HG10001930.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001930.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial
Location	Chr11: 1788068 .. 1790435 (-)
Sequence length	864
RNA-Seq Expression	HG10001930.1
Synteny	HG10001930.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAAAAGCTGGTTCCGCCATGGCTACAACAAGGTGGCTAAGACGAGGTTTGGAGTATTAGAAGCCCATCCTGTGGCTCAGCAACATGCAGAAGAAGCCATGGAAGCTCATGTTGAAACACAGAATAAGCTTAAATCCAATCAAAAGGAGTTCAAAATATATAGGTGGAATCCTCAATATCCCAACCACAAGCCTTTCCTTCACTCTTTCTTTGTTGATCTCTCTAATTGTGGTCCTATGGTACACTCTTCCTCTCTTTCTCTTTCTCTAATGACATTTTAGAACTATGTTTCATAATTTTGGTTTGGTGTCATATTAGTTTTTGGCTTAAATTCGAGAAATTACTCAAGTAGCCTTCGCAGTTGAGAAACTGCAAAAGTATCTCGAATTTGTATTTAGTTATTGATGCCAAAATTTGGATGAGATAAATACAAACTCAATTCTCCTGAGACAACAACCGTGAATTTGTAATATAGTGAAAAATACTACCAGCAAAACGAAAAAGATCTGGACACTTGTGTGGTGCTTGCCACACAAGCTGCGATGTTTAGCAGAGAAAACTATGTAGCATATAGGGAACTTTAGTATGTGAGTGAACTCACTCCTTTGGGAGAGTTTACCATATATTTATAGTTTACATTGACCTAGACCCTCCTTCCTTTAGGGTTTCCAACATGCACTTCTTGGATAAATGTATTTAGAGGAACTGCAAAAATACCTCGAATTGTATCTCGTGATTAGCTTGATGAGTGGTTATCACGACATGCATATTTTTGAATTCAAATCCCTTTCCCTTGTTAAATCGTCGATTGAGGGTCAATTGGCGATTTAAGATGGTATCAAAAGCAGGTAGATTATCTTAAACTCTTGGGTCAATCGACGATTTAATACTTTTCTCAATTAATAAGAAGGATGTTTGTAGATAACTTGTATGTGAGGATGTGATTCACAGTTTTGCATCGATACTCTCTAGATCTTTTGAATGTGAGATGCTCAACCAGATATGTATGAGATAGGAATGAGGAAAGTAGATATATTAAGACTGGTGAGATGGTGATTTTGTAGGTTTTAGATGCATTGCAGAAGATAAAAGCAGAGAAAGACTCAAGTTTGAGTTATAGAAGGTCTTGTAGGGAAGGAATATGTGGATCATGTGCCATGAACATTGATGGAGCTAACACAGTGGCCTGTCTCAAACCTATTGATGCTGACACTTCCAAACCCACCATTATAACTCCTCTTCCCCACATGTTTGTCATCAAAGATCTTGTTGTTGATCTCACCAACTTCTACCAACAATACAAGTAATCTCTCTCATCTCACTTTTCACTTTTTATCTTTAGCTTAAGCTTAACCTTCAATGTTTTTCAATTATCATTCAAATCTTTATAACCTCGTTTCCTTTTATATTAATATGGAAATGTTGAGGATTCCTTGTGATATTATTGTTCTTAATCAAAGTGTGGCATGTTAGAAAAATATTGCATGTTTGTAATATCATTCATTGAATGAGAACATCATTTCTTTTCTCCTTAGCTGACTATAGTTTGATGCATATATAGGTCGATCGAGCCATGGCTGAAGACTAGAAGGTCGACAGAGGATGGGCGAGAGTTCAGGCAATCTCGGGCGGAGAGGAAGAAGCTAGATGGGTTGTATGAGTGTATTCTTTGTGCTTGTTGCAGTGCTTCATGTCCTCCATATTGGTGGAATCCAGAAGAGTTTCTTGGTCCTGCTGCATTGCTCCATGTCTATCGATGGATCTCTGATAGGTAATTCAAGTACTTTCTCCCCCATTTACTTTTTTTTTTCCAATTATATTTGAGACATATTTGCGAGTTATCTGAAATGGTTGAAATCACTGTTTTTAGTTTCATAATCATTGAAAATACTTTTCAATCCTCCAAAATGAGAGTGATTCTGAAATAGTTAAAATCAATTTTGTCATCTTTAAAATCACTCTGAAACACGATTATCTTTTAATCAAATTGTATTTAACAGTGTAAAATTAAAAATTAAATTAATTTTAATTGATTAAAACGTGTGTCAAAGTAAATAGAAGTGATTTTAACCATTTCAAAATAATTAATTATCTTAAACATTGAGATAGATGTGAAGTTGAACTAGGGTATAATTTGACAAGCTTAATCTATGATTAATGATGTGAGGTTTAAAAGTTGTTTAAAATGGTAGTCGAGATGAGTTCGAGAAGGAACGATTGCAAGCAATAGCGGAAGACAAGACGAAGCTTTATAGATGTAGAACTGTAAAGAACTGCACAGCCAACTGCCCCAAAAGCCTCGATCCTTCCTCTGCAATTCACCACATGAAGGCAATGCATTTGATCTCCAAGTCCAACAATTAG

mRNA sequence

ATGTTAAAAAGCTGGTTCCGCCATGGCTACAACAAGGTGGCTAAGACGAGGTTTGGAGTATTAGAAGCCCATCCTGTGGCTCAGCAACATGCAGAAGAAGCCATGGAAGCTCATGTTGAAACACAGAATAAGCTTAAATCCAATCAAAAGGAGTTCAAAATATATAGGTGGAATCCTCAATATCCCAACCACAAGCCTTTCCTTCACTCTTTCTTTGTTGATCTCTCTAATTGTGGTCCTATGGTTTTAGATGCATTGCAGAAGATAAAAGCAGAGAAAGACTCAAGTTTGAGTTATAGAAGGTCTTGTAGGGAAGGAATATGTGGATCATGTGCCATGAACATTGATGGAGCTAACACAGTGGCCTGTCTCAAACCTATTGATGCTGACACTTCCAAACCCACCATTATAACTCCTCTTCCCCACATGTTTGTCATCAAAGATCTTGTTGTTGATCTCACCAACTTCTACCAACAATACAAGTCGATCGAGCCATGGCTGAAGACTAGAAGGTCGACAGAGGATGGGCGAGAGTTCAGGCAATCTCGGGCGGAGAGGAAGAAGCTAGATGGGTTGTATGAGTGTATTCTTTGTGCTTGTTGCAGTGCTTCATGTCCTCCATATTGGTGGAATCCAGAAGAGTTTCTTGGTCCTGCTGCATTGCTCCATGTCTATCGATGGATCTCTGATAGTCGAGATGAGTTCGAGAAGGAACGATTGCAAGCAATAGCGGAAGACAAGACGAAGCTTTATAGATGTAGAACTGTAAAGAACTGCACAGCCAACTGCCCCAAAAGCCTCGATCCTTCCTCTGCAATTCACCACATGAAGGCAATGCATTTGATCTCCAAGTCCAACAATTAG

Coding sequence (CDS)

ATGTTAAAAAGCTGGTTCCGCCATGGCTACAACAAGGTGGCTAAGACGAGGTTTGGAGTATTAGAAGCCCATCCTGTGGCTCAGCAACATGCAGAAGAAGCCATGGAAGCTCATGTTGAAACACAGAATAAGCTTAAATCCAATCAAAAGGAGTTCAAAATATATAGGTGGAATCCTCAATATCCCAACCACAAGCCTTTCCTTCACTCTTTCTTTGTTGATCTCTCTAATTGTGGTCCTATGGTTTTAGATGCATTGCAGAAGATAAAAGCAGAGAAAGACTCAAGTTTGAGTTATAGAAGGTCTTGTAGGGAAGGAATATGTGGATCATGTGCCATGAACATTGATGGAGCTAACACAGTGGCCTGTCTCAAACCTATTGATGCTGACACTTCCAAACCCACCATTATAACTCCTCTTCCCCACATGTTTGTCATCAAAGATCTTGTTGTTGATCTCACCAACTTCTACCAACAATACAAGTCGATCGAGCCATGGCTGAAGACTAGAAGGTCGACAGAGGATGGGCGAGAGTTCAGGCAATCTCGGGCGGAGAGGAAGAAGCTAGATGGGTTGTATGAGTGTATTCTTTGTGCTTGTTGCAGTGCTTCATGTCCTCCATATTGGTGGAATCCAGAAGAGTTTCTTGGTCCTGCTGCATTGCTCCATGTCTATCGATGGATCTCTGATAGTCGAGATGAGTTCGAGAAGGAACGATTGCAAGCAATAGCGGAAGACAAGACGAAGCTTTATAGATGTAGAACTGTAAAGAACTGCACAGCCAACTGCCCCAAAAGCCTCGATCCTTCCTCTGCAATTCACCACATGAAGGCAATGCATTTGATCTCCAAGTCCAACAATTAG

Protein sequence

MLKSWFRHGYNKVAKTRFGVLEAHPVAQQHAEEAMEAHVETQNKLKSNQKEFKIYRWNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNIDGANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTEDGREFRQSRAERKKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHVYRWISDSRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAMHLISKSNN

Homology

[Close]

BLAST of HG10001930.1 vs. NCBI nr
Match: XP_038875058.1 (succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Benincasa hispida])

HSP 1 Score: 551.2 bits (1419), Expect = 5.2e-153
Identity = 265/291 (91.07%), Postives = 272/291 (93.47%), Query Frame = 0


Query: 1   MLKSWFRHGYNKVAKT-----RFGVLEAHPVAQQHAEEAMEAHVETQNKLKSNQKEFKIY 60
           MLKSWFRHGYNKVAK      +FGVLEAHP AQQHAEEAMEAH E Q+ LK +QKEFKIY
Sbjct: 1   MLKSWFRHGYNKVAKRLAMKGKFGVLEAHPKAQQHAEEAMEAHGEIQSNLKFHQKEFKIY 60

Query: 61  RWNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNI 120
           RWNPQYPNHKPFLHSFFVDLS CGPMVLD LQKIKAE+DSSLSYRRSCREGICGSCAMNI
Sbjct: 61  RWNPQYPNHKPFLHSFFVDLSKCGPMVLDGLQKIKAEQDSSLSYRRSCREGICGSCAMNI 120

Query: 121 DGANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTED 180
           DGANTVACLKPIDADTSKPTIITPLPHM+VIKDLVVDLTNFYQQYKSIEPWLKTRR  ED
Sbjct: 121 DGANTVACLKPIDADTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSIEPWLKTRRPAED 180

Query: 181 GREFRQSRAERKKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHVYRWISDSRDEF 240
           GREFRQSRAERKKLDGLYECILCACCS SCPPYWWNPEEFLGPAALL+ YRWISDSRDEF
Sbjct: 181 GREFRQSRAERKKLDGLYECILCACCSTSCPPYWWNPEEFLGPAALLNAYRWISDSRDEF 240

Query: 241 EKERLQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAMHLISKSN 287
           EKERLQAI EDKTKLYRCRTV+NCTANCPKSLDPSSAIH MKAMHLISKSN
Sbjct: 241 EKERLQAIVEDKTKLYRCRTVQNCTANCPKSLDPSSAIHRMKAMHLISKSN 291

[Close]

BLAST of HG10001930.1 vs. NCBI nr
Match: XP_008454472.1 (PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial-like [Cucumis melo] >KAA0044720.1 succinate dehydrogenase (ubiquinone) iron-sulfur subunit 3 [Cucumis melo var. makuwa] >TYK16739.1 succinate dehydrogenase (ubiquinone) iron-sulfur subunit 3 [Cucumis melo var. makuwa])

HSP 1 Score: 543.9 bits (1400), Expect = 8.4e-151
Identity = 258/287 (89.90%), Postives = 273/287 (95.12%), Query Frame = 0


Query: 1   MLKSWFRHGYNKVAKTRFGVLEAHPVAQQHAEEAMEAHVETQNKLK-SNQKEFKIYRWNP 60
           MLKSWFRH YNKV+K RFGVLE HP+A+QHAEEAMEAH E ++ L+ +NQKEFKIYRWNP
Sbjct: 1   MLKSWFRHAYNKVSKQRFGVLEEHPMAKQHAEEAMEAHGEIKSNLRFNNQKEFKIYRWNP 60

Query: 61  QYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNIDGAN 120
           QYPNHKPFLHSFF+DLS CGPMVLDALQ IKAEKDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  QYPNHKPFLHSFFLDLSKCGPMVLDALQMIKAEKDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTEDGREF 180
           TVACLKPIDADTSKPTIITPLPHM+VIKDLVVDLTNFYQQYKSIEPWLKTRRS E GREF
Sbjct: 121 TVACLKPIDADTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSIEPWLKTRRSAEGGREF 180

Query: 181 RQSRAERKKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHVYRWISDSRDEFEKER 240
           RQ+ AERKKLDGLYECILCACCSASCPPYWWNPEEF+GPAALLH YRWISDSRDEF+KER
Sbjct: 181 RQTPAERKKLDGLYECILCACCSASCPPYWWNPEEFIGPAALLHAYRWISDSRDEFKKER 240

Query: 241 LQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAMHLISKSN 287
           LQAIAEDKTKLYRCRTV+NCTANCPKSLDPSSAIH+MKAMHLI +SN
Sbjct: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSSAIHNMKAMHLIFRSN 287

[Close]

BLAST of HG10001930.1 vs. NCBI nr
Match: XP_008454471.1 (PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Cucumis melo] >TYK16738.1 succinate dehydrogenase (ubiquinone) iron-sulfur subunit 3 [Cucumis melo var. makuwa])

HSP 1 Score: 543.5 bits (1399), Expect = 1.1e-150
Identity = 257/287 (89.55%), Postives = 271/287 (94.43%), Query Frame = 0


Query: 1   MLKSWFRHGYNKVAKTRFGVLEAHPVAQQHAEEAMEAHVETQNKLK-SNQKEFKIYRWNP 60
           MLK WFRH YNKV+K RFGVLE HP+A+QHAEEAMEAH E ++ L+ +NQKEFKIYRWNP
Sbjct: 1   MLKGWFRHAYNKVSKKRFGVLEEHPIAKQHAEEAMEAHGEIKSNLRFNNQKEFKIYRWNP 60

Query: 61  QYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNIDGAN 120
           QYPNHKPFLHSFF+DLS CGPMVLDALQ IKAEKDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  QYPNHKPFLHSFFLDLSKCGPMVLDALQMIKAEKDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTEDGREF 180
           TVACLKPIDADTSKPTIITPLPHM+VIKDLVVDLTNFYQQYKSIEPWLKTRRS E GREF
Sbjct: 121 TVACLKPIDADTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSIEPWLKTRRSAEGGREF 180

Query: 181 RQSRAERKKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHVYRWISDSRDEFEKER 240
           RQ+ AERKKLDGLYECILCACCS SCPPYWWNPEEFLGPAALLH YRWISDSRDEF++ER
Sbjct: 181 RQTPAERKKLDGLYECILCACCSTSCPPYWWNPEEFLGPAALLHAYRWISDSRDEFKEER 240

Query: 241 LQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAMHLISKSN 287
           LQAIAED+TKLYRCRTVKNCTA CPKSLDPSSAIHHMKAMHLIS+SN
Sbjct: 241 LQAIAEDETKLYRCRTVKNCTATCPKSLDPSSAIHHMKAMHLISRSN 287

[Close]

BLAST of HG10001930.1 vs. NCBI nr
Match: XP_004146922.1 (succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Cucumis sativus] >KGN53225.1 hypothetical protein Csa_014570 [Cucumis sativus])

HSP 1 Score: 542.7 bits (1397), Expect = 1.9e-150
Identity = 260/288 (90.28%), Postives = 269/288 (93.40%), Query Frame = 0


Query: 1   MLKSWFRHGYNKVAKTRFGVLEAHPVAQQHAEEAMEAHVETQNKLK--SNQKEFKIYRWN 60
           MLK WFRHGYNK  K RFGVLEA P+A+QHAEEAMEAH E ++ L   +N+KEFKIYRWN
Sbjct: 1   MLKRWFRHGYNKEWKQRFGVLEARPMAKQHAEEAMEAHGEIKSNLDEFNNRKEFKIYRWN 60

Query: 61  PQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNIDGA 120
           PQYPNHKPFLHSFF+DLS CGPMVLDALQKIKAEKDSSLSYRRSCREGICGSC MNIDGA
Sbjct: 61  PQYPNHKPFLHSFFLDLSKCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCGMNIDGA 120

Query: 121 NTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTEDGRE 180
           NTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRS E GRE
Sbjct: 121 NTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSAEGGRE 180

Query: 181 FRQSRAERKKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHVYRWISDSRDEFEKE 240
           FRQS AERKKLDGLYECILCACCS SCPPYWWNPEEFLGPAALLH YRWISDSRDEF+KE
Sbjct: 181 FRQSPAERKKLDGLYECILCACCSTSCPPYWWNPEEFLGPAALLHAYRWISDSRDEFKKE 240

Query: 241 RLQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAMHLISKSN 287
           RLQAIAED TKLYRCRTVKNCTANCPKSLDPSSAIHHMKAMHLIS+SN
Sbjct: 241 RLQAIAEDDTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAMHLISRSN 288

[Close]

BLAST of HG10001930.1 vs. NCBI nr
Match: KAA0044721.1 (succinate dehydrogenase (ubiquinone) iron-sulfur subunit 3 [Cucumis melo var. makuwa])

HSP 1 Score: 542.7 bits (1397), Expect = 1.9e-150
Identity = 257/287 (89.55%), Postives = 271/287 (94.43%), Query Frame = 0


Query: 1   MLKSWFRHGYNKVAKTRFGVLEAHPVAQQHAEEAMEAHVETQNKLK-SNQKEFKIYRWNP 60
           MLK WFRH YNKV+K RFGVLE HP+A+QHAEEAMEAH E ++ L+ +NQKEFKIYRWNP
Sbjct: 1   MLKGWFRHAYNKVSKKRFGVLEEHPMAKQHAEEAMEAHGEIKSNLRFNNQKEFKIYRWNP 60

Query: 61  QYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNIDGAN 120
           QYPNHKPFLHSFF+DLS CGPMVLDALQ IKAEKDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  QYPNHKPFLHSFFLDLSKCGPMVLDALQMIKAEKDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTEDGREF 180
           TVACLKPIDADTSKPTIITPLPHM+VIKDLVVDLTNFYQQYKSIEPWLKTRRS E GREF
Sbjct: 121 TVACLKPIDADTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSIEPWLKTRRSAEGGREF 180

Query: 181 RQSRAERKKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHVYRWISDSRDEFEKER 240
           RQ+ AERKKLDGLYECILCACCS SCPPYWWNPEEFLGPAALLH YRWISDSRDEF++ER
Sbjct: 181 RQTPAERKKLDGLYECILCACCSTSCPPYWWNPEEFLGPAALLHAYRWISDSRDEFKEER 240

Query: 241 LQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAMHLISKSN 287
           LQAIAED+TKLYRCRTVKNCTA CPKSLDPSSAIHHMKAMHLIS+SN
Sbjct: 241 LQAIAEDETKLYRCRTVKNCTATCPKSLDPSSAIHHMKAMHLISRSN 287

[Close]

BLAST of HG10001930.1 vs. ExPASy Swiss-Prot
Match: Q9FJP9 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH2-3 PE=1 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 6.5e-114
Identity = 194/269 (72.12%), Postives = 224/269 (83.27%), Query Frame = 0


Query: 18  FGVLEAHPVAQQHAEEAMEAH---VETQNKLKSNQKEFKIYRWNPQYPNHKPFLHSFFVD 77
           F +L  H  AQ  +++ +++     E + + K  +KEFKIYRWNP  PN KPFL SFFVD
Sbjct: 32  FPILNGHKAAQDLSKDTLKSQDITKEKEGQHKEVKKEFKIYRWNPDKPNSKPFLQSFFVD 91

Query: 78  LSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNIDGANTVACLKPIDADTSKP 137
           LS+CGPMVLD LQKIKAE D+SLSYRRSCREGICGSC+MNIDG NTVACLKPI+ +TSKP
Sbjct: 92  LSSCGPMVLDVLQKIKAEDDASLSYRRSCREGICGSCSMNIDGTNTVACLKPINPNTSKP 151

Query: 138 TIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTEDGREFRQSRAERKKLDGLYE 197
           TIITPLPHM+VIKDLVVDLTNFYQQYKS+EPWLKTR+  +DGRE RQS  +RKKLDGLYE
Sbjct: 152 TIITPLPHMYVIKDLVVDLTNFYQQYKSMEPWLKTRKPPKDGREHRQSPKDRKKLDGLYE 211

Query: 198 CILCACCSASCPPYWWNPEEFLGPAALLHVYRWISDSRDEFEKERLQAIAEDKTKLYRCR 257
           CILCACC+ SCP YWWNPEEF GPAALL  YRWISDSRDE+ +ERLQAI E +TK+YRCR
Sbjct: 212 CILCACCTTSCPSYWWNPEEFPGPAALLQAYRWISDSRDEYREERLQAITESETKVYRCR 271

Query: 258 TVKNCTANCPKSLDPSSAIHHMKAMHLIS 284
            +KNCTA CPK L+P+SAI  MK+ HL+S
Sbjct: 272 AIKNCTATCPKGLNPASAILKMKSKHLLS 300

[Close]

BLAST of HG10001930.1 vs. ExPASy Swiss-Prot
Match: Q6H4G3 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH2-2 PE=1 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 6.5e-98
Identity = 171/289 (59.17%), Postives = 209/289 (72.32%), Query Frame = 0


Query: 14  AKTRFGVLEAHPVAQQHAEEAMEAHVETQNK-----------------LKSNQKEFKIYR 73
           A   F  L  HP A+ +A +A E       K                   S  KEF++YR
Sbjct: 22  ADGHFPSLRGHPAARANARDAAEKQAALAAKEEEIRDHRRGDAAAASPAPSTVKEFRVYR 81

Query: 74  WNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNID 133
           W+P  P+ +P L S+ VDL+ CGPMVLD LQKIKAE D++L++RRSCREGICGSC+M ID
Sbjct: 82  WSPDAPSRRPHLQSYHVDLATCGPMVLDVLQKIKAEHDATLAFRRSCREGICGSCSMCID 141

Query: 134 GANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTE-D 193
           G NTVACL+P+D DTS  T +TPLPHM+V++DLVVDLT+FYQQYKS+EPWLK +  T+ +
Sbjct: 142 GVNTVACLRPVDTDTSSATTVTPLPHMYVVRDLVVDLTSFYQQYKSVEPWLKRKTKTKTE 201

Query: 194 GREFRQSRAERKKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHVYRWISDSRDEF 253
             E  QS  ERK+LDGLYECILCACCSA+CP YWWN E FLGPAALLH YRW+SDSRDE+
Sbjct: 202 TTEHAQSPEERKRLDGLYECILCACCSAACPSYWWNAEAFLGPAALLHAYRWVSDSRDEY 261

Query: 254 EKERLQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAMHLISK 285
             ER+QA+AE   KLYRCR +K+CTA CPKSLDP++AI  MK +H + K
Sbjct: 262 AAERVQALAEGWDKLYRCRMIKSCTATCPKSLDPAAAISAMKTLHQLGK 310

[Close]

BLAST of HG10001930.1 vs. ExPASy Swiss-Prot
Match: Q9S827 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH2-1 PE=1 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 5.2e-87
Identity = 154/240 (64.17%), Postives = 186/240 (77.50%), Query Frame = 0


Query: 43  NKLKSNQKEFKIYRWNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRS 102
           +K  +N K F IYRW+P  P+ KP L  + VDLS+CGPMVLD L KIK E+D SL++RRS
Sbjct: 42  SKAGANTKTFSIYRWDPDSPSTKPHLKDYKVDLSDCGPMVLDVLLKIKNEQDPSLTFRRS 101

Query: 103 CREGICGSCAMNIDGANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKS 162
           CREGICGSCAMNIDG N +ACL  I + +S  T I+PLPHMFVIKDLVVD+TNFY QYKS
Sbjct: 102 CREGICGSCAMNIDGDNGLACLTKISSASSAST-ISPLPHMFVIKDLVVDMTNFYNQYKS 161

Query: 163 IEPWLKTRRS-TEDGREFRQSRAERKKLDGLYECILCACCSASCPPYWWNPEEFLGPAAL 222
           +EPWLK + +  + G+E  Q++A+R KLDG+YECILCACCS SCP YWWNPEE+LGPAAL
Sbjct: 162 VEPWLKRKDAPPQPGKEIPQTKADRAKLDGMYECILCACCSTSCPSYWWNPEEYLGPAAL 221

Query: 223 LHVYRWISDSRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAMHL 282
           LH  RWI DSRD+F KERL +I  D+ KLYRC T+KNCT  CPK L+P+  I  +K + L
Sbjct: 222 LHANRWIQDSRDQFTKERLDSI-NDEFKLYRCHTIKNCTHACPKGLNPAKHIDTIKKLQL 279

[Close]

BLAST of HG10001930.1 vs. ExPASy Swiss-Prot
Match: Q8LB02 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH2-2 PE=1 SV=2)

HSP 1 Score: 320.5 bits (820), Expect = 2.0e-86
Identity = 154/231 (66.67%), Postives = 180/231 (77.92%), Query Frame = 0


Query: 50  KEFKIYRWNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICG 109
           K F+IYRWNP  P  KP L  + +DL +CGPMVLDAL KIK E D SL++RRSCREGICG
Sbjct: 49  KTFQIYRWNPDNPG-KPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICG 108

Query: 110 SCAMNIDGANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKT 169
           SCAMNIDG N +ACL  I++  SK T ITPLPHMFVIKDLVVD+TNFY QYKSIEPWLK 
Sbjct: 109 SCAMNIDGCNGLACLTKIESG-SKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKR 168

Query: 170 RR-STEDGREFRQSRAERKKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHVYRWI 229
           +  ++  G+E  QS+ +R KLDG+YECILCACCS SCP YWWNPE +LGPAALLH  RWI
Sbjct: 169 KNPASVPGKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWI 228

Query: 230 SDSRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAM 280
           SDSRDE+ KERL+AI +D+ KLYRC T+ NC   CPK L+P   I H+K +
Sbjct: 229 SDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIKQL 276

[Close]

BLAST of HG10001930.1 vs. ExPASy Swiss-Prot
Match: Q8LBZ7 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH2-1 PE=1 SV=2)

HSP 1 Score: 318.9 bits (816), Expect = 5.7e-86
Identity = 154/234 (65.81%), Postives = 180/234 (76.92%), Query Frame = 0


Query: 47  SNQKEFKIYRWNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREG 106
           SN K F+IYRWNP  P  KP L ++ +DL +CGPMVLDAL KIK E D SL++RRSCREG
Sbjct: 47  SNLKTFQIYRWNPDNPG-KPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREG 106

Query: 107 ICGSCAMNIDGANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPW 166
           ICGSCAMNIDG N +ACL  I  D +  T ITPLPHMFVIKDLVVD+TNFY QYKSIEPW
Sbjct: 107 ICGSCAMNIDGCNGLACLTKIQ-DEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPW 166

Query: 167 LKTRR-STEDGREFRQSRAERKKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHVY 226
           LK +  ++   +E  QS+ +R KLDG+YECILCACCS SCP YWWNPE +LGPAALLH  
Sbjct: 167 LKRKTPASVPAKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHAN 226

Query: 227 RWISDSRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAM 280
           RWISDSRDE+ KERL+AI +D+ KLYRC T+ NC   CPK L+P   I H+K +
Sbjct: 227 RWISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIKQL 277

[Close]

BLAST of HG10001930.1 vs. ExPASy TrEMBL
Match: A0A5A7TNF4 (Iron-sulfur subunit of complex II OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005780 PE=3 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 4.1e-151
Identity = 258/287 (89.90%), Postives = 273/287 (95.12%), Query Frame = 0


Query: 1   MLKSWFRHGYNKVAKTRFGVLEAHPVAQQHAEEAMEAHVETQNKLK-SNQKEFKIYRWNP 60
           MLKSWFRH YNKV+K RFGVLE HP+A+QHAEEAMEAH E ++ L+ +NQKEFKIYRWNP
Sbjct: 1   MLKSWFRHAYNKVSKQRFGVLEEHPMAKQHAEEAMEAHGEIKSNLRFNNQKEFKIYRWNP 60

Query: 61  QYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNIDGAN 120
           QYPNHKPFLHSFF+DLS CGPMVLDALQ IKAEKDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  QYPNHKPFLHSFFLDLSKCGPMVLDALQMIKAEKDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTEDGREF 180
           TVACLKPIDADTSKPTIITPLPHM+VIKDLVVDLTNFYQQYKSIEPWLKTRRS E GREF
Sbjct: 121 TVACLKPIDADTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSIEPWLKTRRSAEGGREF 180

Query: 181 RQSRAERKKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHVYRWISDSRDEFEKER 240
           RQ+ AERKKLDGLYECILCACCSASCPPYWWNPEEF+GPAALLH YRWISDSRDEF+KER
Sbjct: 181 RQTPAERKKLDGLYECILCACCSASCPPYWWNPEEFIGPAALLHAYRWISDSRDEFKKER 240

Query: 241 LQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAMHLISKSN 287
           LQAIAEDKTKLYRCRTV+NCTANCPKSLDPSSAIH+MKAMHLI +SN
Sbjct: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSSAIHNMKAMHLIFRSN 287

[Close]

BLAST of HG10001930.1 vs. ExPASy TrEMBL
Match: A0A1S3BY85 (Iron-sulfur subunit of complex II OS=Cucumis melo OX=3656 GN=LOC103494868 PE=3 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 4.1e-151
Identity = 258/287 (89.90%), Postives = 273/287 (95.12%), Query Frame = 0


Query: 1   MLKSWFRHGYNKVAKTRFGVLEAHPVAQQHAEEAMEAHVETQNKLK-SNQKEFKIYRWNP 60
           MLKSWFRH YNKV+K RFGVLE HP+A+QHAEEAMEAH E ++ L+ +NQKEFKIYRWNP
Sbjct: 1   MLKSWFRHAYNKVSKQRFGVLEEHPMAKQHAEEAMEAHGEIKSNLRFNNQKEFKIYRWNP 60

Query: 61  QYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNIDGAN 120
           QYPNHKPFLHSFF+DLS CGPMVLDALQ IKAEKDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  QYPNHKPFLHSFFLDLSKCGPMVLDALQMIKAEKDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTEDGREF 180
           TVACLKPIDADTSKPTIITPLPHM+VIKDLVVDLTNFYQQYKSIEPWLKTRRS E GREF
Sbjct: 121 TVACLKPIDADTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSIEPWLKTRRSAEGGREF 180

Query: 181 RQSRAERKKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHVYRWISDSRDEFEKER 240
           RQ+ AERKKLDGLYECILCACCSASCPPYWWNPEEF+GPAALLH YRWISDSRDEF+KER
Sbjct: 181 RQTPAERKKLDGLYECILCACCSASCPPYWWNPEEFIGPAALLHAYRWISDSRDEFKKER 240

Query: 241 LQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAMHLISKSN 287
           LQAIAEDKTKLYRCRTV+NCTANCPKSLDPSSAIH+MKAMHLI +SN
Sbjct: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSSAIHNMKAMHLIFRSN 287

[Close]

BLAST of HG10001930.1 vs. ExPASy TrEMBL
Match: A0A5D3CZM3 (Iron-sulfur subunit of complex II OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005770 PE=3 SV=1)

HSP 1 Score: 543.5 bits (1399), Expect = 5.3e-151
Identity = 257/287 (89.55%), Postives = 271/287 (94.43%), Query Frame = 0


Query: 1   MLKSWFRHGYNKVAKTRFGVLEAHPVAQQHAEEAMEAHVETQNKLK-SNQKEFKIYRWNP 60
           MLK WFRH YNKV+K RFGVLE HP+A+QHAEEAMEAH E ++ L+ +NQKEFKIYRWNP
Sbjct: 1   MLKGWFRHAYNKVSKKRFGVLEEHPIAKQHAEEAMEAHGEIKSNLRFNNQKEFKIYRWNP 60

Query: 61  QYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNIDGAN 120
           QYPNHKPFLHSFF+DLS CGPMVLDALQ IKAEKDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  QYPNHKPFLHSFFLDLSKCGPMVLDALQMIKAEKDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTEDGREF 180
           TVACLKPIDADTSKPTIITPLPHM+VIKDLVVDLTNFYQQYKSIEPWLKTRRS E GREF
Sbjct: 121 TVACLKPIDADTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSIEPWLKTRRSAEGGREF 180

Query: 181 RQSRAERKKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHVYRWISDSRDEFEKER 240
           RQ+ AERKKLDGLYECILCACCS SCPPYWWNPEEFLGPAALLH YRWISDSRDEF++ER
Sbjct: 181 RQTPAERKKLDGLYECILCACCSTSCPPYWWNPEEFLGPAALLHAYRWISDSRDEFKEER 240

Query: 241 LQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAMHLISKSN 287
           LQAIAED+TKLYRCRTVKNCTA CPKSLDPSSAIHHMKAMHLIS+SN
Sbjct: 241 LQAIAEDETKLYRCRTVKNCTATCPKSLDPSSAIHHMKAMHLISRSN 287

[Close]

BLAST of HG10001930.1 vs. ExPASy TrEMBL
Match: A0A1S3BZX5 (Iron-sulfur subunit of complex II OS=Cucumis melo OX=3656 GN=LOC103494867 PE=3 SV=1)

HSP 1 Score: 543.5 bits (1399), Expect = 5.3e-151
Identity = 257/287 (89.55%), Postives = 271/287 (94.43%), Query Frame = 0


Query: 1   MLKSWFRHGYNKVAKTRFGVLEAHPVAQQHAEEAMEAHVETQNKLK-SNQKEFKIYRWNP 60
           MLK WFRH YNKV+K RFGVLE HP+A+QHAEEAMEAH E ++ L+ +NQKEFKIYRWNP
Sbjct: 1   MLKGWFRHAYNKVSKKRFGVLEEHPIAKQHAEEAMEAHGEIKSNLRFNNQKEFKIYRWNP 60

Query: 61  QYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNIDGAN 120
           QYPNHKPFLHSFF+DLS CGPMVLDALQ IKAEKDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  QYPNHKPFLHSFFLDLSKCGPMVLDALQMIKAEKDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTEDGREF 180
           TVACLKPIDADTSKPTIITPLPHM+VIKDLVVDLTNFYQQYKSIEPWLKTRRS E GREF
Sbjct: 121 TVACLKPIDADTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSIEPWLKTRRSAEGGREF 180

Query: 181 RQSRAERKKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHVYRWISDSRDEFEKER 240
           RQ+ AERKKLDGLYECILCACCS SCPPYWWNPEEFLGPAALLH YRWISDSRDEF++ER
Sbjct: 181 RQTPAERKKLDGLYECILCACCSTSCPPYWWNPEEFLGPAALLHAYRWISDSRDEFKEER 240

Query: 241 LQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAMHLISKSN 287
           LQAIAED+TKLYRCRTVKNCTA CPKSLDPSSAIHHMKAMHLIS+SN
Sbjct: 241 LQAIAEDETKLYRCRTVKNCTATCPKSLDPSSAIHHMKAMHLISRSN 287

[Close]

BLAST of HG10001930.1 vs. ExPASy TrEMBL
Match: A0A5A7TT90 (Iron-sulfur subunit of complex II OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00050 PE=3 SV=1)

HSP 1 Score: 542.7 bits (1397), Expect = 9.0e-151
Identity = 257/287 (89.55%), Postives = 271/287 (94.43%), Query Frame = 0


Query: 1   MLKSWFRHGYNKVAKTRFGVLEAHPVAQQHAEEAMEAHVETQNKLK-SNQKEFKIYRWNP 60
           MLK WFRH YNKV+K RFGVLE HP+A+QHAEEAMEAH E ++ L+ +NQKEFKIYRWNP
Sbjct: 1   MLKGWFRHAYNKVSKKRFGVLEEHPMAKQHAEEAMEAHGEIKSNLRFNNQKEFKIYRWNP 60

Query: 61  QYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNIDGAN 120
           QYPNHKPFLHSFF+DLS CGPMVLDALQ IKAEKDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  QYPNHKPFLHSFFLDLSKCGPMVLDALQMIKAEKDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTEDGREF 180
           TVACLKPIDADTSKPTIITPLPHM+VIKDLVVDLTNFYQQYKSIEPWLKTRRS E GREF
Sbjct: 121 TVACLKPIDADTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSIEPWLKTRRSAEGGREF 180

Query: 181 RQSRAERKKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHVYRWISDSRDEFEKER 240
           RQ+ AERKKLDGLYECILCACCS SCPPYWWNPEEFLGPAALLH YRWISDSRDEF++ER
Sbjct: 181 RQTPAERKKLDGLYECILCACCSTSCPPYWWNPEEFLGPAALLHAYRWISDSRDEFKEER 240

Query: 241 LQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAMHLISKSN 287
           LQAIAED+TKLYRCRTVKNCTA CPKSLDPSSAIHHMKAMHLIS+SN
Sbjct: 241 LQAIAEDETKLYRCRTVKNCTATCPKSLDPSSAIHHMKAMHLISRSN 287

[Close]

BLAST of HG10001930.1 vs. TAIR 10
Match: AT5G65165.1 (succinate dehydrogenase 2-3 )

HSP 1 Score: 411.8 bits (1057), Expect = 4.6e-115
Identity = 194/269 (72.12%), Postives = 224/269 (83.27%), Query Frame = 0


Query: 18  FGVLEAHPVAQQHAEEAMEAH---VETQNKLKSNQKEFKIYRWNPQYPNHKPFLHSFFVD 77
           F +L  H  AQ  +++ +++     E + + K  +KEFKIYRWNP  PN KPFL SFFVD
Sbjct: 32  FPILNGHKAAQDLSKDTLKSQDITKEKEGQHKEVKKEFKIYRWNPDKPNSKPFLQSFFVD 91

Query: 78  LSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNIDGANTVACLKPIDADTSKP 137
           LS+CGPMVLD LQKIKAE D+SLSYRRSCREGICGSC+MNIDG NTVACLKPI+ +TSKP
Sbjct: 92  LSSCGPMVLDVLQKIKAEDDASLSYRRSCREGICGSCSMNIDGTNTVACLKPINPNTSKP 151

Query: 138 TIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTEDGREFRQSRAERKKLDGLYE 197
           TIITPLPHM+VIKDLVVDLTNFYQQYKS+EPWLKTR+  +DGRE RQS  +RKKLDGLYE
Sbjct: 152 TIITPLPHMYVIKDLVVDLTNFYQQYKSMEPWLKTRKPPKDGREHRQSPKDRKKLDGLYE 211

Query: 198 CILCACCSASCPPYWWNPEEFLGPAALLHVYRWISDSRDEFEKERLQAIAEDKTKLYRCR 257
           CILCACC+ SCP YWWNPEEF GPAALL  YRWISDSRDE+ +ERLQAI E +TK+YRCR
Sbjct: 212 CILCACCTTSCPSYWWNPEEFPGPAALLQAYRWISDSRDEYREERLQAITESETKVYRCR 271

Query: 258 TVKNCTANCPKSLDPSSAIHHMKAMHLIS 284
            +KNCTA CPK L+P+SAI  MK+ HL+S
Sbjct: 272 AIKNCTATCPKGLNPASAILKMKSKHLLS 300

[Close]

BLAST of HG10001930.1 vs. TAIR 10
Match: AT5G40650.1 (succinate dehydrogenase 2-2 )

HSP 1 Score: 320.5 bits (820), Expect = 1.4e-87
Identity = 154/231 (66.67%), Postives = 180/231 (77.92%), Query Frame = 0


Query: 50  KEFKIYRWNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICG 109
           K F+IYRWNP  P  KP L  + +DL +CGPMVLDAL KIK E D SL++RRSCREGICG
Sbjct: 49  KTFQIYRWNPDNPG-KPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICG 108

Query: 110 SCAMNIDGANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKT 169
           SCAMNIDG N +ACL  I++  SK T ITPLPHMFVIKDLVVD+TNFY QYKSIEPWLK 
Sbjct: 109 SCAMNIDGCNGLACLTKIESG-SKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKR 168

Query: 170 RR-STEDGREFRQSRAERKKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHVYRWI 229
           +  ++  G+E  QS+ +R KLDG+YECILCACCS SCP YWWNPE +LGPAALLH  RWI
Sbjct: 169 KNPASVPGKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWI 228

Query: 230 SDSRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAM 280
           SDSRDE+ KERL+AI +D+ KLYRC T+ NC   CPK L+P   I H+K +
Sbjct: 229 SDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIKQL 276

[Close]

BLAST of HG10001930.1 vs. TAIR 10
Match: AT3G27380.1 (succinate dehydrogenase 2-1 )

HSP 1 Score: 318.9 bits (816), Expect = 4.1e-87
Identity = 154/234 (65.81%), Postives = 180/234 (76.92%), Query Frame = 0


Query: 47  SNQKEFKIYRWNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREG 106
           SN K F+IYRWNP  P  KP L ++ +DL +CGPMVLDAL KIK E D SL++RRSCREG
Sbjct: 47  SNLKTFQIYRWNPDNPG-KPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREG 106

Query: 107 ICGSCAMNIDGANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPW 166
           ICGSCAMNIDG N +ACL  I  D +  T ITPLPHMFVIKDLVVD+TNFY QYKSIEPW
Sbjct: 107 ICGSCAMNIDGCNGLACLTKIQ-DEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPW 166

Query: 167 LKTRR-STEDGREFRQSRAERKKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHVY 226
           LK +  ++   +E  QS+ +R KLDG+YECILCACCS SCP YWWNPE +LGPAALLH  
Sbjct: 167 LKRKTPASVPAKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHAN 226

Query: 227 RWISDSRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAM 280
           RWISDSRDE+ KERL+AI +D+ KLYRC T+ NC   CPK L+P   I H+K +
Sbjct: 227 RWISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIKQL 277

[Close]

BLAST of HG10001930.1 vs. TAIR 10
Match: AT3G27380.2 (succinate dehydrogenase 2-1 )

HSP 1 Score: 318.9 bits (816), Expect = 4.1e-87
Identity = 154/234 (65.81%), Postives = 180/234 (76.92%), Query Frame = 0


Query: 47  SNQKEFKIYRWNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREG 106
           SN K F+IYRWNP  P  KP L ++ +DL +CGPMVLDAL KIK E D SL++RRSCREG
Sbjct: 47  SNLKTFQIYRWNPDNPG-KPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREG 106

Query: 107 ICGSCAMNIDGANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPW 166
           ICGSCAMNIDG N +ACL  I  D +  T ITPLPHMFVIKDLVVD+TNFY QYKSIEPW
Sbjct: 107 ICGSCAMNIDGCNGLACLTKIQ-DEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPW 166

Query: 167 LKTRR-STEDGREFRQSRAERKKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHVY 226
           LK +  ++   +E  QS+ +R KLDG+YECILCACCS SCP YWWNPE +LGPAALLH  
Sbjct: 167 LKRKTPASVPAKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHAN 226

Query: 227 RWISDSRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAM 280
           RWISDSRDE+ KERL+AI +D+ KLYRC T+ NC   CPK L+P   I H+K +
Sbjct: 227 RWISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIKQL 277

The following BLAST results are available for this feature:

BLAST of HG10001930.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875058.1	5.2e-153	91.07	succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Benin...	[more]
XP_008454472.1	8.4e-151	89.90	PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochond...	[more]
XP_008454471.1	1.1e-150	89.55	PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochond...	[more]
XP_004146922.1	1.9e-150	90.28	succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Cucum...	[more]
KAA0044721.1	1.9e-150	89.55	succinate dehydrogenase (ubiquinone) iron-sulfur subunit 3 [Cucumis melo var. ma...	[more]

BLAST of HG10001930.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJP9	6.5e-114	72.12	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial OS=Ara...	[more]
Q6H4G3	6.5e-98	59.17	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Ory...	[more]
Q9S827	5.2e-87	64.17	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Ory...	[more]
Q8LB02	2.0e-86	66.67	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Ara...	[more]
Q8LBZ7	5.7e-86	65.81	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Ara...	[more]

BLAST of HG10001930.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TNF4	4.1e-151	89.90	Iron-sulfur subunit of complex II OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BY85	4.1e-151	89.90	Iron-sulfur subunit of complex II OS=Cucumis melo OX=3656 GN=LOC103494868 PE=3 S...	[more]
A0A5D3CZM3	5.3e-151	89.55	Iron-sulfur subunit of complex II OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BZX5	5.3e-151	89.55	Iron-sulfur subunit of complex II OS=Cucumis melo OX=3656 GN=LOC103494867 PE=3 S...	[more]
A0A5A7TT90	9.0e-151	89.55	Iron-sulfur subunit of complex II OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of HG10001930.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65165.1	4.6e-115	72.12	succinate dehydrogenase 2-3	[more]
AT5G40650.1	1.4e-87	66.67	succinate dehydrogenase 2-2	[more]
AT3G27380.1	4.1e-87	65.81	succinate dehydrogenase 2-1	[more]
AT3G27380.2	4.1e-87	65.81	succinate dehydrogenase 2-1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 31..51
None	No IPR available	PFAM	PF13534	Fer4_17	coord: 194..268 e-value: 5.7E-8 score: 33.2
None	No IPR available	PANTHER	PTHR11921:SF40	SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR SUBUNIT 3, MITOCHONDRIAL	coord: 4..285
None	No IPR available	PANTHER	PTHR11921	SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN	coord: 4..285
None	No IPR available	SUPERFAMILY	46548	alpha-helical ferredoxin	coord: 154..280
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 39..152 e-value: 4.2E-40 score: 138.1
IPR004489	Succinate dehydrogenase/fumarate reductase iron-sulphur protein	TIGRFAM	TIGR00384	TIGR00384	coord: 54..277 e-value: 4.0E-79 score: 263.1
IPR025192	Succinate dehydogenase/fumarate reductase N-terminal	PFAM	PF13085	Fer2_3	coord: 52..157 e-value: 9.6E-31 score: 106.0
IPR009051	Alpha-helical ferredoxin	GENE3D	1.10.1060.10		coord: 153..287 e-value: 7.9E-45 score: 153.8
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 103..111
IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	PROSITE	PS00198	4FE4S_FER_1	coord: 195..206
IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	PROSITE	PS51379	4FE4S_FER_2	coord: 185..215 score: 7.499944
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 50..143 score: 8.639751
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 48..152

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10001930	HG10001930	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10001930.1-cds	HG10001930.1-cds-Chr11:1788068..1788239	CDS
HG10001930.1-cds	HG10001930.1-cds-Chr11:1788661..1788870	CDS
HG10001930.1-cds	HG10001930.1-cds-Chr11:1789129..1789367	CDS
HG10001930.1-cds	HG10001930.1-cds-Chr11:1790193..1790435	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10001930.1	HG10001930.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006099	tricarboxylic acid cycle
biological_process	GO:0022904	respiratory electron transport chain
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0045273	respiratory chain complex II
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0051538	3 iron, 4 sulfur cluster binding
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008177	succinate dehydrogenase (ubiquinone) activity