VAHKRRSKAHQEEKGSAQ+PQDV
Sbjct: 1   MQTSSAASAAHLLAQGVEAALPKQKRNSAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDV 60

Query: 61  LLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDDF 120
           LLHIFRFLD+QSLVSAGLVCRSWNVAADDEYLWQLQYT FFGCSDDNSKPIND+ SVDDF
Sbjct: 61  LLHIFRFLDVQSLVSAGLVCRSWNVAADDEYLWQLQYTKFFGCSDDNSKPINDKDSVDDF 120

Query: 121 TSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKSKQIKPL 180
            SA HVDWKEEFK AY+ NSL RNT+GRGYC+HCDTIVS STLRCPNDHGRNK+KQIKPL
Sbjct: 121 ASARHVDWKEEFKSAYIVNSLRRNTNGRGYCRHCDTIVSSSTLRCPNDHGRNKNKQIKPL 180

Query: 181 SINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYLGSRRPN 228
           SINQVVEYVLNGS+ELIYSSDSETDSDEVVISEFWA PKYLGSRRPN
Sbjct: 181 SINQVVEYVLNGSTELIYSSDSETDSDEVVISEFWAFPKYLGSRRPN 227

[Close]

BLAST of HG10008941.1 vs. NCBI nr
Match: XP_038874449.1 (F-box protein At5g52880 isoform X1 [Benincasa hispida])

HSP 1 Score: 424.9 bits (1091), Expect = 4.5e-115
Identity = 208/227 (91.63%), Postives = 217/227 (95.59%), Query Frame = 0


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDV 60
           MQTSSAASAAHLLAQGVEA LPKQKRNSAIVEFKKA+VAHKRRSKAHQEEKGSAQ+PQDV
Sbjct: 63  MQTSSAASAAHLLAQGVEAALPKQKRNSAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDV 122

Query: 61  LLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDDF 120
           LLHIFRFLD+QSLVSAGLVCRSWNVAADDEYLWQLQYT FFGCSDDNSKPIND+ SVDDF
Sbjct: 123 LLHIFRFLDVQSLVSAGLVCRSWNVAADDEYLWQLQYTKFFGCSDDNSKPINDKDSVDDF 182

Query: 121 TSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKSKQIKPL 180
            SA HVDWKEEFK AY+ NSL RNT+GRGYC+HCDTIVS STLRCPNDHGRNK+KQIKPL
Sbjct: 183 ASARHVDWKEEFKSAYIVNSLRRNTNGRGYCRHCDTIVSSSTLRCPNDHGRNKNKQIKPL 242

Query: 181 SINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYLGSRRPN 228
           SINQVVEYVLNGS+ELIYSSDSETDSDEVVISEFWA PKYLGSRRPN
Sbjct: 243 SINQVVEYVLNGSTELIYSSDSETDSDEVVISEFWAFPKYLGSRRPN 289

[Close]

BLAST of HG10008941.1 vs. NCBI nr
Match: XP_008437546.1 (PREDICTED: F-box protein At5g52880 isoform X3 [Cucumis melo] >KAA0042586.1 F-box protein [Cucumis melo var. makuwa] >TYK05989.1 F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 407.5 bits (1046), Expect = 7.4e-110
Identity = 202/226 (89.38%), Postives = 210/226 (92.92%), Query Frame = 0


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDV 60
           MQTSSAASAA LLAQ VEA LPKQKRNS IVE+KKA+V HKRRSKAHQEEKGS Q+PQDV
Sbjct: 1   MQTSSAASAARLLAQAVEAALPKQKRNSVIVEYKKAMVVHKRRSKAHQEEKGSCQLPQDV 60

Query: 61  LLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDDF 120
           LLHIFRFLD+QSL SAGLVCRSWNVAADDEYLWQLQYTTFFGC DDNSKPIND+ S DDF
Sbjct: 61  LLHIFRFLDVQSLGSAGLVCRSWNVAADDEYLWQLQYTTFFGCPDDNSKPINDKDSEDDF 120

Query: 121 --TSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKSKQIK 180
             +S PHVDWKEEFK+AYVGNSLGRNT GRGYCKHCDTIVSFSTLRC NDHGRNK+KQIK
Sbjct: 121 ASSSTPHVDWKEEFKKAYVGNSLGRNTCGRGYCKHCDTIVSFSTLRCTNDHGRNKNKQIK 180

Query: 181 PLSINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYLGSR 225
           PLSINQVVEYVLNGSSELIYSSDSETDSDE VISEFWALPKYLGSR
Sbjct: 181 PLSINQVVEYVLNGSSELIYSSDSETDSDEDVISEFWALPKYLGSR 226

[Close]

BLAST of HG10008941.1 vs. NCBI nr
Match: XP_008437544.1 (PREDICTED: F-box protein At5g52880 isoform X1 [Cucumis melo])

HSP 1 Score: 407.5 bits (1046), Expect = 7.4e-110
Identity = 202/226 (89.38%), Postives = 210/226 (92.92%), Query Frame = 0


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDV 60
           MQTSSAASAA LLAQ VEA LPKQKRNS IVE+KKA+V HKRRSKAHQEEKGS Q+PQDV
Sbjct: 63  MQTSSAASAARLLAQAVEAALPKQKRNSVIVEYKKAMVVHKRRSKAHQEEKGSCQLPQDV 122

Query: 61  LLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDDF 120
           LLHIFRFLD+QSL SAGLVCRSWNVAADDEYLWQLQYTTFFGC DDNSKPIND+ S DDF
Sbjct: 123 LLHIFRFLDVQSLGSAGLVCRSWNVAADDEYLWQLQYTTFFGCPDDNSKPINDKDSEDDF 182

Query: 121 --TSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKSKQIK 180
             +S PHVDWKEEFK+AYVGNSLGRNT GRGYCKHCDTIVSFSTLRC NDHGRNK+KQIK
Sbjct: 183 ASSSTPHVDWKEEFKKAYVGNSLGRNTCGRGYCKHCDTIVSFSTLRCTNDHGRNKNKQIK 242

Query: 181 PLSINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYLGSR 225
           PLSINQVVEYVLNGSSELIYSSDSETDSDE VISEFWALPKYLGSR
Sbjct: 243 PLSINQVVEYVLNGSSELIYSSDSETDSDEDVISEFWALPKYLGSR 288

[Close]

BLAST of HG10008941.1 vs. NCBI nr
Match: XP_022922153.1 (F-box protein At5g52880 isoform X2 [Cucurbita moschata])

HSP 1 Score: 398.7 bits (1023), Expect = 3.4e-107
Identity = 198/227 (87.22%), Postives = 207/227 (91.19%), Query Frame = 0


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDV 60
           MQTSSA SAAHLLAQGVEA LPKQKRNSAIVEFKKA+VAHKRRSKA QE KGS+Q+PQDV
Sbjct: 1   MQTSSAVSAAHLLAQGVEASLPKQKRNSAIVEFKKAMVAHKRRSKARQEVKGSSQLPQDV 60

Query: 61  LLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDDF 120
           LLHIFRFLDI+SLVSAGLVCRSWN AADDEYLWQ QYTTFFGCSD+   PIND+ SVD  
Sbjct: 61  LLHIFRFLDIESLVSAGLVCRSWNAAADDEYLWQFQYTTFFGCSDE---PINDKDSVDGL 120

Query: 121 TSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKSKQIKPL 180
            S PHVDWKE FK AYVGNSL RN SGRGYCKHCDTIVSFSTLRCPNDHGRNK+KQIKPL
Sbjct: 121 ASTPHVDWKEAFKGAYVGNSLWRNRSGRGYCKHCDTIVSFSTLRCPNDHGRNKNKQIKPL 180

Query: 181 SINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYLGSRRPN 228
           SINQVVEYVL G+SELIYSSDS+TDSDEVVISEFWALPKYLG RRPN
Sbjct: 181 SINQVVEYVLTGTSELIYSSDSDTDSDEVVISEFWALPKYLGRRRPN 224

[Close]

BLAST of HG10008941.1 vs. ExPASy Swiss-Prot
Match: Q9FLX3 (F-box protein At5g52880 OS=Arabidopsis thaliana OX=3702 GN=At5g52880 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 7.1e-39
Identity = 106/229 (46.29%), Postives = 134/229 (58.52%), Query Frame = 0


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEK-GSAQVPQD 60
           + TS+A SAA+LL + VEAVLPKQK+N AIVEFK+A VA KRRSK  +EE      +PQD
Sbjct: 59  INTSAAVSAANLLLKSVEAVLPKQKKNLAIVEFKQAKVALKRRSKNREEEDIDIPSLPQD 118

Query: 61  VLLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDD 120
           +L+HIF FL+I SLVS+  V RSWN A  +  LWQ Q+   F     N K +        
Sbjct: 119 ILIHIFSFLEISSLVSSAQVSRSWNQATHENSLWQSQFDLHF-----NHKVL-------- 178

Query: 121 FTSAPHVDWKEEFKRAYV-GNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKS--KQ 180
                 +DW+E FK+AY+  NS     SGRGYC +CD+IV    LRC N   R KS  K 
Sbjct: 179 IRMQSDIDWREAFKKAYIAANSSEALRSGRGYCSYCDSIVWHENLRCLNKQCRLKSGNKP 238

Query: 181 IKPLSINQVVEYVLNGSSELIYSSDSETDS-DEVVISEFWAL---PKYL 222
           +  ++ +QVV Y+L      I SSD E++S DE      W L   P YL
Sbjct: 239 LDLITTHQVVNYLLG-----IESSDDESESDDEAFPGRLWKLSYVPDYL 269

[Close]

BLAST of HG10008941.1 vs. ExPASy Swiss-Prot
Match: Q5UPK8 (Putative F-box protein L127 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_L127 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.8e-05
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 58  QDVLLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEY 116
           ++++ HIF FLD+ S +    VCR W   +DDE LW L Y  FFG     +KPI D+Y
Sbjct: 7   EEMVYHIFCFLDLSSFIKCSRVCRKWRRISDDEKLWNL-YGEFFG----TNKPI-DQY 58

[Close]

BLAST of HG10008941.1 vs. ExPASy Swiss-Prot
Match: Q969U6 (F-box/WD repeat-containing protein 5 OS=Homo sapiens OX=9606 GN=FBXW5 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.0e-05
Identity = 25/88 (28.41%), Postives = 43/88 (48.86%), Query Frame = 0


Query: 49  EEKGSAQVPQDVLLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNS 108
           +E G+  +P  ++  IF  L    +++AGLVCR W   + DE+LW+ Q+  ++  + D  
Sbjct: 2   DEGGTPLLPDSLVYQIFLSLGPADVLAAGLVCRQWQAVSRDEFLWREQFYRYYQVARDVP 61

Query: 109 KPINDEYSVDDFTSAPHVDWKEEFKRAY 137
           +                + W EEF+R Y
Sbjct: 62  R------------HPAAMSWYEEFQRLY 77

[Close]

BLAST of HG10008941.1 vs. ExPASy Swiss-Prot
Match: Q4KLI9 (F-box/WD repeat-containing protein 5 OS=Rattus norvegicus OX=10116 GN=Fbxw5 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 5.1e-05
Identity = 25/88 (28.41%), Postives = 41/88 (46.59%), Query Frame = 0


Query: 49  EEKGSAQVPQDVLLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNS 108
           +E G   +P  ++  IF  L    +++AGLVCR W   + DE+LW+ Q+  ++  + D  
Sbjct: 2   DEGGMPLLPDSLVYQIFLSLGPADVLAAGLVCRQWQAVSRDEFLWREQFYRYYQVARDVP 61

Query: 109 KPINDEYSVDDFTSAPHVDWKEEFKRAY 137
           +                  W EEF+R Y
Sbjct: 62  R------------HPAATSWYEEFRRLY 77

[Close]

BLAST of HG10008941.1 vs. ExPASy Swiss-Prot
Match: Q9QXW2 (F-box/WD repeat-containing protein 5 OS=Mus musculus OX=10090 GN=Fbxw5 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 6.7e-05
Identity = 25/88 (28.41%), Postives = 41/88 (46.59%), Query Frame = 0


Query: 49  EEKGSAQVPQDVLLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNS 108
           +E G   +P  ++  IF  L    +++AGLVCR W   + DE+LW+ Q+  ++  + D  
Sbjct: 2   DEGGLPLLPDSLVYQIFLSLGPADVLAAGLVCRQWQAVSRDEFLWKEQFYRYYQVARDVP 61

Query: 109 KPINDEYSVDDFTSAPHVDWKEEFKRAY 137
           +                  W EEF+R Y
Sbjct: 62  R------------HPAATSWYEEFRRLY 77

[Close]

BLAST of HG10008941.1 vs. ExPASy TrEMBL
Match: A0A5A7TKV8 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00850 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.6e-110
Identity = 202/226 (89.38%), Postives = 210/226 (92.92%), Query Frame = 0


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDV 60
           MQTSSAASAA LLAQ VEA LPKQKRNS IVE+KKA+V HKRRSKAHQEEKGS Q+PQDV
Sbjct: 1   MQTSSAASAARLLAQAVEAALPKQKRNSVIVEYKKAMVVHKRRSKAHQEEKGSCQLPQDV 60

Query: 61  LLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDDF 120
           LLHIFRFLD+QSL SAGLVCRSWNVAADDEYLWQLQYTTFFGC DDNSKPIND+ S DDF
Sbjct: 61  LLHIFRFLDVQSLGSAGLVCRSWNVAADDEYLWQLQYTTFFGCPDDNSKPINDKDSEDDF 120

Query: 121 --TSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKSKQIK 180
             +S PHVDWKEEFK+AYVGNSLGRNT GRGYCKHCDTIVSFSTLRC NDHGRNK+KQIK
Sbjct: 121 ASSSTPHVDWKEEFKKAYVGNSLGRNTCGRGYCKHCDTIVSFSTLRCTNDHGRNKNKQIK 180

Query: 181 PLSINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYLGSR 225
           PLSINQVVEYVLNGSSELIYSSDSETDSDE VISEFWALPKYLGSR
Sbjct: 181 PLSINQVVEYVLNGSSELIYSSDSETDSDEDVISEFWALPKYLGSR 226

[Close]

BLAST of HG10008941.1 vs. ExPASy TrEMBL
Match: A0A1S3AUV1 (F-box protein At5g52880 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482926 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.6e-110
Identity = 202/226 (89.38%), Postives = 210/226 (92.92%), Query Frame = 0


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDV 60
           MQTSSAASAA LLAQ VEA LPKQKRNS IVE+KKA+V HKRRSKAHQEEKGS Q+PQDV
Sbjct: 63  MQTSSAASAARLLAQAVEAALPKQKRNSVIVEYKKAMVVHKRRSKAHQEEKGSCQLPQDV 122

Query: 61  LLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDDF 120
           LLHIFRFLD+QSL SAGLVCRSWNVAADDEYLWQLQYTTFFGC DDNSKPIND+ S DDF
Sbjct: 123 LLHIFRFLDVQSLGSAGLVCRSWNVAADDEYLWQLQYTTFFGCPDDNSKPINDKDSEDDF 182

Query: 121 --TSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKSKQIK 180
             +S PHVDWKEEFK+AYVGNSLGRNT GRGYCKHCDTIVSFSTLRC NDHGRNK+KQIK
Sbjct: 183 ASSSTPHVDWKEEFKKAYVGNSLGRNTCGRGYCKHCDTIVSFSTLRCTNDHGRNKNKQIK 242

Query: 181 PLSINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYLGSR 225
           PLSINQVVEYVLNGSSELIYSSDSETDSDE VISEFWALPKYLGSR
Sbjct: 243 PLSINQVVEYVLNGSSELIYSSDSETDSDEDVISEFWALPKYLGSR 288

[Close]

BLAST of HG10008941.1 vs. ExPASy TrEMBL
Match: A0A1S3AUE6 (F-box protein At5g52880 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103482926 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.6e-110
Identity = 202/226 (89.38%), Postives = 210/226 (92.92%), Query Frame = 0


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDV 60
           MQTSSAASAA LLAQ VEA LPKQKRNS IVE+KKA+V HKRRSKAHQEEKGS Q+PQDV
Sbjct: 1   MQTSSAASAARLLAQAVEAALPKQKRNSVIVEYKKAMVVHKRRSKAHQEEKGSCQLPQDV 60

Query: 61  LLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDDF 120
           LLHIFRFLD+QSL SAGLVCRSWNVAADDEYLWQLQYTTFFGC DDNSKPIND+ S DDF
Sbjct: 61  LLHIFRFLDVQSLGSAGLVCRSWNVAADDEYLWQLQYTTFFGCPDDNSKPINDKDSEDDF 120

Query: 121 --TSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKSKQIK 180
             +S PHVDWKEEFK+AYVGNSLGRNT GRGYCKHCDTIVSFSTLRC NDHGRNK+KQIK
Sbjct: 121 ASSSTPHVDWKEEFKKAYVGNSLGRNTCGRGYCKHCDTIVSFSTLRCTNDHGRNKNKQIK 180

Query: 181 PLSINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYLGSR 225
           PLSINQVVEYVLNGSSELIYSSDSETDSDE VISEFWALPKYLGSR
Sbjct: 181 PLSINQVVEYVLNGSSELIYSSDSETDSDEDVISEFWALPKYLGSR 226

[Close]

BLAST of HG10008941.1 vs. ExPASy TrEMBL
Match: A0A6J1IBY0 (F-box protein At5g52880 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111471558 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.7e-107
Identity = 198/227 (87.22%), Postives = 207/227 (91.19%), Query Frame = 0


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDV 60
           MQTSSA SAAHLLAQGVEA LPKQKRNSAIVEFKKA+VAHKRRSKA QE KGS+Q+PQDV
Sbjct: 1   MQTSSAVSAAHLLAQGVEASLPKQKRNSAIVEFKKAMVAHKRRSKARQEVKGSSQLPQDV 60

Query: 61  LLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDDF 120
           LLHIFRFLDI+SLVSAGLVCRSW+ AADDEYLWQ QYTTFFGCSD+   PINDE SVD  
Sbjct: 61  LLHIFRFLDIESLVSAGLVCRSWSAAADDEYLWQFQYTTFFGCSDE---PINDEDSVDGL 120

Query: 121 TSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKSKQIKPL 180
            S PHVDWKE FKRAYVGNSL RN  GRGYCKHCDTIVSFSTLRCPNDHGRNK++QIKPL
Sbjct: 121 ASTPHVDWKEAFKRAYVGNSLWRNRYGRGYCKHCDTIVSFSTLRCPNDHGRNKNRQIKPL 180

Query: 181 SINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYLGSRRPN 228
           SINQVVEYVLNG SELIYSSDS+TDSDEVVISEFWALPKYLG RRPN
Sbjct: 181 SINQVVEYVLNGISELIYSSDSDTDSDEVVISEFWALPKYLGRRRPN 224

[Close]

BLAST of HG10008941.1 vs. ExPASy TrEMBL
Match: A0A6J1I7M6 (F-box protein At5g52880 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471558 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.7e-107
Identity = 198/227 (87.22%), Postives = 207/227 (91.19%), Query Frame = 0


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDV 60
           MQTSSA SAAHLLAQGVEA LPKQKRNSAIVEFKKA+VAHKRRSKA QE KGS+Q+PQDV
Sbjct: 63  MQTSSAVSAAHLLAQGVEASLPKQKRNSAIVEFKKAMVAHKRRSKARQEVKGSSQLPQDV 122

Query: 61  LLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDDF 120
           LLHIFRFLDI+SLVSAGLVCRSW+ AADDEYLWQ QYTTFFGCSD+   PINDE SVD  
Sbjct: 123 LLHIFRFLDIESLVSAGLVCRSWSAAADDEYLWQFQYTTFFGCSDE---PINDEDSVDGL 182

Query: 121 TSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKSKQIKPL 180
            S PHVDWKE FKRAYVGNSL RN  GRGYCKHCDTIVSFSTLRCPNDHGRNK++QIKPL
Sbjct: 183 ASTPHVDWKEAFKRAYVGNSLWRNRYGRGYCKHCDTIVSFSTLRCPNDHGRNKNRQIKPL 242

Query: 181 SINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYLGSRRPN 228
           SINQVVEYVLNG SELIYSSDS+TDSDEVVISEFWALPKYLG RRPN
Sbjct: 243 SINQVVEYVLNGISELIYSSDSDTDSDEVVISEFWALPKYLGRRRPN 286

[Close]

BLAST of HG10008941.1 vs. TAIR 10
Match: AT5G52880.1 (F-box family protein )

HSP 1 Score: 162.2 bits (409), Expect = 5.1e-40
Identity = 106/229 (46.29%), Postives = 134/229 (58.52%), Query Frame = 0


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEK-GSAQVPQD 60
           + TS+A SAA+LL + VEAVLPKQK+N AIVEFK+A VA KRRSK  +EE      +PQD
Sbjct: 59  INTSAAVSAANLLLKSVEAVLPKQKKNLAIVEFKQAKVALKRRSKNREEEDIDIPSLPQD 118

Query: 61  VLLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDD 120
           +L+HIF FL+I SLVS+  V RSWN A  +  LWQ Q+   F     N K +        
Sbjct: 119 ILIHIFSFLEISSLVSSAQVSRSWNQATHENSLWQSQFDLHF-----NHKVL-------- 178

Query: 121 FTSAPHVDWKEEFKRAYV-GNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKS--KQ 180
                 +DW+E FK+AY+  NS     SGRGYC +CD+IV    LRC N   R KS  K 
Sbjct: 179 IRMQSDIDWREAFKKAYIAANSSEALRSGRGYCSYCDSIVWHENLRCLNKQCRLKSGNKP 238

Query: 181 IKPLSINQVVEYVLNGSSELIYSSDSETDS-DEVVISEFWAL---PKYL 222
           +  ++ +QVV Y+L      I SSD E++S DE      W L   P YL
Sbjct: 239 LDLITTHQVVNYLLG-----IESSDDESESDDEAFPGRLWKLSYVPDYL 269

[Close]

BLAST of HG10008941.1 vs. TAIR 10
Match: AT5G45360.1 (F-box family protein )

HSP 1 Score: 45.8 bits (107), Expect = 5.3e-05
Identity = 25/64 (39.06%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 40  HKRRSKAHQEEKG-SAQVPQDVLLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYT 99
           +K ++ A + E G    VP ++  HI +FL  + LVS  LVC+  N AA DE LW+  Y 
Sbjct: 57  NKDKTDAKRIESGVFTNVPTELFRHILKFLSSEDLVSCSLVCKFLNFAAADESLWRRLYC 116

Query: 100 TFFG 103
             +G
Sbjct: 117 IRWG 120

The following BLAST results are available for this feature:

BLAST of HG10008941.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874450.1	4.5e-115	91.63	F-box protein At5g52880 isoform X2 [Benincasa hispida]	[more]
XP_038874449.1	4.5e-115	91.63	F-box protein At5g52880 isoform X1 [Benincasa hispida]	[more]
XP_008437546.1	7.4e-110	89.38	PREDICTED: F-box protein At5g52880 isoform X3 [Cucumis melo] >KAA0042586.1 F-box...	[more]
XP_008437544.1	7.4e-110	89.38	PREDICTED: F-box protein At5g52880 isoform X1 [Cucumis melo]	[more]
XP_022922153.1	3.4e-107	87.22	F-box protein At5g52880 isoform X2 [Cucurbita moschata]	[more]

BLAST of HG10008941.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLX3	7.1e-39	46.29	F-box protein At5g52880 OS=Arabidopsis thaliana OX=3702 GN=At5g52880 PE=2 SV=1	[more]
Q5UPK8	1.8e-05	44.83	Putative F-box protein L127 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIM...	[more]
Q969U6	3.0e-05	28.41	F-box/WD repeat-containing protein 5 OS=Homo sapiens OX=9606 GN=FBXW5 PE=1 SV=1	[more]
Q4KLI9	5.1e-05	28.41	F-box/WD repeat-containing protein 5 OS=Rattus norvegicus OX=10116 GN=Fbxw5 PE=2...	[more]
Q9QXW2	6.7e-05	28.41	F-box/WD repeat-containing protein 5 OS=Mus musculus OX=10090 GN=Fbxw5 PE=1 SV=1	[more]

BLAST of HG10008941.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TKV8	3.6e-110	89.38	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00850 ...	[more]
A0A1S3AUV1	3.6e-110	89.38	F-box protein At5g52880 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482926 PE=4 ...	[more]
A0A1S3AUE6	3.6e-110	89.38	F-box protein At5g52880 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103482926 PE=4 ...	[more]
A0A6J1IBY0	1.7e-107	87.22	F-box protein At5g52880 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111471558 P...	[more]
A0A6J1I7M6	1.7e-107	87.22	F-box protein At5g52880 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471558 P...	[more]

BLAST of HG10008941.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52880.1	5.1e-40	46.29	F-box family protein	[more]
AT5G45360.1	5.3e-05	39.06	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 56..96 e-value: 4.8E-8 score: 42.7
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 56..97 e-value: 1.2E-12 score: 47.5
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 50..96 score: 11.19311
None	No IPR available	GENE3D	1.20.1280.50		coord: 38..140 e-value: 3.4E-14 score: 54.5
None	No IPR available	PANTHER	PTHR47744	OS05G0526300 PROTEIN	coord: 1..221
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 55..136

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10008941	HG10008941	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10008941.1-cds	HG10008941.1-cds-Chr06:919027..919180	CDS
HG10008941.1-cds	HG10008941.1-cds-Chr06:919316..919403	CDS
HG10008941.1-cds	HG10008941.1-cds-Chr06:919575..919744	CDS
HG10008941.1-cds	HG10008941.1-cds-Chr06:920178..920317	CDS
HG10008941.1-cds	HG10008941.1-cds-Chr06:921228..921359	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10008941.1	HG10008941.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding