HG10004060.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004060.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Prolamin_like domain-containing protein
Location	Chr08: 13278696 .. 13279097 (+)
Sequence length	402
RNA-Seq Expression	HG10004060.1
Synteny	HG10004060.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGGGAAATAATAACACAATGGGAGCATTAGTGATTCTCTTATTGACAATAAACTTGGCAACCTTAGTTCAACCTTCCAGGGTAAACGACGACTTCAATTCACCGATATGGGATGGATGGGTAGATGAGGATAGAGGAATAACTCTACGACCGTGTTTGGATAGAATGAAGAGTGCAAAATGTCAAGTAGAACTTTATAATTACTACTTCAATATAAGCAAGAAGGAATTGGATCTAAATTGTTGTGTCTTCGTCAAAGTCATGGGGAAGAAGTGTGCACGAGCTTTTGCTAGTTGGTACAAGTTTCCTGGTTTGGAAATCTACGAGCCTAATCCTATGAAAGTTTATATCAATTGTGCTAGAAGACTTGGTGCTCTTCCACCCACGCCATTTTAA

mRNA sequence

ATGGCAAAGGGAAATAATAACACAATGGGAGCATTAGTGATTCTCTTATTGACAATAAACTTGGCAACCTTAGTTCAACCTTCCAGGGTAAACGACGACTTCAATTCACCGATATGGGATGGATGGGTAGATGAGGATAGAGGAATAACTCTACGACCGTGTTTGGATAGAATGAAGAGTGCAAAATGTCAAGTAGAACTTTATAATTACTACTTCAATATAAGCAAGAAGGAATTGGATCTAAATTGTTGTGTCTTCGTCAAAGTCATGGGGAAGAAGTGTGCACGAGCTTTTGCTAGTTGGTACAAGTTTCCTGGTTTGGAAATCTACGAGCCTAATCCTATGAAAGTTTATATCAATTGTGCTAGAAGACTTGGTGCTCTTCCACCCACGCCATTTTAA

Coding sequence (CDS)

ATGGCAAAGGGAAATAATAACACAATGGGAGCATTAGTGATTCTCTTATTGACAATAAACTTGGCAACCTTAGTTCAACCTTCCAGGGTAAACGACGACTTCAATTCACCGATATGGGATGGATGGGTAGATGAGGATAGAGGAATAACTCTACGACCGTGTTTGGATAGAATGAAGAGTGCAAAATGTCAAGTAGAACTTTATAATTACTACTTCAATATAAGCAAGAAGGAATTGGATCTAAATTGTTGTGTCTTCGTCAAAGTCATGGGGAAGAAGTGTGCACGAGCTTTTGCTAGTTGGTACAAGTTTCCTGGTTTGGAAATCTACGAGCCTAATCCTATGAAAGTTTATATCAATTGTGCTAGAAGACTTGGTGCTCTTCCACCCACGCCATTTTAA

Protein sequence

MAKGNNNTMGALVILLLTINLATLVQPSRVNDDFNSPIWDGWVDEDRGITLRPCLDRMKSAKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCARAFASWYKFPGLEIYEPNPMKVYINCARRLGALPPTPF

Homology

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BLAST of HG10004060.1 vs. NCBI nr
Match: KAA0046835.1 (hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA0046840.1 hypothetical protein E6C27_scaffold216G001400 [Cucumis melo var. makuwa] >KAA0065932.1 hypothetical protein E6C27_scaffold10942G00010 [Cucumis melo var. makuwa] >TYK04499.1 hypothetical protein E5676_scaffold409G001130 [Cucumis melo var. makuwa] >TYK14838.1 hypothetical protein E5676_scaffold6575G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 224.6 bits (571), Expect = 5.2e-55
Identity = 102/125 (81.60%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 9   MGALVILLLTINLATLVQPSRVNDDFNSPIWDGWVDEDRGITLRPCLDRMKSAKCQVELY 68
           M A+VILL  INL+ LVQ S V++D+NSPIWDGWVDEDRG TLRPCLDRM+SAKCQVELY
Sbjct: 1   MRAIVILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELY 60

Query: 69  NYYFNISKKELDLNCCVFVKVMGKKCARAFASWYKFPGLEIYEPNPMKVYINCARRLGAL 128
           NYYFNISKKELDLNCCVFVKVMGKKCA+AF  WY+FPGLEIYEPNPMKVY NC  RL A 
Sbjct: 61  NYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAP 120

Query: 129 PPTPF 134
           PP PF
Sbjct: 121 PPAPF 125

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BLAST of HG10004060.1 vs. NCBI nr
Match: KAG6578867.1 (hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221.5 bits (563), Expect = 4.4e-54
Identity = 100/125 (80.00%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 9   MGALVILLLTINLATLVQPSRVNDDFNSPIWDGWVDEDRGITLRPCLDRMKSAKCQVELY 68
           MGA+VILLL INLA L QPS  +DD+NSPIWD WVDEDRGI LRPCLD MKSAKCQVELY
Sbjct: 1   MGAMVILLLAINLAFLAQPSTADDDYNSPIWDRWVDEDRGINLRPCLDMMKSAKCQVELY 60

Query: 69  NYYFNISKKELDLNCCVFVKVMGKKCARAFASWYKFPGLEIYEPNPMKVYINCARRLGAL 128
           NYYFNISKKELDLNCCVFVKVMGK+CARAFA W++FP  E++E NPMKVY NC  RL AL
Sbjct: 61  NYYFNISKKELDLNCCVFVKVMGKRCARAFAGWFRFPEFEVFELNPMKVYKNCVGRLDAL 120

Query: 129 PPTPF 134
           PP PF
Sbjct: 121 PPAPF 125

[Close]

BLAST of HG10004060.1 vs. NCBI nr
Match: KAA0046841.1 (hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK04493.1 hypothetical protein E5676_scaffold409G001070 [Cucumis melo var. makuwa])

HSP 1 Score: 218.8 bits (556), Expect = 2.9e-53
Identity = 101/135 (74.81%), Postives = 109/135 (80.74%), Query Frame = 0


Query: 1   MAKGNNNTMGALVILLLTINLATLVQPSR--VNDDFNSPIWDGWVDEDRGITLRPCLDRM 60
           MA G N   G L ILLL +NLA LV PS   V+DD+NSPIW+GWVDEDR   LRPCLD M
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  KSAKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCARAFASWYKFPGLEIYEPNPMKVY 120
           KSAKCQV+LYNYYFNISKKELDL CCVFVK+MGK CA AFA WY+FPGLE+YEPNPM VY
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 INCARRLGALPPTPF 134
            NC  RL ALPPTPF
Sbjct: 121 NNCVGRLQALPPTPF 135

[Close]

BLAST of HG10004060.1 vs. NCBI nr
Match: KAE8646662.1 (hypothetical protein Csa_004797, partial [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 2.6e-46
Identity = 89/116 (76.72%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 1   MAKGNNNTMGALVILLLTINLATLVQPSRVNDDFNSPIWDGWVDEDRGITLRPCLDRMKS 60
           MA    N M A++ILL TINLA LVQP  V++D+NS IW+ W+DEDR  TLRPCLDRM+S
Sbjct: 26  MANIKTNAMRAMLILLSTINLAKLVQPYGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRS 85

Query: 61  AKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCARAFASWYKFPGLEIYEPNPMK 117
           AKCQVELYNYYFNISK+ELDLNCCVFVKVMGKKCA+AF  WY+FPGLEIYEPNPMK
Sbjct: 86  AKCQVELYNYYFNISKEELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMK 141

[Close]

BLAST of HG10004060.1 vs. NCBI nr
Match: KAG6575254.1 (hypothetical protein SDJN03_25893, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175.3 bits (443), Expect = 3.6e-40
Identity = 75/122 (61.48%), Postives = 96/122 (78.69%), Query Frame = 0


Query: 12  LVILLLTINLATLVQPSRVNDDFNSPIWDGWVDEDRGITLRPCLDRMKSAKCQVELYNYY 71
           +V+LLL +NL   V+ +R +DD+NSPIWD W+DEDR   LRPCL+ MKSAKCQV+LYN Y
Sbjct: 1   MVVLLLVVNLQGFVRVTRADDDYNSPIWDRWLDEDRAYYLRPCLNLMKSAKCQVQLYNNY 60

Query: 72  FNISKKELDLNCCVFVKVMGKKCARAFASWYKFPGLEIYEPNPMKVYINCARRL-GALPP 131
           FN+SK+ELDLNCCVF++VMGKKC   FA W+ +P  E+Y+PNPMK+Y  C  RL  ++PP
Sbjct: 61  FNLSKEELDLNCCVFIQVMGKKCTLNFAGWFNYPIFEVYKPNPMKLYKRCIARLSSSIPP 120

Query: 132 TP 133
            P
Sbjct: 121 MP 122

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BLAST of HG10004060.1 vs. ExPASy TrEMBL
Match: A0A5D3C280 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001130 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.5e-55
Identity = 102/125 (81.60%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 9   MGALVILLLTINLATLVQPSRVNDDFNSPIWDGWVDEDRGITLRPCLDRMKSAKCQVELY 68
           M A+VILL  INL+ LVQ S V++D+NSPIWDGWVDEDRG TLRPCLDRM+SAKCQVELY
Sbjct: 1   MRAIVILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELY 60

Query: 69  NYYFNISKKELDLNCCVFVKVMGKKCARAFASWYKFPGLEIYEPNPMKVYINCARRLGAL 128
           NYYFNISKKELDLNCCVFVKVMGKKCA+AF  WY+FPGLEIYEPNPMKVY NC  RL A 
Sbjct: 61  NYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAP 120

Query: 129 PPTPF 134
           PP PF
Sbjct: 121 PPAPF 125

[Close]

BLAST of HG10004060.1 vs. ExPASy TrEMBL
Match: A0A5A7TZR1 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001070 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.4e-53
Identity = 101/135 (74.81%), Postives = 109/135 (80.74%), Query Frame = 0


Query: 1   MAKGNNNTMGALVILLLTINLATLVQPSR--VNDDFNSPIWDGWVDEDRGITLRPCLDRM 60
           MA G N   G L ILLL +NLA LV PS   V+DD+NSPIW+GWVDEDR   LRPCLD M
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  KSAKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCARAFASWYKFPGLEIYEPNPMKVY 120
           KSAKCQV+LYNYYFNISKKELDL CCVFVK+MGK CA AFA WY+FPGLE+YEPNPM VY
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 INCARRLGALPPTPF 134
            NC  RL ALPPTPF
Sbjct: 121 NNCVGRLQALPPTPF 135

[Close]

BLAST of HG10004060.1 vs. ExPASy TrEMBL
Match: A0A0A0KEB8 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G054340 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.4e-53
Identity = 100/126 (79.37%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 7   NTMGALVILLLTINLATLVQPSRVNDDFNSPIWDGWVDEDRGITLRPCLDRMKSAKCQVE 66
           N M A+VILL  INLA LVQ S V++D+NS IW+ W+DEDR  TLRPCLDRM+SAKCQVE
Sbjct: 6   NAMRAMVILLSAINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSAKCQVE 65

Query: 67  LYNYYFNISKKELDLNCCVFVKVMGKKCARAFASWYKFPGLEIYEPNPMKVYINCARRLG 126
           LYNYYFNISKKELDLNCCVFVKVMGKKCA+AF  WY+FPGLEIYEPNPMKVY NCA RL 
Sbjct: 66  LYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCATRLS 125

Query: 127 ALPPTP 133
           A PPTP
Sbjct: 126 APPPTP 131

[Close]

BLAST of HG10004060.1 vs. ExPASy TrEMBL
Match: A0A0A0KQ41 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.6e-38
Identity = 80/131 (61.07%), Postives = 94/131 (71.76%), Query Frame = 0


Query: 5   NNNTMGALVIL---LLTINLATLVQPSRVNDDFNSPIWDGWVDEDRGITLRPCLDRMKSA 64
           NN+T   LV++   LL ++   LVQPS V+D+  S IW  W+DEDR  TL PCL  M+S 
Sbjct: 2   NNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSE 61

Query: 65  KCQVELYNYYFNISKKELDLNCCVFVKVMGKKCARAFASWYKFPGLEIYEPNPMKVYINC 124
           KCQVELYNYYFNISKKELDL+CCV+V  MGKKCA AF  W+ FP LE  +PNPMKVY NC
Sbjct: 62  KCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNC 121

Query: 125 ARRLGALPPTP 133
            +RL    PTP
Sbjct: 122 FKRLTFPAPTP 132

[Close]

BLAST of HG10004060.1 vs. ExPASy TrEMBL
Match: A0A0A0L535 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 5.7e-31
Identity = 68/135 (50.37%), Postives = 92/135 (68.15%), Query Frame = 0


Query: 1   MAKGNNNTMGALVIL---LLTINLATLVQPSRVNDDFNSPIWDGWVDEDRGITLRPCLDR 60
           M K +N+T   L+++   LL ++   LV PS ++D+  S IW GW+D+DR   L  CL  
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  MKSAKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCARAFASWYKFPGLEIYEPNPMKV 120
           MKS KCQVELYNYYFN SKKE+DL+CCV+V  +G++CA +F SW+   G +  +PNPMK+
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120

Query: 121 YINCARRLGA-LPPT 132
           Y NC +RL    PPT
Sbjct: 121 YNNCFKRLTVPAPPT 135

The following BLAST results are available for this feature:

BLAST of HG10004060.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046835.1	5.2e-55	81.60	hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA004...	[more]
KAG6578867.1	4.4e-54	80.00	hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0046841.1	2.9e-53	74.81	hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK044...	[more]
KAE8646662.1	2.6e-46	76.72	hypothetical protein Csa_004797, partial [Cucumis sativus]	[more]
KAG6575254.1	3.6e-40	61.48	hypothetical protein SDJN03_25893, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10004060.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10004060.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C280	2.5e-55	81.60	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TZR1	1.4e-53	74.81	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0KEB8	2.4e-53	79.37	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G0543...	[more]
A0A0A0KQ41	1.6e-38	61.07	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G3818...	[more]
A0A0A0L535	5.7e-31	50.37	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0083...	[more]

BLAST of HG10004060.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 54..101 e-value: 3.0E-6 score: 27.3

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10004060	HG10004060	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10004060.1-cds	HG10004060.1-cds-Chr08:13278696..13279097	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10004060.1	HG10004060.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity