HG10006006.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006006.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr07: 11302328 .. 11302813 (+)
Sequence length	486
RNA-Seq Expression	HG10006006.1
Synteny	HG10006006.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCATTTCTTTCCTGCTCGAGAAAGACAAAGCTCTGATTCAGAACTCATCGGAAGAAGGTAAGAAATCCTCCCTTGCGTTCGTTCGAACTCAGAACCCGACGGAAATGGGGAATGAGTCAAATGTGAATGCGGTTTGGGATAAAGGCAATCGCAAGTTGCCTTTTGAGCCTCATGTGAACAGACGTTTCGAGTTCCCAATAGATGGCGCCAAATTAGATCTTCAAAAAAGGACCAATGATTTTATTTCAAAAAATAATCAACGGTCCTCTTCTGCCAATAAAAAAGATGGTTTGGTTGCCTCAAGCTCCAAGTTGATTAATTCCTCCTTAAATGAAGCCCCTTTTTCAAATGAAAAAGCAGGTAGCTTTAACATCAAGAACAAGGTAGTTAATGCCAGCAATAACTTTCTCTCTCCAGGAAAAGTAACCAACGGGAATACTCATAATTCAGCAAATTTGTCTCCAACGGTTCATTGTCCATAG

mRNA sequence

ATGCCCATTTCTTTCCTGCTCGAGAAAGACAAAGCTCTGATTCAGAACTCATCGGAAGAAGGTAAGAAATCCTCCCTTGCGTTCGTTCGAACTCAGAACCCGACGGAAATGGGGAATGAGTCAAATGTGAATGCGGTTTGGGATAAAGGCAATCGCAAGTTGCCTTTTGAGCCTCATGTGAACAGACGTTTCGAGTTCCCAATAGATGGCGCCAAATTAGATCTTCAAAAAAGGACCAATGATTTTATTTCAAAAAATAATCAACGGTCCTCTTCTGCCAATAAAAAAGATGGTTTGGTTGCCTCAAGCTCCAAGTTGATTAATTCCTCCTTAAATGAAGCCCCTTTTTCAAATGAAAAAGCAGGTAGCTTTAACATCAAGAACAAGGTAGTTAATGCCAGCAATAACTTTCTCTCTCCAGGAAAAGTAACCAACGGGAATACTCATAATTCAGCAAATTTGTCTCCAACGGTTCATTGTCCATAG

Coding sequence (CDS)

ATGCCCATTTCTTTCCTGCTCGAGAAAGACAAAGCTCTGATTCAGAACTCATCGGAAGAAGGTAAGAAATCCTCCCTTGCGTTCGTTCGAACTCAGAACCCGACGGAAATGGGGAATGAGTCAAATGTGAATGCGGTTTGGGATAAAGGCAATCGCAAGTTGCCTTTTGAGCCTCATGTGAACAGACGTTTCGAGTTCCCAATAGATGGCGCCAAATTAGATCTTCAAAAAAGGACCAATGATTTTATTTCAAAAAATAATCAACGGTCCTCTTCTGCCAATAAAAAAGATGGTTTGGTTGCCTCAAGCTCCAAGTTGATTAATTCCTCCTTAAATGAAGCCCCTTTTTCAAATGAAAAAGCAGGTAGCTTTAACATCAAGAACAAGGTAGTTAATGCCAGCAATAACTTTCTCTCTCCAGGAAAAGTAACCAACGGGAATACTCATAATTCAGCAAATTTGTCTCCAACGGTTCATTGTCCATAG

Protein sequence

MPISFLLEKDKALIQNSSEEGKKSSLAFVRTQNPTEMGNESNVNAVWDKGNRKLPFEPHVNRRFEFPIDGAKLDLQKRTNDFISKNNQRSSSANKKDGLVASSSKLINSSLNEAPFSNEKAGSFNIKNKVVNASNNFLSPGKVTNGNTHNSANLSPTVHCP

Homology

The following BLAST results are available for this feature:

BLAST of HG10006006.1 vs.


Match Name	E-value	Identity	Description

BLAST of HG10006006.1 vs.


Match Name	E-value	Identity	Description

BLAST of HG10006006.1 vs.


Match Name	E-value	Identity	Description

BLAST of HG10006006.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..98

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10006006	HG10006006	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10006006.1-cds	HG10006006.1-cds-Chr07:11302328..11302813	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10006006.1	HG10006006.1-protein	polypeptide