Sequences
The following sequences are available for this feature:
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGTTGGGCAGGGTCTGATTGTGAGGAACGAATTTGGTGATGTTGTGATTGCTCGAGCCATGTTCCGTCAAGGCTATCTTGATGCTGAAGCCAACGAGATCTTTGCCATTCTTATGGGTTTGCAGCTTGGTGTGGAGTTTGTTTGGAGTGCTTACCAGGTGGAGTATGATGCTAAAAGAGTGAATAACTCTCTCATCTCTTTCGATTTCTCTTTATCTCAATATGAAACTATATATGCAGAAGCTTTGCCTTACTTAATTGTCCGAGTATGCTGGGTTTAA
ATGAGTGTTGGGCAGGGTCTGATTGTGAGGAACGAATTTGGTGATGTTGTGATTGCTCGAGCCATGTTCCGTCAAGGCTATCTTGATGCTGAAGCCAACGAGATCTTTGCCATTCTTATGGGTTTGCAGCTTGGTGTGGAGTTTGTTTGGAGTGCTTACCAGGTGGAGTATGATGCTAAAAGAGTGAATAACTCTCTCATCTCTTTCGATTTCTCTTTATCTCAATATGAAACTATATATGCAGAAGCTTTGCCTTACTTAATTGTCCGAGTATGCTGGGTTTAA
ATGAGTGTTGGGCAGGGTCTGATTGTGAGGAACGAATTTGGTGATGTTGTGATTGCTCGAGCCATGTTCCGTCAAGGCTATCTTGATGCTGAAGCCAACGAGATCTTTGCCATTCTTATGGGTTTGCAGCTTGGTGTGGAGTTTGTTTGGAGTGCTTACCAGGTGGAGTATGATGCTAAAAGAGTGAATAACTCTCTCATCTCTTTCGATTTCTCTTTATCTCAATATGAAACTATATATGCAGAAGCTTTGCCTTACTTAATTGTCCGAGTATGCTGGGTTTAA
MSVGQGLIVRNEFGDVVIARAMFRQGYLDAEANEIFAILMGLQLGVEFVWSAYQVEYDAKRVNNSLISFDFSLSQYETIYAEALPYLIVRVCWV
Homology
BLAST of HG10004129.1 vs. ExPASy TrEMBL
Match:
A0A1Q3CNA3 (RVT_3 domain-containing protein/zf-RVT domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_25184 PE=4 SV=1)
HSP 1 Score: 53.5 bits (127), Expect = 5.4e-04
Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 0
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A1Q3CNA3 5.4e-04 36.84 RVT_3 domain-containing protein/zf-RVT domain-containing protein OS=Cephalotus f... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
A T G A G T G T T G G G C A G G G T C T G A T T G T G A G G A A C G A A T T T G G T G A T G T T G T G A T T G C T C G A G C C A T G T T C C G T C A A G G C T A T C T T G A T G C T G A A G C C A A C G A G A T C T T T G C C A T T C T T A T G G G T T T G C A G C T T G G T G T G G A G T T T G T T T G G A G T G C T T A C C A G G T G G A G T A T G A T G C T A A A A G A G T G A A T A A C T C T C T C A T C T C T T T C G A T T T C T C T T T A T C T C A A T A T G A A A C T A T A T A T G C A G A A G C T T T G C C T T A C T T A A T T G T C C G A G T A T G C T G G G T T T A A 20 40 60 80 100 120 140 160 180 200 220 240 260 280 Expect = 5.6E-5 / Score = 22.9 Sequence PF13456
IPR Term IPR Description Source Source Term Source Description Alignment
IPR002156 Ribonuclease H domain PFAM PF13456 RVT_3 coord: 4..66
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name Unique Name Type
HG10004129 HG10004129 gene
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Type
HG10004129.1-cds HG10004129.1-cds-Chr08:13969319..13969603 CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Type
HG10004129.1 HG10004129.1-protein polypeptide
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676 nucleic acid binding
molecular_function
GO:0004523 RNA-DNA hybrid ribonuclease activity
