HG10006381.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006381.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S ribosomal protein L18
Location	Chr07: 17893036 .. 17895188 (-)
Sequence length	588
RNA-Seq Expression	HG10006381.1
Synteny	HG10006381.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATGCGTTTTCCTTTCATTACAGGGGATCGATCTTGTAGCAGGAGGCAAGAGTAAGAAGACCAAAAGGACCGCCCCCAAGTCCGATGATATCTACCTCAAACTCCTTGTCAAGGTTGGTTTTTCTAATCATCATTGGTTCCGCTCTGCTCACGAGCTCTTGCTTTCATGTGGCTTTTTCTTAGAGTATGGAGATAAATTCTTAGGGCTTCCTTTTTTCTTAATGAAAAAGTACGTTGTGATTTAAATTATGATATAGTGAATGGAGAATGTAGTTTCAAATTTAATTCTGCAAGCATTATTTTGAACTTCCTTTTTCTTGCGTTTGAAATCTCGTTGTTTGATTTGAAAGTAGAGGAACATTTATATGCAGTGATGATATCTGTGTATCCCAGCTCATTATGAGATCTTTCGTAGGTCAAGGAATGAACTATTTCCACATTTATCTGAGTCCAGGTTTAAACTTAAATGTTCTTGTTCAATTTGAACTCTGAAGCAGACTATATCGTTCAGGCCATTAGTAAACCGTGATTTCAAAAGCTTAGTTTTGGAACCTCTTTGTTTGATTTGAAAGTAGAGGAACATTTATATGCAGTGATGATATCTGTGTATCCCAGCTCATTATGAGATCTTTCGTAGGTCAAGGAATGGACTATTTCCACATTTATCTGAGCCCAGGTTTAGATTTAAATGTTCTTGTTCAATTTGAACTATGAAGCAGAATATATCGTTCATCATAGGCCGTTAATAAACCTTGATTTCAAAAGTTTAGTTTTGGAACCTCTTTTGTACATATGGGGTCAATATTTGAATTTCTTTATTTATATTTTGATTGGAATTCGATTGTTATCTAAGTTGCAATGATGAAATATGTGATACCCAGCTCATTATGAGACTTTTTGTAGGTCAAGGACTGGACTAAATCCACATATTTATCTGAGCTCACCATATTCTACCCTAAAAGTTTCTTTCATTTCTTTTTGAATTTGAAAGTAATAACTGAACCCTCGGCCCATCCTTTTGATGTTTCCGTCAGTTGCTATATTTTCTCTTCATTTTTGAAACGATGTCTGGACTTTTCAATATCAAATTAAGGCTACCTTTCATCCTTATGGAGAGATAGGTTATTTTTCCCTGTGATGCTTCAAAAACCATGCTAATACTGATCACACAATGATTGATCTTCATTTTCAACTCTCTGAGGGAACTAGCCTACAGTCCTAAATCAATTATTTCCAGAGGAGTTTTGTGTTTGTTTGCATATCGATTATTGTAACCTTTTCCCCCAAGCTCAGTAGTGTGTTATTTGGATTGCTTAAATGACCGATCTTTAATCTTGTTTACTGAATTCAGCTGTACCGGTTTCTTGTTCGAAGAACTGGAAGCAATTTCAATGCAGTGGTCCTCAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCGATTTCACTATCCAGACTTATCAAGTACATGAAGGGCAAGGTTTGTGCTTCTATTATGCATTACACGTCCTTTACATTTTGATATCAGCTTTGCAGGATTGTTATTTTCCGTTGTCTAAATTCTCTGGTGGTTAACATGGTGTAGGAAGGAAAAATTGCCGTCCTTGTTGGAACCGTGACAGATGACATTCGCGTTTATGAAGTCCCAGCTTTGAAAGTTACAGCCTTGAGGTTTACTGAGACCGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGTTTGACATTCGATCAGCTTGCATTGAGGGCTCCTCTTGGCCAGAATACGGTACGATTGCAAGCCCCATCTTTCACACTCAAACACAACCTCTGTTATGCCGAAGCAACTGTGATGCTTATAAAATGCTCCTGAATGTTATATCTGCCTATTTTATTTAGCTATGTCCTATATTTTATCAGTTCATGCTTATCTTAGAAGCATCAGTCTGTCAAACAACATGAATGAATGCTTAGATTCAAACTTAATGTTCTGTTAATTCTGCTTTTGAAGGTTCTTCTTCGTGGACCGAAGAACTCTCGTGAAGCCGTGAAGCACTTCGGTCCTGCTCCTGGTGTGCCTCACAGCCACACGAAACCGTACGTTAGGTCGAAGGGAAGAAAATTTGAGAGAGCAAGAGGAAAGAGAAACAGCAGGGGATTCAGAGTTTAA

mRNA sequence

ATGAGATGCGTTTTCCTTTCATTACAGGGGATCGATCTTGTAGCAGGAGGCAAGAGTAAGAAGACCAAAAGGACCGCCCCCAAGTCCGATGATATCTACCTCAAACTCCTTGTCAAGCTGTACCGGTTTCTTGTTCGAAGAACTGGAAGCAATTTCAATGCAGTGGTCCTCAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCGATTTCACTATCCAGACTTATCAAGTACATGAAGGGCAAGGAAGGAAAAATTGCCGTCCTTGTTGGAACCGTGACAGATGACATTCGCGTTTATGAAGTCCCAGCTTTGAAAGTTACAGCCTTGAGGTTTACTGAGACCGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGTTTGACATTCGATCAGCTTGCATTGAGGGCTCCTCTTGGCCAGAATACGGTTCTTCTTCGTGGACCGAAGAACTCTCGTGAAGCCGTGAAGCACTTCGGTCCTGCTCCTGGTGTGCCTCACAGCCACACGAAACCGTACGTTAGGTCGAAGGGAAGAAAATTTGAGAGAGCAAGAGGAAAGAGAAACAGCAGGGGATTCAGAGTTTAA

Coding sequence (CDS)

ATGAGATGCGTTTTCCTTTCATTACAGGGGATCGATCTTGTAGCAGGAGGCAAGAGTAAGAAGACCAAAAGGACCGCCCCCAAGTCCGATGATATCTACCTCAAACTCCTTGTCAAGCTGTACCGGTTTCTTGTTCGAAGAACTGGAAGCAATTTCAATGCAGTGGTCCTCAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCGATTTCACTATCCAGACTTATCAAGTACATGAAGGGCAAGGAAGGAAAAATTGCCGTCCTTGTTGGAACCGTGACAGATGACATTCGCGTTTATGAAGTCCCAGCTTTGAAAGTTACAGCCTTGAGGTTTACTGAGACCGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGTTTGACATTCGATCAGCTTGCATTGAGGGCTCCTCTTGGCCAGAATACGGTTCTTCTTCGTGGACCGAAGAACTCTCGTGAAGCCGTGAAGCACTTCGGTCCTGCTCCTGGTGTGCCTCACAGCCACACGAAACCGTACGTTAGGTCGAAGGGAAGAAAATTTGAGAGAGCAAGAGGAAAGAGAAACAGCAGGGGATTCAGAGTTTAA

Protein sequence

MRCVFLSLQGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPPISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV

Homology

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BLAST of HG10006381.1 vs. NCBI nr
Match: XP_038891230.1 (60S ribosomal protein L18-3 [Benincasa hispida])

HSP 1 Score: 358.2 bits (918), Expect = 4.4e-95
Identity = 182/186 (97.85%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 10  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPP 69
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 70  ISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 129
           ISLSRLIKYMKGKE K+AV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKYMKGKEEKVAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 130 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 189
           FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 190 SRGFRV 196
           SRGFRV
Sbjct: 182 SRGFRV 187

[Close]

BLAST of HG10006381.1 vs. NCBI nr
Match: XP_008454015.1 (PREDICTED: 60S ribosomal protein L18-3 [Cucumis melo] >KAA0048039.1 60S ribosomal protein L18-3 [Cucumis melo var. makuwa] >TYJ96497.1 60S ribosomal protein L18-3 [Cucumis melo var. makuwa])

HSP 1 Score: 357.8 bits (917), Expect = 5.8e-95
Identity = 182/186 (97.85%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 10  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPP 69
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 70  ISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 129
           ISLSRLIKYMKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 130 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 189
           FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 190 SRGFRV 196
           SRG+RV
Sbjct: 182 SRGYRV 187

[Close]

BLAST of HG10006381.1 vs. NCBI nr
Match: XP_004144773.1 (60S ribosomal protein L18-3 [Cucumis sativus] >KGN60965.1 hypothetical protein Csa_021179 [Cucumis sativus])

HSP 1 Score: 357.5 bits (916), Expect = 7.6e-95
Identity = 181/186 (97.31%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 10  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPP 69
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 70  ISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 129
           ISLSRLIKYM GKEG+IAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKYMNGKEGRIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 130 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 189
           FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 190 SRGFRV 196
           SRG+RV
Sbjct: 182 SRGYRV 187

[Close]

BLAST of HG10006381.1 vs. NCBI nr
Match: KAG7021075.1 (60S ribosomal protein L18-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 356.7 bits (914), Expect = 1.3e-94
Identity = 181/186 (97.31%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 10  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPP 69
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 70  ISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 129
           ISLSRLIK+MKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 130 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 189
           FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 190 SRGFRV 196
           SRG+RV
Sbjct: 182 SRGYRV 187

[Close]

BLAST of HG10006381.1 vs. NCBI nr
Match: XP_022965965.1 (60S ribosomal protein L18-3 [Cucurbita maxima] >KAG6599207.1 60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 356.3 bits (913), Expect = 1.7e-94
Identity = 181/186 (97.31%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 10  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPP 69
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 70  ISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 129
           ISLSRLIK+MKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 130 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 189
           FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 190 SRGFRV 196
           SRG+RV
Sbjct: 182 SRGYRV 187

[Close]

BLAST of HG10006381.1 vs. ExPASy Swiss-Prot
Match: Q940B0 (60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 4.9e-89
Identity = 162/186 (87.10%), Postives = 179/186 (96.24%), Query Frame = 0


Query: 10  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPP 69
           GIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAV+LKRLFMSKVNK P
Sbjct: 2   GIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAP 61

Query: 70  ISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 129
           +SLSRL+++M GK+ KIAVLVGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLT
Sbjct: 62  LSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLT 121

Query: 130 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 189
           FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR 
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKRK 181

Query: 190 SRGFRV 196
           SRGF+V
Sbjct: 182 SRGFKV 187

[Close]

BLAST of HG10006381.1 vs. ExPASy Swiss-Prot
Match: P42791 (60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2)

HSP 1 Score: 327.4 bits (838), Expect = 1.1e-88
Identity = 161/186 (86.56%), Postives = 177/186 (95.16%), Query Frame = 0


Query: 10  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPP 69
           GIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN V+LKRLFMSKVNK P
Sbjct: 2   GIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAP 61

Query: 70  ISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 129
           +SLSRL+++M GKE KIAVLVGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLT
Sbjct: 62  LSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLT 121

Query: 130 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 189
           FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR 
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRK 181

Query: 190 SRGFRV 196
           SRGF+V
Sbjct: 182 SRGFKV 187

[Close]

BLAST of HG10006381.1 vs. ExPASy Swiss-Prot
Match: O65729 (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 1.9e-85
Identity = 159/184 (86.41%), Postives = 175/184 (95.11%), Query Frame = 0


Query: 12  DLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPPIS 71
           DL AGGK+KKTKRT+PKS+DIYLKLLVKLYRFLVRRT SNFNAV+LKRLFMSKVN+PP+S
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 72  LSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFD 131
           LSRLIKYM+GKEGKI V+VG VTDDIRVY+VP +KVTAL+FTETARARI+KAGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

Query: 132 QLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSR 191
           QLALR PL  +TVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRSKGRKFE+ARG+R SR
Sbjct: 121 QLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSR 180

Query: 192 GFRV 196
           GFRV
Sbjct: 181 GFRV 183

[Close]

BLAST of HG10006381.1 vs. ExPASy Swiss-Prot
Match: O22254 (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A PE=3 SV=3)

HSP 1 Score: 296.6 bits (758), Expect = 2.1e-79
Identity = 149/187 (79.68%), Postives = 167/187 (89.30%), Query Frame = 0


Query: 10  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPP 69
           GIDL+AGGKSKKTKRT PKSDD+YLKLLVK  R+LVRRT S FNAV+LKRLFMSKVNK P
Sbjct: 2   GIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKAP 61

Query: 70  ISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 129
           +SLSRL++YM GK+GKIAV+VGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECLT
Sbjct: 62  LSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLT 121

Query: 130 FDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 189
           FDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K E ARG+R
Sbjct: 122 FDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGRR 181

Query: 190 NSRGFRV 196
            SRGF+V
Sbjct: 182 RSRGFKV 188

[Close]

BLAST of HG10006381.1 vs. ExPASy Swiss-Prot
Match: Q95342 (60S ribosomal protein L18 OS=Sus scrofa OX=9823 GN=RPL18 PE=1 SV=4)

HSP 1 Score: 248.4 bits (633), Expect = 6.5e-65
Identity = 128/189 (67.72%), Postives = 151/189 (79.89%), Query Frame = 0


Query: 8   LQGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNK 67
           LQG+D +   K +K +R  PKS DIYL+LLVKLYRFL RRT S FN VVLKRLFMS+ N+
Sbjct: 7   LQGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNR 66

Query: 68  PPISLSRLIKYMK--GKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGG 127
           PP+SLSR+I+ MK  G+EGK AV+VGT+TDD+RV EVP LKV ALR +  AR+RI KAGG
Sbjct: 67  PPLSLSRMIRKMKLPGREGKTAVVVGTITDDVRVQEVPKLKVCALRVSSRARSRILKAGG 126

Query: 128 ECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERAR 187
           + LTFDQLAL +P G  TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFERAR
Sbjct: 127 KILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERAR 186

Query: 188 GKRNSRGFR 195
           G+R SRG++
Sbjct: 187 GRRASRGYK 194

[Close]

BLAST of HG10006381.1 vs. ExPASy TrEMBL
Match: A0A5A7U3L4 (60S ribosomal protein L18-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001430 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.8e-95
Identity = 182/186 (97.85%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 10  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPP 69
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 70  ISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 129
           ISLSRLIKYMKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 130 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 189
           FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 190 SRGFRV 196
           SRG+RV
Sbjct: 182 SRGYRV 187

[Close]

BLAST of HG10006381.1 vs. ExPASy TrEMBL
Match: A0A1S3BYV3 (60S ribosomal protein L18-3 OS=Cucumis melo OX=3656 GN=LOC103494561 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.8e-95
Identity = 182/186 (97.85%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 10  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPP 69
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 70  ISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 129
           ISLSRLIKYMKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 130 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 189
           FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 190 SRGFRV 196
           SRG+RV
Sbjct: 182 SRGYRV 187

[Close]

BLAST of HG10006381.1 vs. ExPASy TrEMBL
Match: A0A0A0LFX7 (Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G032220 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.7e-95
Identity = 181/186 (97.31%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 10  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPP 69
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 70  ISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 129
           ISLSRLIKYM GKEG+IAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKYMNGKEGRIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 130 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 189
           FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 190 SRGFRV 196
           SRG+RV
Sbjct: 182 SRGYRV 187

[Close]

BLAST of HG10006381.1 vs. ExPASy TrEMBL
Match: A0A6J1HQ85 (60S ribosomal protein L18-3 OS=Cucurbita maxima OX=3661 GN=LOC111465687 PE=3 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 8.1e-95
Identity = 181/186 (97.31%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 10  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPP 69
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 70  ISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 129
           ISLSRLIK+MKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 130 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 189
           FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 190 SRGFRV 196
           SRG+RV
Sbjct: 182 SRGYRV 187

[Close]

BLAST of HG10006381.1 vs. ExPASy TrEMBL
Match: A0A6J1DTG6 (60S ribosomal protein L18-3 OS=Momordica charantia OX=3673 GN=LOC111023330 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.4e-94
Identity = 180/186 (96.77%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 10  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPP 69
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKPP
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 70  ISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 129
           ISLSRLIK+MKGKE KIAV+VGTVTDDIRVYEVPALKVTAL+FTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECLT 121

Query: 130 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 189
           FDQLAL+APLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 190 SRGFRV 196
           SRGFRV
Sbjct: 182 SRGFRV 187

[Close]

BLAST of HG10006381.1 vs. TAIR 10
Match: AT5G27850.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 328.6 bits (841), Expect = 3.5e-90
Identity = 162/186 (87.10%), Postives = 179/186 (96.24%), Query Frame = 0


Query: 10  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPP 69
           GIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAV+LKRLFMSKVNK P
Sbjct: 2   GIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAP 61

Query: 70  ISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 129
           +SLSRL+++M GK+ KIAVLVGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLT
Sbjct: 62  LSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLT 121

Query: 130 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 189
           FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR 
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKRK 181

Query: 190 SRGFRV 196
           SRGF+V
Sbjct: 182 SRGFKV 187

[Close]

BLAST of HG10006381.1 vs. TAIR 10
Match: AT3G05590.1 (ribosomal protein L18 )

HSP 1 Score: 327.4 bits (838), Expect = 7.8e-90
Identity = 161/186 (86.56%), Postives = 177/186 (95.16%), Query Frame = 0


Query: 10  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPP 69
           GIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN V+LKRLFMSKVNK P
Sbjct: 2   GIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAP 61

Query: 70  ISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 129
           +SLSRL+++M GKE KIAVLVGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLT
Sbjct: 62  LSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLT 121

Query: 130 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 189
           FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR 
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRK 181

Query: 190 SRGFRV 196
           SRGF+V
Sbjct: 182 SRGFKV 187

[Close]

BLAST of HG10006381.1 vs. TAIR 10
Match: AT2G47570.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.6e-55
Identity = 106/135 (78.52%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 62  MSKVNKPPISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIE 121
           MSKVNK P+SLSRL++YM GK+GKIAV+VGTVTDD+R+ +VPAL VTALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 122 KAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRK 181
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 182 FERARGKRNSRGFRV 196
            E ARG+R SRGF+V
Sbjct: 121 IEIARGRRRSRGFKV 135

[Close]

BLAST of HG10006381.1 vs. TAIR 10
Match: AT2G47570.2 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.6e-55
Identity = 106/135 (78.52%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 62  MSKVNKPPISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIE 121
           MSKVNK P+SLSRL++YM GK+GKIAV+VGTVTDD+R+ +VPAL VTALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 122 KAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRK 181
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 182 FERARGKRNSRGFRV 196
            E ARG+R SRGF+V
Sbjct: 121 IEIARGRRRSRGFKV 135

The following BLAST results are available for this feature:

BLAST of HG10006381.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891230.1	4.4e-95	97.85	60S ribosomal protein L18-3 [Benincasa hispida]	[more]
XP_008454015.1	5.8e-95	97.85	PREDICTED: 60S ribosomal protein L18-3 [Cucumis melo] >KAA0048039.1 60S ribosoma...	[more]
XP_004144773.1	7.6e-95	97.31	60S ribosomal protein L18-3 [Cucumis sativus] >KGN60965.1 hypothetical protein C...	[more]
KAG7021075.1	1.3e-94	97.31	60S ribosomal protein L18-3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022965965.1	1.7e-94	97.31	60S ribosomal protein L18-3 [Cucurbita maxima] >KAG6599207.1 60S ribosomal prote...	[more]

BLAST of HG10006381.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940B0	4.9e-89	87.10	60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1	[more]
P42791	1.1e-88	86.56	60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2	[more]
O65729	1.9e-85	86.41	60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV...	[more]
O22254	2.1e-79	79.68	Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A P...	[more]
Q95342	6.5e-65	67.72	60S ribosomal protein L18 OS=Sus scrofa OX=9823 GN=RPL18 PE=1 SV=4	[more]

BLAST of HG10006381.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3L4	2.8e-95	97.85	60S ribosomal protein L18-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BYV3	2.8e-95	97.85	60S ribosomal protein L18-3 OS=Cucumis melo OX=3656 GN=LOC103494561 PE=3 SV=1	[more]
A0A0A0LFX7	3.7e-95	97.31	Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_...	[more]
A0A6J1HQ85	8.1e-95	97.31	60S ribosomal protein L18-3 OS=Cucurbita maxima OX=3661 GN=LOC111465687 PE=3 SV=...	[more]
A0A6J1DTG6	1.4e-94	96.77	60S ribosomal protein L18-3 OS=Momordica charantia OX=3673 GN=LOC111023330 PE=3 ...	[more]

BLAST of HG10006381.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27850.1	3.5e-90	87.10	Ribosomal protein L18e/L15 superfamily protein	[more]
AT3G05590.1	7.8e-90	86.56	ribosomal protein L18	[more]
AT2G47570.1	1.6e-55	78.52	Ribosomal protein L18e/L15 superfamily protein	[more]
AT2G47570.2	1.6e-55	78.52	Ribosomal protein L18e/L15 superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF17135	Ribosomal_L18	coord: 10..195 e-value: 6.7E-95 score: 315.8
None	No IPR available	GENE3D	3.100.10.10		coord: 9..195 e-value: 1.4E-99 score: 333.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..195
None	No IPR available	PANTHER	PTHR10934:SF19	60S RIBOSOMAL PROTEIN L18-1-RELATED	coord: 10..194
IPR000039	Ribosomal protein L18e	PANTHER	PTHR10934	60S RIBOSOMAL PROTEIN L18	coord: 10..194
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	52080	Ribosomal proteins L15p and L18e	coord: 28..147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10006381	HG10006381	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10006381.1-cds	HG10006381.1-cds-Chr07:17893036..17893194	CDS
HG10006381.1-cds	HG10006381.1-cds-Chr07:17893417..17893599	CDS
HG10006381.1-cds	HG10006381.1-cds-Chr07:17893705..17893833	CDS
HG10006381.1-cds	HG10006381.1-cds-Chr07:17895072..17895188	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10006381.1	HG10006381.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003729	mRNA binding