HG10006020.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10006020.1
TypemRNA
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionAcyl-[acyl-carrier-protein] desaturase
LocationChr07: 11635534 .. 11638079 (-)
Sequence length204
RNA-Seq ExpressionHG10006020.1
SyntenyHG10006020.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTCAAGTTCAATCCAGTAGTGAACCTTCCATGTCTCAATCCCCCTTCCAAACACCAACGCCATCGCAGATCTCCCACTCTTCTCATGGCCTCCACTCTACACTCTCTCTCCAAGTCAGTATCTAACATTTCCCTTTTTTCAATCTCATTCGAACTTCATTTTGTTCTTTACTCTCTTTCACTGCTTGATCAATTTGTTTTTATGCTACTGTCTATTGATTCGACTTACATTTTTCTTTTCTTTTCAATGTATTGTGGTTTTATTCCTTGAATCTTTACCCATTTTTAATCTGGAATTACTTATTTCTGTTGATATTGCCTTCCTCTGAATTCGAAAATCAACTTGCGTAGAGAGAGGATTTGGTTTTTTTTTTTTTTTCTTTTGGGTTTAGGGAGTTTTTGTGATTTTGTACTATAAATGTTGTGGAATCCACCTCCATCTTGATGTGATGTAATTTTGGTCTGACGAAGAGGCATTTTTCATAGATTGTTATTCTATCTGTTTCTGTTCTAATAATTTGCTTTTATTCTTGCCTTGATGCTATCGTTTTATATTTTGGAGTTTTTAGCCAAACTTTGTAAATAGAATAGCTTTTTCTAAAATCACTTTTTTAAGTTTTTAAAAATTGGCTATTACTTTCTAAATCGTTTCTAGAATAAAGAGCTAATAAACTAAGAAAATATAAGTTTGTTTTTCTTTTTCCTACAAATATTGAGAACTGTTTGCATGAGCTTAATTATTCAGTCTGTGGCTTGCTTTATTTTTGAATATTTTCTGACTTAAGCAAACATAAGCTTGTTGTCTTATAATTTGGTAGCTGGATCTTGGACTTTATTCAAAACATTGATGTTGTGGTCGGTTTTTCCTTATTTAGAGGAAGGAAGAATATGAAAAACTCTGATTGTTATGGTGCATTTATAGTTGTTTTATGGATATTGTGTTCTTAATGTTTATTCTGTTTATACCCTTTCCAATTGGGTAGATATTTGTAGTATCTCTTTTTAGTCATGTGGACAAATTCTAGAGCGCCATTCGATTTAGATATACAATGAAGAAGTTGTTATGGATTTGCAAGTTGCAAGTAAATTAGGAGACCAGAAAATTCAAGAGGAAAAGAGTAAGGGAGGGGTCGGTTATACGTTAAGCTCAGGATTTCCACACAAAAATGGCGGCTTATCTAAATCCCACATTGTTGCCTTTTCTCTATGTTTCGTCTTCCTTCTTCTATGTACCCTTCTTTTCAAACCACTGATGCGCCATGAAAACCGTCTGACCCTCCTCTGCTTCTTCATCTTCACCTTCATTTCCTCCCGCCAGCTTCACCACCAACTCTGTCGCCACTACCAGGTCTGTCTTCTTTCTACAATTTCCTTTTTCGAGGGTTTCTATGAAATTTATGTTCAAACACTCGCAAGTTGGGAATTAGGTCGGCTGTAGAGCGGACGTGAAAATTGGTGTTAAGCTTCTCTAGTTCATGGGTTCATGGTTATATATAATACAGAGGATTGCTGAAATTGATGAGAAGGTTTTTGTTGGATTATGTTGCTCCTTGCGATTATAAAAATGGTTAACAGTTGATAAATTATGTATTGCATCTGCATTCATAAACGAACTATTGAAAATTGTTAGTGACTAGATTAATTAAAGTGATCTCCTTAAGATTAGATTTCTCTTCTTCTGCTTGAAATTTGTGCGAGCAATTGTCTTCCAAAATAGTGTGTAAGTTAGACTTGCAATGGAACCTGATTAATGCAACTTGTACTTAGAAGTTAGAACTGAACTACAGTTGGAAACAATATTGGAACACAGAGAATGTTAAATCACCCATTGTTACCAATCCTACAACTTAAGCTTTTGAGTCAATTTATGATTTAATATGGTATTAGACCCATGCCCTTGACTTAGTCATGTGGGTAAAATCCTTGGGTGCCCGAACAAAGAAATGGTGATCTTGGAAGATGTAATCATGGGGTGATTCGTGGTTGAACTCTATCGGATTGGCAATGTGCTCCAATAAAAAGAGTTGGCCTAGATAAGAGTTAAATAGATAGATGACTATTTGAGGGGAGGCTCAGTGAGATTTTGTTTGAGGGGAGGATTGTTGGGAGTGATATTAAATCACCAGTTGACCCAAAAACTTAAGCTGATGGGTACTCATATCAATAGTTTAATACTCTCCCTCACTTGTGGGCTTTAAAATTTGTAGAAGACCCAACAAGTAAAAATTAATATTAATTAAGGAGGAAAATGATCATATAGAGGTTCAAACACATGACTTTCGACTCTGATACCATGTTAAATCATCAATTGACCCAAAAGCTTAAGTTGATGGATAAGGAAAAATTTAATTATCTCAATAGTTTAATAGAGGATGAAGAAAAAAAGGAGAATGGAACCCTGGAGAATTTTGCTTATTTTGCATCAAATATAATGCAAGATTTACTTGCTTTTATAGATATGTTCTGACATATTTGAACAATTATGATGATCTACCTCCCAAACAGCTACAATTGATTGGAATAGATGAGATTGGTCTGTAA

mRNA sequence

ATGGCTCTCAAGTTCAATCCAGTAGTGAACCTTCCATGTCTCAATCCCCCTTCCAAACACCAACGCCATCGCAGATCTCCCACTCTTCTCATGGCCTCCACTCTACACTCTCTCTCCAAATATGTTCTGACATATTTGAACAATTATGATGATCTACCTCCCAAACAGCTACAATTGATTGGAATAGATGAGATTGGTCTGTAA

Coding sequence (CDS)

ATGGCTCTCAAGTTCAATCCAGTAGTGAACCTTCCATGTCTCAATCCCCCTTCCAAACACCAACGCCATCGCAGATCTCCCACTCTTCTCATGGCCTCCACTCTACACTCTCTCTCCAAATATGTTCTGACATATTTGAACAATTATGATGATCTACCTCCCAAACAGCTACAATTGATTGGAATAGATGAGATTGGTCTGTAA

Protein sequence

MALKFNPVVNLPCLNPPSKHQRHRRSPTLLMASTLHSLSKYVLTYLNNYDDLPPKQLQLIGIDEIGL
Homology
[Close]
BLAST of HG10006020.1 vs. NCBI nr
Match: XP_023520913.1 (stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG7029917.1 Stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.8 bits (138), Expect = 4.3e-05
Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 0 

Query: 1  MALKFNPVVNLPCLNPPSKHQRHRRSPTLLMASTLHSLSKYVLTYLNNYDDLPPKQLQL 60
          MAL+ NP V  P    PS+H R RRSPTLLMASTLHSLSK        Y   PP+++ +
Sbjct: 1  MALQLNPAVKFPSHTLPSRHHRRRRSPTLLMASTLHSLSKSTEGTKKPY--FPPREVHV 57

[Close]
BLAST of HG10006020.1 vs. NCBI nr
Match: XP_022996724.1 (stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 56.6 bits (135), Expect = 9.5e-05
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 0 

Query: 1  MALKFNPVVNLPCLNPPSKHQRHRRSPTLLMASTLHSLSKYVLTYLNNYDDLPPKQLQL 60
          MAL+ NP V  P    PS+H R RRSPT+LMASTLHSLSK        Y   PP+++ +
Sbjct: 1  MALQLNPAVKFPSHTLPSRHHRRRRSPTVLMASTLHSLSKSTEGTKKPY--FPPREVHV 57

[Close]
BLAST of HG10006020.1 vs. NCBI nr
Match: XP_022933162.1 (stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-04
Identity = 31/59 (52.54%), Postives = 36/59 (61.02%), Query Frame = 0 

Query: 1  MALKFNPVVNLPCLNPPSKHQRHRRSPTLLMASTLHSLSKYVLTYLNNYDDLPPKQLQL 60
          MAL  NP V  P    PS+H R RRSPTLLMASTLHSLSK        Y   PP+++ +
Sbjct: 1  MALHLNPAVKFPSHPLPSRHHRRRRSPTLLMASTLHSLSKSTEGTKKPY--FPPREVHV 57

[Close]
BLAST of HG10006020.1 vs. NCBI nr
Match: XP_038890737.1 (stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-04
Identity = 28/38 (73.68%), Postives = 29/38 (76.32%), Query Frame = 0 

Query: 2  ALKFNPVVNLPCLNPPSKHQRHRRSPTLLMASTLHSLS 40
          ALK NP +NL   N P  H RHRRSPTLLMASTLHSLS
Sbjct: 3  ALKLNPPLNLSSHNLPFNHHRHRRSPTLLMASTLHSLS 40

[Close]
BLAST of HG10006020.1 vs. NCBI nr
Match: TYK07730.1 (stearoyl-(acyl-carrier-protein) 9-desaturase [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 2.8e-04
Identity = 32/59 (54.24%), Postives = 37/59 (62.71%), Query Frame = 0 

Query: 1  MALKFNPVVNLPCLNPPSKHQRHRRSPTLLMASTLHSLSKYVLTYLNNYDDLPPKQLQL 60
          MALK +P V LP  N PS    HRRSPTLLMASTLHSLSK        Y   PP+++ +
Sbjct: 1  MALKLSPPVKLPSHNLPSIRLPHRRSPTLLMASTLHSLSKSTEGTKKPY--FPPREVHV 57

[Close]
BLAST of HG10006020.1 vs. ExPASy TrEMBL
Match: A0A6J1K9I0 (Acyl-[acyl-carrier-protein] desaturase OS=Cucurbita maxima OX=3661 GN=LOC111491882 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.6e-05
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 0 

Query: 1  MALKFNPVVNLPCLNPPSKHQRHRRSPTLLMASTLHSLSKYVLTYLNNYDDLPPKQLQL 60
          MAL+ NP V  P    PS+H R RRSPT+LMASTLHSLSK        Y   PP+++ +
Sbjct: 1  MALQLNPAVKFPSHTLPSRHHRRRRSPTVLMASTLHSLSKSTEGTKKPY--FPPREVHV 57

[Close]
BLAST of HG10006020.1 vs. ExPASy TrEMBL
Match: A0A6J1EZ03 (Acyl-[acyl-carrier-protein] desaturase OS=Cucurbita moschata OX=3662 GN=LOC111440011 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.0e-05
Identity = 31/59 (52.54%), Postives = 36/59 (61.02%), Query Frame = 0 

Query: 1  MALKFNPVVNLPCLNPPSKHQRHRRSPTLLMASTLHSLSKYVLTYLNNYDDLPPKQLQL 60
          MAL  NP V  P    PS+H R RRSPTLLMASTLHSLSK        Y   PP+++ +
Sbjct: 1  MALHLNPAVKFPSHPLPSRHHRRRRSPTLLMASTLHSLSKSTEGTKKPY--FPPREVHV 57

[Close]
BLAST of HG10006020.1 vs. ExPASy TrEMBL
Match: A0A5D3C8R0 (Acyl-[acyl-carrier-protein] desaturase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G001630 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 32/59 (54.24%), Postives = 37/59 (62.71%), Query Frame = 0 

Query: 1  MALKFNPVVNLPCLNPPSKHQRHRRSPTLLMASTLHSLSKYVLTYLNNYDDLPPKQLQL 60
          MALK +P V LP  N PS    HRRSPTLLMASTLHSLSK        Y   PP+++ +
Sbjct: 1  MALKLSPPVKLPSHNLPSIRLPHRRSPTLLMASTLHSLSKSTEGTKKPY--FPPREVHV 57

[Close]
BLAST of HG10006020.1 vs. ExPASy TrEMBL
Match: A0A5A7U7M5 (Acyl-[acyl-carrier-protein] desaturase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00270 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 32/59 (54.24%), Postives = 37/59 (62.71%), Query Frame = 0 

Query: 1  MALKFNPVVNLPCLNPPSKHQRHRRSPTLLMASTLHSLSKYVLTYLNNYDDLPPKQLQL 60
          MALK +P V LP  N PS    HRRSPTLLMASTLHSLSK        Y   PP+++ +
Sbjct: 1  MALKLSPPVKLPSHNLPSIRLPHRRSPTLLMASTLHSLSKSTEGTKKPY--FPPREVHV 57

[Close]
BLAST of HG10006020.1 vs. ExPASy TrEMBL
Match: A0A1S3B4Y7 (Acyl-[acyl-carrier-protein] desaturase OS=Cucumis melo OX=3656 GN=LOC103485868 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 32/59 (54.24%), Postives = 37/59 (62.71%), Query Frame = 0 

Query: 1  MALKFNPVVNLPCLNPPSKHQRHRRSPTLLMASTLHSLSKYVLTYLNNYDDLPPKQLQL 60
          MALK +P V LP  N PS    HRRSPTLLMASTLHSLSK        Y   PP+++ +
Sbjct: 1  MALKLSPPVKLPSHNLPSIRLPHRRSPTLLMASTLHSLSKSTEGTKKPY--FPPREVHV 57

The following BLAST results are available for this feature:
BLAST of HG10006020.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023520913.14.3e-0552.54stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic-like [Cucurbita pepo... [more]
XP_022996724.19.5e-0550.85stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic-like [Cucurbita maxi... [more]
XP_022933162.11.2e-0452.54stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic-like [Cucurbita mosc... [more]
XP_038890737.11.2e-0473.68stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic-like [Benincasa hisp... [more]
TYK07730.12.8e-0454.24stearoyl-(acyl-carrier-protein) 9-desaturase [Cucumis melo var. makuwa][more]
BLAST of HG10006020.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10006020.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K9I04.6e-0550.85Acyl-[acyl-carrier-protein] desaturase OS=Cucurbita maxima OX=3661 GN=LOC1114918... [more]
A0A6J1EZ036.0e-0552.54Acyl-[acyl-carrier-protein] desaturase OS=Cucurbita moschata OX=3662 GN=LOC11144... [more]
A0A5D3C8R01.3e-0454.24Acyl-[acyl-carrier-protein] desaturase OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A5A7U7M51.3e-0454.24Acyl-[acyl-carrier-protein] desaturase OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A1S3B4Y71.3e-0454.24Acyl-[acyl-carrier-protein] desaturase OS=Cucumis melo OX=3656 GN=LOC103485868 P... [more]
BLAST of HG10006020.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
HG10006020HG10006020gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
HG10006020.1-cdsHG10006020.1-cds-Chr07:11635534..11635618CDS
HG10006020.1-cdsHG10006020.1-cds-Chr07:11637961..11638079CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
HG10006020.1HG10006020.1-proteinpolypeptide