HG10003112.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTATATTGAGGAACTGAAGGAAGGGGAGTTGCAGAGTGGGGAAGAGGGAGATTCATGTGTTATTGTTAGTAATTTGGAGAGTCAGAGCATTGTTAGGTCTGATGTGAAAAGGATCGTTGTTGGCGTTGGGGCTCGTGTACTTTTCTACCCGACTTTGCTTTACAATGTTTTTAGAAATAAGCTTCAGACGGAGTTTCGTTGGTGGGACAAGGTTGATGAGGTATATATTTTTCTTCTGGTCAATTTCTTCCTGAATCAGATGACAAAAGAATGTATTGTATTGTTATCACTCCTCGAATGCATTGTAATGCCATTTTTTTTTCTTCAGTTTATATTGTTAGGTGCTGTTCCATTCCCTGCCGATGTTCCCCGTTTGAAGGAGGTTGGTGTTCGAGGAGTGATAACACTAAATGAGCCATATGAGACTTTGGTTCCTTCAACTCTATATCGTGTAAGTGTCTTTTGATTTTTCTTCTCTTGTACGAAATGCATTCTGTTAGATTCTCTAGGGTCGTGTTAAGTGGAACTATGAAAGTGAGGGAGGTGGAAGGAAAGTGCCTTCCATGTATTTCAGAAGGTGGTGCTAAGTGCTAGAAACTAATATGGGAAGTGGAGCCTATTTGTTTGCATATAAGCCTATTTCTATTCGCCAAAACTTGGTGCCACTTGGCTGAAAAGGCTACTTCTTACAGTTAAGATTCCCTGTGTGTAATTCTCTAATCCTCTTCCTCGCTGGGTTTAGATAGTGTCTTTCAATTAAGTAAATGCAATGCATCCCACCCCCTTCTTTGATGCCTTCCCAATTTTCAACGTGTCTCGACTCTCAAACATCTTCAAGGGAGAGAAAGTAAAGTGAGATCTCACTCAACACCAAATGAGTCACGGTAAGTGTTCCTCCCTTCAAAAGAAAATTTCCCCCCATAGGAGAATCTCTTTTGGACCTTCTCAACCAGCGCATCTTGAAAGAGGGATGCTATGGGGCTGTGTCATAAGGACACATGGAGATACAACCAAGGAGTACGCATCAACAGACCCATCTTGGACCCTTGGTTAATTACTGCATTTTTGCGCACTTGTATTCACTTTCAAACTAGATAACAAAGTAAAATGTTATGTTACAAGGTTTGACTTAATTTAAAAGGGCCTCCTTCCCGAACAATGGAAGGAAGATACTCGAACACGACATGTTTGCAAATTGAAAATGAGAGAGATGGACATTATCCTTCCTAATCTTGAAACCCTCACTTATACCTCTCTTCATATTCCAATTCCAATTCTGTTAATTTTTGGCAACTGGTGGTGGAGCGTTTCCAGCATAAACTTCATAATTGGAAATATGCTTATATTTCGAAAAGTGGTAGACATACGCTCATTCAGGCTGCTCTCTCTAGTCTCCCTACATATTATTTGTCTTTGTTCAGGGCCCCAGCCTTAGTCATTAGTTGCCTTGATAAGATGGTACGTGATTTTTTCTGGGAAGGTGCGGGAGGTGATGGTGGCATGCACAACGTGAATTGGGTGATTTCTCAGCGTCCTCGGCTTCAAGGCGGGATTGGTATCGGAAACTTTAAGCATCGCAATTCTGCCCTTCTTGCTAAATAGACTTGGTGTTTCTTAACTGAGCGATCCGCCTTATGGAGGAAACTCATTGTGGCCAAGTATTATTCTTTTGATTGCACATGGCCCACTTCAATTTCTCGTGGTTCTTCTAAATCTCCATGGCGATTTATCATTCACTATATTGATTTGGTAGCCAATCGTATTGTTCGTCGTCTGGGTGATGGAGCTTCTACGTCATTTTGGCATGATTCTTAGCTTAGTTGTGGTGTTCTTGCTACAGAGTATCTACGACTTTATCGCATCACTCAACATCCAGAAACCACGGTTGCGAATGTATGGGTACCTTCTACTGGTGCATGGAATTTAAATTTACGGCGTAATCTTACTAAGTTAGAAATATCAGAATGGGCTTCTCTATCTTCATACTTGGCTTCCATCAGATTGTGCAACTCTTCTGATGCTTGGCTATGGCCACTTGACCCTTCCTCAATATTCACTGTCAAATCTCTTATGACTGATTTAGTGGGTGCATTGGATGGTGGTTTATCTGATCTTTACTATGAGATTTGTAAAGAAAGATATCCAAAAAAGATTAAAATTTTTCTATGGGAGCTCAGTTGGGGTGCCATAAATACCGCCGATTGCTTGCAGCGCCGCTTCCCTTATTGGTCTCTCTCTCCATCTTGGTGTCATATGTGTTGTAAACATGATGAAACACCGATTCATCTGTTTTTACACTGCTCCTTTGCTAACAGTTTTTGGAACACTGTTTTGCCTGCTTTTGGATGGACTTACACGCGCCCTAATAGTATCTCAGACGCATTGTTATCTTTGTTGGTGGGTCATCCTTTTGGTGGTACCAAGAAAACAATTTGGCTGGCCCTCATTCGCGCTTTTCTTTGGAGTTTTTGGGTGAACGGAATAGGCGACTCTTTCATGATTCTCTATTCTCTTTTCATCGCTTTATGGAACTCGTTTTATCTACTGCTTTTTCTTGGTGTAAAACGAAGCATCCTTTCATTTATTATAGTTTATCTTTCTTAGTCAATAATTGTCTATCCCTCCTGTAATTTATATTCTATGGGGTAAATTATAGACCCCCATTATTACTATCAATAAATGTTTCTTTTACAAAAAAAAAAGAATAAATAATGAAAAAGAAGGGACAGGGAGATGAAGGTTACCCTTGGTTAACACCCGTAATAGGAAAGATTTTTATCTGCTTGTACTACAATTTATTACAATTGGAAAGTTTAGTAAGTGTGAGTTTCCTTTCCTTCAAAGAAATCCAAATTGATTGTGGTTGTACACTCATCAAAAGCTCTTTGAAATGTTAAGATTGTGCCCAGTAACACTTTTTCCATTATCTTTGCTAAGGTTTTTAAAATAATCTAGTCGATACTTGCAAGTTTGCAACCAAACTAATGGATCAAAGGTCCTTAAATTTTGCACATCCATAGAGAGACATCAATAATTGCCTCTATTGAACTCAATGAAGACTTGGATGAAACAATTGTAATATCCCATTCCCAACTGTCATGAAAAAAGGCGGTAGAAAAATTACTGGGTCAGTAGTCTTATAACCATCAAATTCAAAGGTTTCACTCTCGATTTCTTCCAGTGTGAATGGTTGCTCGAAAGCATCCTTCTTTCAGGACTGGCAGTCCTATGGAAATAAGAAACACAATCTTCAAAGGCCGGTTCACTCCATTTGTCTCCTGGAATTCTTCACTCTATGAATCATCAGTTAATACTCTTATTACTCACTTGAGTCTTGTTGTCATCCAAACTATCCGAAAACCTCACTTTATTTATAATCTCCTATTTTTAAATATGCCAATCCCCAAATACTCATCTATTTCAATCTTTCAACCAAACTTTGCGCTTTTTTAACCTTGCTCTGTTAACTCAGTAAGCAAGTAATTTTCCTCTGCATCTCTGTTCGAAATGATGAAACCAACCTTTGTTTCAGCAATCTAAAACCTTCCCACCTCTATTCCACATTGCCAGACCAACAAGGTGACAGAAGGACTTATAAGAAGGTGTTTGGGAGACTTCCAATGCCATTTTCATACTCATAAGGCGTTTGAATTTGGTCTGTAATGGAAAATTGAAGTGTAAATATCATCTGATATGAGGCTGTGTCAGCTGACATTTAATGACCTGTTACTGTTTCTTGACTTGATTACTGTAGATTTTTTCCTGTAACCTACTTGTGCCTTAAATTGGTTTGAGAATGATTTTTGTGTGTTTACTATTGCAGGATCATGGAATTGATCATCTGACCATTCCGACAAGAGACTATTGTTTTGCACCTTTATTGAGTGACATTTGCACTGCTGTAAATTTCATCCACAGTATGTATCGTATCTTCTACTAAACTCGTTCTGCTTCCAATCTCAGGTTGCTAATTTCTATCTTATTGCTTAGTGAAAGGGTAGTTTCTATGTTCATTAAATGAGAATATGTGCAACCTTCAACTTTATGGTGCCAAACAAACTTTTCTTGATTGAATAATTTCATTTTTTGATCTGATGCTGCTATCAAAGAAAATGCATCACATGGACAGACTACATATGTTCATTGTAAAGCTGGACGAGGGCGTAGCACAACCATCGTTATTTGCTATTTGGTAATTTTTTGAACACAAATAAAACGACTTTTTTTGCTTAAATTTATAAATCAAAGAGCCTTTGGTTTTCTGAGGCTTTGTGGTGGTGTACAGGTGCAATACAAGCAAATGACGCCAGATGAAGCTTATAAGCATGTGAAATCAATCAGGCCAAGGGTGCTTTTAGCATCATCACAGTGGCAGGTATTCTGAGGCCTTTCTCCCTGTGGCTTGCTAATTTTCTGAGGCTTTTCATCATGATGAATTCTGCGTTTTAATCAGTGAAATTGACCTAAATCAAGCTGCATGTACCCCCTGGCTGCATGTGCATTCCATATTTCATACCTCACTTTGAAATCTTTTCATCCCAGTTTGGACTTGATGACAATTCTCAGAACGTGCATGCTAATTGATGGTTTCTAATTGCAGGCTGTCCTGGAATTTTACCACCTGATTGTGCAGAAGGATGTTTCCTTCTGCCACATAGATGATCTAGGAAAGGAAGTATCAGGATCATTGCATGATCTTATCGCATTCGATGATGGTTCTGTAGTTGTTGTAAAAGAATCCGATCTTGATGGATATGACCAAAGTATCAGCCAAAGTGACATGGGTGATATCTGGGCAGATTTAAGTGTAGTCTGCAGGGTTCGTGTTGCTGGTCAGGCAGCCCTCACAAGAATCTCTTGTTTGTGGCTTAGCTATCGAGCAAAACACCATAGCCAGAAGATTTCAGGAGATGATCACGGCGTCGGGAAGGGTTGTTCACTTAGTGCTACTCATTTGGAAGGGTTCAGTGTGGACATCCATGTCTATTAA ATGTATATTGAGGAACTGAAGGAAGGGGAGTTGCAGAGTGGGGAAGAGGGAGATTCATGTGTTATTGTTAGTAATTTGGAGAGTCAGAGCATTGTTAGGTCTGATGTGAAAAGGATCGTTGTTGGCGTTGGGGCTCGTGTACTTTTCTACCCGACTTTGCTTTACAATGTTTTTAGAAATAAGCTTCAGACGGAGTTTCGTTGGTGGGACAAGGTTGATGAGTTTATATTGTTAGGTGCTGTTCCATTCCCTGCCGATGTTCCCCGTTTGAAGGAGGTTGGTGTTCGAGGAGTGATAACACTAAATGAGCCATATGAGACTTTGGTTCCTTCAACTCTATATCGTGATCATGGAATTGATCATCTGACCATTCCGACAAGAGACTATTGTTTTGCACCTTTATTGAGTGACATTTGCACTGCTGTAAATTTCATCCACAAAAATGCATCACATGGACAGACTACATATGTTCATTGTAAAGCTGGACGAGGGCGTAGCACAACCATCGTTATTTGCTATTTGGTGCAATACAAGCAAATGACGCCAGATGAAGCTTATAAGCATGTGAAATCAATCAGGCCAAGGGTGCTTTTAGCATCATCACAGTGGCAGGCTGTCCTGGAATTTTACCACCTGATTGTGCAGAAGGATGTTTCCTTCTGCCACATAGATGATCTAGGAAAGGAAGTATCAGGATCATTGCATGATCTTATCGCATTCGATGATGGTTCTGTAGTTGTTGTAAAAGAATCCGATCTTGATGGATATGACCAAAGTATCAGCCAAAGTGACATGGGTGATATCTGGGCAGATTTAAGTGTAGTCTGCAGGGTTCGTGTTGCTGGTCAGGCAGCCCTCACAAGAATCTCTTGTTTGTGGCTTAGCTATCGAGCAAAACACCATAGCCAGAAGATTTCAGGAGATGATCACGGCGTCGGGAAGGGTTGTTCACTTAGTGCTACTCATTTGGAAGGGTTCAGTGTGGACATCCATGTCTATTAA ATGTATATTGAGGAACTGAAGGAAGGGGAGTTGCAGAGTGGGGAAGAGGGAGATTCATGTGTTATTGTTAGTAATTTGGAGAGTCAGAGCATTGTTAGGTCTGATGTGAAAAGGATCGTTGTTGGCGTTGGGGCTCGTGTACTTTTCTACCCGACTTTGCTTTACAATGTTTTTAGAAATAAGCTTCAGACGGAGTTTCGTTGGTGGGACAAGGTTGATGAGTTTATATTGTTAGGTGCTGTTCCATTCCCTGCCGATGTTCCCCGTTTGAAGGAGGTTGGTGTTCGAGGAGTGATAACACTAAATGAGCCATATGAGACTTTGGTTCCTTCAACTCTATATCGTGATCATGGAATTGATCATCTGACCATTCCGACAAGAGACTATTGTTTTGCACCTTTATTGAGTGACATTTGCACTGCTGTAAATTTCATCCACAAAAATGCATCACATGGACAGACTACATATGTTCATTGTAAAGCTGGACGAGGGCGTAGCACAACCATCGTTATTTGCTATTTGGTGCAATACAAGCAAATGACGCCAGATGAAGCTTATAAGCATGTGAAATCAATCAGGCCAAGGGTGCTTTTAGCATCATCACAGTGGCAGGCTGTCCTGGAATTTTACCACCTGATTGTGCAGAAGGATGTTTCCTTCTGCCACATAGATGATCTAGGAAAGGAAGTATCAGGATCATTGCATGATCTTATCGCATTCGATGATGGTTCTGTAGTTGTTGTAAAAGAATCCGATCTTGATGGATATGACCAAAGTATCAGCCAAAGTGACATGGGTGATATCTGGGCAGATTTAAGTGTAGTCTGCAGGGTTCGTGTTGCTGGTCAGGCAGCCCTCACAAGAATCTCTTGTTTGTGGCTTAGCTATCGAGCAAAACACCATAGCCAGAAGATTTCAGGAGATGATCACGGCGTCGGGAAGGGTTGTTCACTTAGTGCTACTCATTTGGAAGGGTTCAGTGTGGACATCCATGTCTATTAA MYIEELKEGELQSGEEGDSCVIVSNLESQSIVRSDVKRIVVGVGARVLFYPTLLYNVFRNKLQTEFRWWDKVDEFILLGAVPFPADVPRLKEVGVRGVITLNEPYETLVPSTLYRDHGIDHLTIPTRDYCFAPLLSDICTAVNFIHKNASHGQTTYVHCKAGRGRSTTIVICYLVQYKQMTPDEAYKHVKSIRPRVLLASSQWQAVLEFYHLIVQKDVSFCHIDDLGKEVSGSLHDLIAFDDGSVVVVKESDLDGYDQSISQSDMGDIWADLSVVCRVRVAGQAALTRISCLWLSYRAKHHSQKISGDDHGVGKGCSLSATHLEGFSVDIHVY Homology
BLAST of HG10003112.1 vs. NCBI nr
Match: XP_038903934.1 (phosphatidylglycerophosphate phosphatase PTPMT1 [Benincasa hispida]) HSP 1 Score: 655.6 bits (1690), Expect = 2.3e-184 Identity = 320/333 (96.10%), Postives = 326/333 (97.90%), Query Frame = 0
BLAST of HG10003112.1 vs. NCBI nr
Match: XP_008448809.1 (PREDICTED: putative dual specificity protein phosphatase DSP8 [Cucumis melo] >XP_008448811.1 PREDICTED: putative dual specificity protein phosphatase DSP8 [Cucumis melo] >TYK12040.1 putative dual specificity protein phosphatase DSP8 [Cucumis melo var. makuwa]) HSP 1 Score: 643.3 bits (1658), Expect = 1.2e-180 Identity = 320/334 (95.81%), Postives = 323/334 (96.71%), Query Frame = 0
BLAST of HG10003112.1 vs. NCBI nr
Match: XP_004147221.1 (putative dual specificity protein phosphatase DSP8 [Cucumis sativus] >KGN55844.1 hypothetical protein Csa_010888 [Cucumis sativus]) HSP 1 Score: 641.3 bits (1653), Expect = 4.5e-180 Identity = 318/334 (95.21%), Postives = 321/334 (96.11%), Query Frame = 0
BLAST of HG10003112.1 vs. NCBI nr
Match: KAA0041068.1 (putative dual specificity protein phosphatase DSP8 [Cucumis melo var. makuwa]) HSP 1 Score: 634.0 bits (1634), Expect = 7.1e-178 Identity = 320/347 (92.22%), Postives = 323/347 (93.08%), Query Frame = 0
BLAST of HG10003112.1 vs. NCBI nr
Match: XP_022938464.1 (putative dual specificity protein phosphatase DSP8 [Cucurbita moschata]) HSP 1 Score: 627.1 bits (1616), Expect = 8.7e-176 Identity = 304/333 (91.29%), Postives = 317/333 (95.20%), Query Frame = 0
BLAST of HG10003112.1 vs. ExPASy Swiss-Prot
Match: Q9ZQP1 (Phosphatidylglycerophosphate phosphatase PTPMT1 OS=Arabidopsis thaliana OX=3702 GN=PTPMT1 PE=1 SV=2) HSP 1 Score: 366.3 bits (939), Expect = 3.6e-100 Identity = 198/355 (55.77%), Postives = 249/355 (70.14%), Query Frame = 0
BLAST of HG10003112.1 vs. ExPASy Swiss-Prot
Match: Q6NKR2 (Phosphatidylglycerophosphate phosphatase PTPMT2 OS=Arabidopsis thaliana OX=3702 GN=PTPMT2 PE=1 SV=1) HSP 1 Score: 257.7 bits (657), Expect = 1.8e-67 Identity = 120/190 (63.16%), Postives = 150/190 (78.95%), Query Frame = 0
BLAST of HG10003112.1 vs. ExPASy Swiss-Prot
Match: P0C089 (Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 OS=Rattus norvegicus OX=10116 GN=Ptpmt1 PE=1 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 3.4e-29 Identity = 72/178 (40.45%), Postives = 103/178 (57.87%), Query Frame = 0
BLAST of HG10003112.1 vs. ExPASy Swiss-Prot
Match: Q66GT5 (Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 OS=Mus musculus OX=10090 GN=Ptpmt1 PE=1 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 7.5e-29 Identity = 71/178 (39.89%), Postives = 102/178 (57.30%), Query Frame = 0
BLAST of HG10003112.1 vs. ExPASy Swiss-Prot
Match: Q8WUK0 (Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 OS=Homo sapiens OX=9606 GN=PTPMT1 PE=1 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 6.3e-28 Identity = 70/178 (39.33%), Postives = 102/178 (57.30%), Query Frame = 0
BLAST of HG10003112.1 vs. ExPASy TrEMBL
Match: A0A1S3BKK7 (putative dual specificity protein phosphatase DSP8 OS=Cucumis melo OX=3656 GN=LOC103490865 PE=3 SV=1) HSP 1 Score: 643.3 bits (1658), Expect = 5.7e-181 Identity = 320/334 (95.81%), Postives = 323/334 (96.71%), Query Frame = 0
BLAST of HG10003112.1 vs. ExPASy TrEMBL
Match: A0A5D3CKU8 (Putative dual specificity protein phosphatase DSP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00530 PE=3 SV=1) HSP 1 Score: 643.3 bits (1658), Expect = 5.7e-181 Identity = 320/334 (95.81%), Postives = 323/334 (96.71%), Query Frame = 0
BLAST of HG10003112.1 vs. ExPASy TrEMBL
Match: A0A0A0L469 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019350 PE=3 SV=1) HSP 1 Score: 641.3 bits (1653), Expect = 2.2e-180 Identity = 318/334 (95.21%), Postives = 321/334 (96.11%), Query Frame = 0
BLAST of HG10003112.1 vs. ExPASy TrEMBL
Match: A0A5A7TDM0 (Putative dual specificity protein phosphatase DSP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold477G00400 PE=3 SV=1) HSP 1 Score: 634.0 bits (1634), Expect = 3.5e-178 Identity = 320/347 (92.22%), Postives = 323/347 (93.08%), Query Frame = 0
BLAST of HG10003112.1 vs. ExPASy TrEMBL
Match: A0A6J1FE58 (putative dual specificity protein phosphatase DSP8 OS=Cucurbita moschata OX=3662 GN=LOC111444691 PE=3 SV=1) HSP 1 Score: 627.1 bits (1616), Expect = 4.2e-176 Identity = 304/333 (91.29%), Postives = 317/333 (95.20%), Query Frame = 0
BLAST of HG10003112.1 vs. TAIR 10
Match: AT2G35680.1 (Phosphotyrosine protein phosphatases superfamily protein ) HSP 1 Score: 366.3 bits (939), Expect = 2.6e-101 Identity = 198/355 (55.77%), Postives = 249/355 (70.14%), Query Frame = 0
BLAST of HG10003112.1 vs. TAIR 10
Match: AT5G56610.1 (Phosphotyrosine protein phosphatases superfamily protein ) HSP 1 Score: 257.7 bits (657), Expect = 1.3e-68 Identity = 120/190 (63.16%), Postives = 150/190 (78.95%), Query Frame = 0
BLAST of HG10003112.1 vs. TAIR 10
Match: AT5G56610.2 (Phosphotyrosine protein phosphatases superfamily protein ) HSP 1 Score: 172.9 bits (437), Expect = 4.2e-43 Identity = 91/190 (47.89%), Postives = 114/190 (60.00%), Query Frame = 0
BLAST of HG10003112.1 vs. TAIR 10
Match: AT3G23610.1 (dual specificity protein phosphatase 1 ) HSP 1 Score: 53.9 bits (128), Expect = 2.8e-07 Identity = 35/123 (28.46%), Postives = 59/123 (47.97%), Query Frame = 0
BLAST of HG10003112.1 vs. TAIR 10
Match: AT3G23610.2 (dual specificity protein phosphatase 1 ) HSP 1 Score: 53.9 bits (128), Expect = 2.8e-07 Identity = 35/123 (28.46%), Postives = 59/123 (47.97%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|