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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAAGTGGAGAAATGGAAGAAAAGGAAGATTTGGGTCGTCTTTAATTCCAGTTTCTTCAAAAGGGTTGGCGATTCTTTTACCAATAAAATGACTTTGGAGTTTTGGGTCATGGGCATTGATGGATTCTCGACGGCTTTCAAGTTTTCGAGGAGAAGAGGGGTTATGGCGCTATGGCTGGCATTCTATTGGTTTATAGGCGATCGATTAATTGCGTCTTGTAGATGA mRNA sequence ATGGAAGTGGAGAAATGGAAGAAAAGGAAGATTTGGGTCGTCTTTAATTCCAGTTTCTTCAAAAGGGTTGGCGATTCTTTTACCAATAAAATGACTTTGGAGTTTTGGGTCATGGGCATTGATGGATTCTCGACGGCTTTCAAGTTTTCGAGGAGAAGAGGGGTTATGGCGCTATGGCTGGCATTCTATTGGTTTATAGGCGATCGATTAATTGCGTCTTGTAGATGA Coding sequence (CDS) ATGGAAGTGGAGAAATGGAAGAAAAGGAAGATTTGGGTCGTCTTTAATTCCAGTTTCTTCAAAAGGGTTGGCGATTCTTTTACCAATAAAATGACTTTGGAGTTTTGGGTCATGGGCATTGATGGATTCTCGACGGCTTTCAAGTTTTCGAGGAGAAGAGGGGTTATGGCGCTATGGCTGGCATTCTATTGGTTTATAGGCGATCGATTAATTGCGTCTTGTAGATGA Protein sequence MEVEKWKKRKIWVVFNSSFFKRVGDSFTNKMTLEFWVMGIDGFSTAFKFSRRRGVMALWLAFYWFIGDRLIASCR
Homology
BLAST of HG10004121.1 vs. NCBI nr
Match: KGN46050.1 (hypothetical protein Csa_004804 [Cucumis sativus]) HSP 1 Score: 122.5 bits (306), Expect = 1.6e-24 Identity = 55/74 (74.32%), Postives = 65/74 (87.84%), Query Frame = 0
Query: 1 MEVEKWKKRKIWVVFNSSFFKRVGDSFTNKMTLEFWVMGIDGFSTAFKFSRRRGVMALWL 60
MEVEKWKKR IWVVFNS+F KRV DSFTN++ +EFWV+GI GFSTAFK +RR+ V+A+WL
Sbjct: 36 MEVEKWKKRTIWVVFNSNFRKRVVDSFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWL 95
Query: 61 AFYWFIGDRLIASC 75
AFYW +GDRL ASC
Sbjct: 96 AFYWLVGDRLTASC 109
BLAST of HG10004121.1 vs. NCBI nr
Match: KAG7016354.1 (hypothetical protein SDJN02_21462, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 86.3 bits (212), Expect = 1.2e-13 Identity = 44/75 (58.67%), Postives = 51/75 (68.00%), Query Frame = 0
Query: 1 MEVEKWKKRKIWVVFNSSFFKRVGDSFTNKMTLEFWVMGIDGFSTAFKFSRRRGVMALWL 60
MEVEK KKRK+ VVFNSSF KR+GD TN MT+E W++ + GFS A K +RR G
Sbjct: 43 MEVEKGKKRKVRVVFNSSFRKRIGDFSTNNMTIEVWIIAVCGFSMAVKLARRGGC----- 102
Query: 61 AFYWFIGDRLIASCR 76
W IGDRLI SCR
Sbjct: 103 ---WLIGDRLIESCR 109
BLAST of HG10004121.1 vs. ExPASy TrEMBL
Match: A0A0A0K8K0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046280 PE=4 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 7.6e-25 Identity = 55/74 (74.32%), Postives = 65/74 (87.84%), Query Frame = 0
Query: 1 MEVEKWKKRKIWVVFNSSFFKRVGDSFTNKMTLEFWVMGIDGFSTAFKFSRRRGVMALWL 60
MEVEKWKKR IWVVFNS+F KRV DSFTN++ +EFWV+GI GFSTAFK +RR+ V+A+WL
Sbjct: 36 MEVEKWKKRTIWVVFNSNFRKRVVDSFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWL 95
Query: 61 AFYWFIGDRLIASC 75
AFYW +GDRL ASC
Sbjct: 96 AFYWLVGDRLTASC 109
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN46050.1 | 1.6e-24 | 74.32 | hypothetical protein Csa_004804 [Cucumis sativus] | [more] |
| KAG7016354.1 | 1.2e-13 | 58.67 | hypothetical protein SDJN02_21462, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0K8K0 | 7.6e-25 | 74.32 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046280 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| HG10004121 | HG10004121 | gene |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| HG10004121.1-cds | HG10004121.1-cds-Chr08:13894868..13895095 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| HG10004121.1 | HG10004121.1-protein | polypeptide |
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