Cucsat.G9808.T19 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G9808.T19
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionPentatricopeptide repeat-containing protein
Locationctg1673: 13696 .. 15969 (+)
RNA-Seq ExpressionCucsat.G9808.T19
SyntenyCucsat.G9808.T19
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTTCTTACTTCCTTTCCATTTTATAGTATGATTGTTGATCCATAATTTCAGTGTAGTAGTTCAATGCTTGGGAAATTTCTCTTTTTCCAGATGGAGAAGGCTGAACAAATACTGGATGAGATGACGTTAGCTGGTGTAAGTCCAAATGAACACACATACACAACCATCATGCATGGTTATGCTTCTTTAGGCGATACAGGAAAAGCATTCGCTTACTTCACTAAACTGAGGGATGAGGGTCTGCAGCTTGATGTTTATACATATGAAGCATTGCTCAAAGCATGCTGCAAATCAGGCAGAATGCAGAGTGCATTGGCAGTCACCAAGGAAATGAGTGCTCAAAATATTCCAAGAAACACCTTCATTTATAACATTTTAATTGACGGGTATGCCATCCTAGATGTATTAGTTTCTGATTATTTTGATGTTTCACTCTTGTAATACATTGAATTAATTATCTTTTTCCATGTAGATGGGCTCGACGAGGCGACGTTTGGGAGGCAGCTGATCTAATGCAACAAATGAAACGAGAAGGGGTTCAACCTGACATCCATACATACACGTCCTTCATTAATGCTTGTTCCAAGGCTGGAGATATGCAGGTATCCTGCTAAAATAGCACATCTTTTTTAGTTTATAGAACCCGCTTAACCTGTCTTTGTTCATAGAACAAACTTATTCGTCTATTCAAAAGTTAAAACTAAGCTTTTACTGAGATAAGCGAGGATACGGATTGCACCAATATAAAAAGAACAAAAGCTCACTGCAAAAAGGACTCCAATTGGGTTTGAGGGAATGAAACAACGTGAAAACTATGAAAAGGACTCTAATTTTTGTTTTCTTATGAAATATTGGGCTGAGGAAAACAGTAAATTTTTTAAAGTTTTAGGAGTCCTTGGTAAAAGTAAAATGTGCGGTGGCCTATGCCTAGATTTTACAGCTCTAAGCATTTTGGTAACTATCCTTCCACTCATATTTAGTTAGTATTTTAGGTTCATCAAACACCATCCCTTCATCAATCCTTCCATTTACCTACTATCTTGGCATGTTTCCAATTCTAACCGGTTAACCATTTTCCAGAGAGCAACAAAAACAATTGAAGAAATGAAATCTGTAGGAGTGAAGCCTAATGTTAAAACATATACTACACTGATTAATGGTTGGGCCCGTGCCTCATTACCAGAGAAGGCACTATCATGTTTTGAAGAGATGAAGCTATCTGGGTTAAAACCAGACAGAGCTGTTTACCATTGTCTGATGACGTCGTTACTTTCGAGGGCCACTGTTGCACATGGATGCATTTACCCTGGCATTCTTTCTGTTTGTAGAGAGATGGTTGATTGTGAACTAACAGTGGATATGGGAACAGCAGTTCACTGGTCCAAGTGTTTGCTCAAAATTGAGAGAACTGGTGGGGAGATTACTGAAGCCTTGCAGAAGACCTTCCCTCCAAACTGGAATGTGTATAATAATACCCTCACTAACTCCAACATAGACTCGGACGACGAATCCGACATAAGTGACGACGAGGATGATGACATATGCCAGGAGGGAGCATCATCTAATGCTGGTGATGATGGTGAAAGCGATGGCGATGTAGTTGGCAGATCATGGTTTTGAGAGCCTGCAAATAGAATCCCACTGTTCAATGGTTAGTAGTTTGGTTTGGCCCTACTACTTTATTCACGGAGCCAACCATTTGGGTTGAAATTACATTCTTTTATGTATAGGCTTTTCAATTTGTAATAGTTCCCTATGTAAATCTATTGGGGTACTTCCTGTTTAAAAGACAGTACGCTAGTGGAAGGAACGGTGAAAACTGAAAACTTAAAAAGGGCAAATCAAACTTGAGAGATTCAAAGGTTTGATTTGTTACTCAGAAGTGTAGGTTTTAACCAGTTTGACTATGTGACCGAATTGGTTATAACAAAATGGTATTGAGACTTATCTTCCTAAGCTACATCATTGATTTGACATTTTCAAACTGAAAAGAAACTAACATTGTTGATTTTGAAGATAAGGAAGGATTTCACGTGGTTCCACCAAACAGCATTGGAGAGATTCTAACATGTTCTTCCCACAACTGCCCTAAGCTCCATCAAGGAAACAAAGTGGGGTTTTAAAAATCAAGCCTATCTCAAGCTGCAATGTGAAGGTATTGTTGAATCTTTGCCTAATTTTTGCATTTGAGTTTTATTCTTGAATTCAAACAAACAGTCTAGAAATGGACAAAAAAGAACAGTGGTTGGTTTAAGTATCCTTATCTGTTGGA

Coding sequence (CDS)

ATGCTTGGGAAATTTCTCTTTTTCCAGATGGAGAAGGCTGAACAAATACTGGATGAGATGACGTTAGCTGGTGTAAGTCCAAATGAACACACATACACAACCATCATGCATGGTTATGCTTCTTTAGGCGATACAGGAAAAGCATTCGCTTACTTCACTAAACTGAGGGATGAGGGTCTGCAGCTTGATGTTTATACATATGAAGCATTGCTCAAAGCATGCTGCAAATCAGGCAGAATGCAGAGTGCATTGGCAGTCACCAAGGAAATGAGTGCTCAAAATATTCCAAGAAACACCTTCATTTATAACATTTTAATTGACGGATGGGCTCGACGAGGCGACGTTTGGGAGGCAGCTGATCTAATGCAACAAATGAAACGAGAAGGGGTTCAACCTGACATCCATACATACACGTCCTTCATTAATGCTTGTTCCAAGGCTGGAGATATGCAGAGAGCAACAAAAACAATTGAAGAAATGAAATCTGTAGGAGTGAAGCCTAATGTTAAAACATATACTACACTGATTAATGGTTGGGCCCGTGCCTCATTACCAGAGAAGGCACTATCATGTTTTGAAGAGATGAAGCTATCTGGGTTAAAACCAGACAGAGCTGTTTACCATTGTCTGATGACGTCGTTACTTTCGAGGGCCACTGTTGCACATGGATGCATTTACCCTGGCATTCTTTCTGTTTGTAGAGAGATGGTTGATTGTGAACTAACAGTGGATATGGGAACAGCAGTTCACTGGTCCAAGTGTTTGCTCAAAATTGAGAGAACTGGTGGGGAGATTACTGAAGCCTTGCAGAAGACCTTCCCTCCAAACTGGAATGTGTATAATAATACCCTCACTAACTCCAACATAGACTCGGACGACGAATCCGACATAAGTGACGACGAGGATGATGACATATGCCAGGAGGGAGCATCATCTAATGCTGGTGATGATGGTGAAAGCGATGGCGATGTAGTTGGCAGATCATGGTTTTGA

Protein sequence

MLGKFLFFQMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVCREMVDCELTVDMGTAVHWSKCLLKIERTGGEITEALQKTFPPNWNVYNNTLTNSNIDSDDESDISDDEDDDICQEGASSNAGDDGESDGDVVGRSWF
Homology
BLAST of Cucsat.G9808.T19 vs. ExPASy Swiss-Prot
Match: Q0WMY5 (Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPR4 PE=1 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 1.3e-129
Identity = 228/316 (72.15%), Postives = 270/316 (85.44%), Query Frame = 0

Query: 9   QMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYE 68
           QMEKA +ILDEMTLAGVS NEHTYT IM GYAS+GDTGKAF YFT+L++EGL +D++TYE
Sbjct: 639 QMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYE 698

Query: 69  ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 128
           ALLKACCKSGRMQSALAVTKEMSA+NIPRN+F+YNILIDGWARRGDVWEAADL+QQMK+E
Sbjct: 699 ALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKE 758

Query: 129 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKA 188
           GV+PDIHTYTSFI+ACSKAGDM RAT+TIEEM+++GVKPN+KTYTTLI GWARASLPEKA
Sbjct: 759 GVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKA 818

Query: 189 LSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVCREMVDCELTVDMGTA 248
           LSC+EEMK  G+KPD+AVYHCL+TSLLSRA++A   IY G++++C+EMV+  L VDMGTA
Sbjct: 819 LSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDMGTA 878

Query: 249 VHWSKCLLKIERTGGEITEALQKTFPPNWNVYNNTLTNSNIDSDDESDISDDEDDDICQE 308
           VHWSKCL KIE +GGE+TE LQKTFPP+W+ ++    + +   D  SD+  DEDD     
Sbjct: 879 VHWSKCLCKIEASGGELTETLQKTFPPDWSSHH----HHHGFLDQVSDVDSDEDD----- 938

Query: 309 GASSNAGDDGESDGDV 325
                 G+DGE D DV
Sbjct: 939 ----VDGEDGEDDEDV 941

BLAST of Cucsat.G9808.T19 vs. ExPASy Swiss-Prot
Match: Q9FIX3 (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX=3702 GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.8e-30
Identity = 70/205 (34.15%), Postives = 111/205 (54.15%), Query Frame = 0

Query: 10  MEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYEA 69
           M +A + LD+M + G+ PNE TYTT++ G++  G   +A+    ++ D G    V TY A
Sbjct: 361 MNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNA 420

Query: 70  LLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKREG 129
           L+   C +G+M+ A+AV ++M  + +  +   Y+ ++ G+ R  DV EA  + ++M  +G
Sbjct: 421 LINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKG 480

Query: 130 VQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKAL 189
           ++PD  TY+S I    +    + A    EEM  VG+ P+  TYT LIN +      EKAL
Sbjct: 481 IKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKAL 540

Query: 190 SCFEEMKLSGLKPDRAVYHCLMTSL 215
               EM   G+ PD   Y  L+  L
Sbjct: 541 QLHNEMVEKGVLPDVVTYSVLINGL 565

BLAST of Cucsat.G9808.T19 vs. ExPASy Swiss-Prot
Match: Q9FMQ1 (Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g12100 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.7e-30
Identity = 65/204 (31.86%), Postives = 115/204 (56.37%), Query Frame = 0

Query: 9   QMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYE 68
           +ME AE+ +++M L GVSP+  TY  ++ GY    +  K F    ++ D G   +V +Y 
Sbjct: 439 EMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYG 498

Query: 69  ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 128
            L+   CK  ++  A  V ++M  + +     IYN+LIDG   +G + +A    ++M ++
Sbjct: 499 TLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKK 558

Query: 129 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKA 188
           G++ ++ TY + I+  S  G +  A   + E+   G+KP+V TY +LI+G+  A   ++ 
Sbjct: 559 GIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRC 618

Query: 189 LSCFEEMKLSGLKPDRAVYHCLMT 213
           ++ +EEMK SG+KP    YH L++
Sbjct: 619 IALYEEMKRSGIKPTLKTYHLLIS 642

BLAST of Cucsat.G9808.T19 vs. ExPASy Swiss-Prot
Match: Q76C99 (Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 8.8e-30
Identity = 76/219 (34.70%), Postives = 116/219 (52.97%), Query Frame = 0

Query: 9   QMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYE 68
           ++++A  +  +M   G++PN  TY  ++      G    A  YF ++ DEGL      Y 
Sbjct: 386 KVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYN 445

Query: 69  ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 128
           +L+   C   + + A  +  EM  + I  NT  +N +ID   + G V E+  L + M R 
Sbjct: 446 SLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRI 505

Query: 129 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKA 188
           GV+P++ TY + IN    AG M  A K +  M SVG+KPN  TY+TLING+ + S  E A
Sbjct: 506 GVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDA 565

Query: 189 LSCFEEMKLSGLKPDRAVYHCLMTSLL-SRATVAHGCIY 227
           L  F+EM+ SG+ PD   Y+ ++  L  +R T A   +Y
Sbjct: 566 LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 604

BLAST of Cucsat.G9808.T19 vs. ExPASy Swiss-Prot
Match: Q84ZD2 (Pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0548300 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.0e-29
Identity = 78/255 (30.59%), Postives = 133/255 (52.16%), Query Frame = 0

Query: 9   QMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYE 68
           + +KA  +L EM  +GV P+ H Y  ++  +      G A   F ++R+EG++ DV T+ 
Sbjct: 377 EWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWN 436

Query: 69  ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILID--GWARRGDVWEAAD-LMQQM 128
            L+ A CK GR   A+ +  EM   N P  T  YNI+I+  G  +R   WE  + ++ +M
Sbjct: 437 TLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQR---WEGVEAMLAEM 496

Query: 129 KREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLP 188
           K +G+ P+I TYT+ ++   ++G  + A   IE MK+ G+KP+   Y  L+N +A+  L 
Sbjct: 497 KEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLA 556

Query: 189 EKALSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVCREMVDCELTVDM 248
           + AL+  + M+  GL+    V + L+ +      +A         SV + M +  L  D+
Sbjct: 557 DHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEA------FSVLQFMKENGLRPDV 616

Query: 249 GTAVHWSKCLLKIER 261
            T     K L+++E+
Sbjct: 617 ITYTTLMKALIRVEQ 622

BLAST of Cucsat.G9808.T19 vs. NCBI nr
Match: XP_004135367.2 (pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Cucumis sativus] >KAE8648815.1 hypothetical protein Csa_007917 [Cucumis sativus])

HSP 1 Score: 644 bits (1662), Expect = 1.66e-223
Identity = 319/322 (99.07%), Postives = 321/322 (99.69%), Query Frame = 0

Query: 9   QMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYE 68
           +MEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAF YFTKLRDEGLQLDVYTYE
Sbjct: 641 KMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTYE 700

Query: 69  ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 128
           ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGD+WEAADLMQQMKRE
Sbjct: 701 ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDIWEAADLMQQMKRE 760

Query: 129 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKA 188
           GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKA
Sbjct: 761 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKA 820

Query: 189 LSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVCREMVDCELTVDMGTA 248
           LSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVCREMVDCELTVDMGTA
Sbjct: 821 LSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVCREMVDCELTVDMGTA 880

Query: 249 VHWSKCLLKIERTGGEITEALQKTFPPNWNVYNNTLTNSNIDSDDESDISDDEDDDICQE 308
           VHWSKCLLKIERTGGEITEALQKTFPPNWNVYNNTLTNSNIDSDDESDISDDEDDDICQE
Sbjct: 881 VHWSKCLLKIERTGGEITEALQKTFPPNWNVYNNTLTNSNIDSDDESDISDDEDDDICQE 940

Query: 309 GASSNAGDDGESDGDVVGRSWF 330
           GASSNAGDDGESDGDVVGRSWF
Sbjct: 941 GASSNAGDDGESDGDVVGRSWF 962

BLAST of Cucsat.G9808.T19 vs. NCBI nr
Match: KAA0034647.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK09199.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 632 bits (1629), Expect = 1.65e-218
Identity = 314/322 (97.52%), Postives = 319/322 (99.07%), Query Frame = 0

Query: 9   QMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYE 68
           +MEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGL LDVYTYE
Sbjct: 642 KMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLGLDVYTYE 701

Query: 69  ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 128
           ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE
Sbjct: 702 ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 761

Query: 129 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKA 188
           GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLI+GWARASLPEKA
Sbjct: 762 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLIHGWARASLPEKA 821

Query: 189 LSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVCREMVDCELTVDMGTA 248
           LSCFEEMKLSGLKPD+AVYHCLMTSLLSRATVA GCIYPGILSVCREMVDCELTVDMGTA
Sbjct: 822 LSCFEEMKLSGLKPDKAVYHCLMTSLLSRATVAQGCIYPGILSVCREMVDCELTVDMGTA 881

Query: 249 VHWSKCLLKIERTGGEITEALQKTFPPNWNVYNNTLTNSNIDSDDESDISDDEDDDICQE 308
           VHWSKCLLKIERTGGEITEALQKTFPPNWN+YNNTLT+SNIDSDDESDISDDEDDDICQ 
Sbjct: 882 VHWSKCLLKIERTGGEITEALQKTFPPNWNLYNNTLTSSNIDSDDESDISDDEDDDICQG 941

Query: 309 GASSNAGDDGESDGDVVGRSWF 330
           GASSNAGDDGESDGDVVGRSWF
Sbjct: 942 GASSNAGDDGESDGDVVGRSWF 963

BLAST of Cucsat.G9808.T19 vs. NCBI nr
Match: XP_008446749.1 (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Cucumis melo])

HSP 1 Score: 632 bits (1629), Expect = 2.91e-218
Identity = 314/322 (97.52%), Postives = 319/322 (99.07%), Query Frame = 0

Query: 9   QMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYE 68
           +MEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGL LDVYTYE
Sbjct: 661 KMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLGLDVYTYE 720

Query: 69  ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 128
           ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE
Sbjct: 721 ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 780

Query: 129 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKA 188
           GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLI+GWARASLPEKA
Sbjct: 781 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLIHGWARASLPEKA 840

Query: 189 LSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVCREMVDCELTVDMGTA 248
           LSCFEEMKLSGLKPD+AVYHCLMTSLLSRATVA GCIYPGILSVCREMVDCELTVDMGTA
Sbjct: 841 LSCFEEMKLSGLKPDKAVYHCLMTSLLSRATVAQGCIYPGILSVCREMVDCELTVDMGTA 900

Query: 249 VHWSKCLLKIERTGGEITEALQKTFPPNWNVYNNTLTNSNIDSDDESDISDDEDDDICQE 308
           VHWSKCLLKIERTGGEITEALQKTFPPNWN+YNNTLT+SNIDSDDESDISDDEDDDICQ 
Sbjct: 901 VHWSKCLLKIERTGGEITEALQKTFPPNWNLYNNTLTSSNIDSDDESDISDDEDDDICQG 960

Query: 309 GASSNAGDDGESDGDVVGRSWF 330
           GASSNAGDDGESDGDVVGRSWF
Sbjct: 961 GASSNAGDDGESDGDVVGRSWF 982

BLAST of Cucsat.G9808.T19 vs. NCBI nr
Match: XP_038892243.1 (pentatricopeptide repeat-containing protein At5g04810, chloroplastic isoform X3 [Benincasa hispida])

HSP 1 Score: 607 bits (1564), Expect = 4.30e-213
Identity = 302/322 (93.79%), Postives = 312/322 (96.89%), Query Frame = 0

Query: 9   QMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYE 68
           +MEKA QILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAF+YFTKLRDEGL+LDVYTYE
Sbjct: 325 KMEKAVQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFSYFTKLRDEGLELDVYTYE 384

Query: 69  ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 128
           ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE
Sbjct: 385 ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 444

Query: 129 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKA 188
           GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKS GVKPNVKTYTTLI+GWARASLPEKA
Sbjct: 445 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSTGVKPNVKTYTTLIHGWARASLPEKA 504

Query: 189 LSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVCREMVDCELTVDMGTA 248
           LSCFEEMKLSGLKPD+AVYHCLMTSLLSRATVA GCIYPGILSVCREMVDC LTVDMGTA
Sbjct: 505 LSCFEEMKLSGLKPDKAVYHCLMTSLLSRATVAEGCIYPGILSVCREMVDCGLTVDMGTA 564

Query: 249 VHWSKCLLKIERTGGEITEALQKTFPPNWNVYNNTLTNSNIDSDDESDISDDEDDDICQE 308
           VHWSKCLLKIERTGGEITEALQKTFPPNWN+YNN LT+S++  DDESDISDDEDD+ICQ 
Sbjct: 565 VHWSKCLLKIERTGGEITEALQKTFPPNWNLYNNALTSSDVAPDDESDISDDEDDNICQG 624

Query: 309 GASSNAGDDGESDGDVVGRSWF 330
           G  SNAGDDGESDGDVVGRSWF
Sbjct: 625 GV-SNAGDDGESDGDVVGRSWF 645

BLAST of Cucsat.G9808.T19 vs. NCBI nr
Match: XP_038892242.1 (pentatricopeptide repeat-containing protein At5g04810, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 607 bits (1564), Expect = 6.45e-213
Identity = 302/322 (93.79%), Postives = 312/322 (96.89%), Query Frame = 0

Query: 9   QMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYE 68
           +MEKA QILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAF+YFTKLRDEGL+LDVYTYE
Sbjct: 337 KMEKAVQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFSYFTKLRDEGLELDVYTYE 396

Query: 69  ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 128
           ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE
Sbjct: 397 ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 456

Query: 129 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKA 188
           GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKS GVKPNVKTYTTLI+GWARASLPEKA
Sbjct: 457 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSTGVKPNVKTYTTLIHGWARASLPEKA 516

Query: 189 LSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVCREMVDCELTVDMGTA 248
           LSCFEEMKLSGLKPD+AVYHCLMTSLLSRATVA GCIYPGILSVCREMVDC LTVDMGTA
Sbjct: 517 LSCFEEMKLSGLKPDKAVYHCLMTSLLSRATVAEGCIYPGILSVCREMVDCGLTVDMGTA 576

Query: 249 VHWSKCLLKIERTGGEITEALQKTFPPNWNVYNNTLTNSNIDSDDESDISDDEDDDICQE 308
           VHWSKCLLKIERTGGEITEALQKTFPPNWN+YNN LT+S++  DDESDISDDEDD+ICQ 
Sbjct: 577 VHWSKCLLKIERTGGEITEALQKTFPPNWNLYNNALTSSDVAPDDESDISDDEDDNICQG 636

Query: 309 GASSNAGDDGESDGDVVGRSWF 330
           G  SNAGDDGESDGDVVGRSWF
Sbjct: 637 GV-SNAGDDGESDGDVVGRSWF 657

BLAST of Cucsat.G9808.T19 vs. ExPASy TrEMBL
Match: A0A0A0KTE3 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G613570 PE=3 SV=1)

HSP 1 Score: 644 bits (1662), Expect = 4.51e-224
Identity = 319/322 (99.07%), Postives = 321/322 (99.69%), Query Frame = 0

Query: 9   QMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYE 68
           +MEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAF YFTKLRDEGLQLDVYTYE
Sbjct: 622 KMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTYE 681

Query: 69  ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 128
           ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGD+WEAADLMQQMKRE
Sbjct: 682 ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDIWEAADLMQQMKRE 741

Query: 129 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKA 188
           GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKA
Sbjct: 742 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKA 801

Query: 189 LSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVCREMVDCELTVDMGTA 248
           LSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVCREMVDCELTVDMGTA
Sbjct: 802 LSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVCREMVDCELTVDMGTA 861

Query: 249 VHWSKCLLKIERTGGEITEALQKTFPPNWNVYNNTLTNSNIDSDDESDISDDEDDDICQE 308
           VHWSKCLLKIERTGGEITEALQKTFPPNWNVYNNTLTNSNIDSDDESDISDDEDDDICQE
Sbjct: 862 VHWSKCLLKIERTGGEITEALQKTFPPNWNVYNNTLTNSNIDSDDESDISDDEDDDICQE 921

Query: 309 GASSNAGDDGESDGDVVGRSWF 330
           GASSNAGDDGESDGDVVGRSWF
Sbjct: 922 GASSNAGDDGESDGDVVGRSWF 943

BLAST of Cucsat.G9808.T19 vs. ExPASy TrEMBL
Match: A0A5D3CFW5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001920 PE=3 SV=1)

HSP 1 Score: 632 bits (1629), Expect = 7.97e-219
Identity = 314/322 (97.52%), Postives = 319/322 (99.07%), Query Frame = 0

Query: 9   QMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYE 68
           +MEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGL LDVYTYE
Sbjct: 642 KMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLGLDVYTYE 701

Query: 69  ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 128
           ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE
Sbjct: 702 ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 761

Query: 129 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKA 188
           GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLI+GWARASLPEKA
Sbjct: 762 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLIHGWARASLPEKA 821

Query: 189 LSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVCREMVDCELTVDMGTA 248
           LSCFEEMKLSGLKPD+AVYHCLMTSLLSRATVA GCIYPGILSVCREMVDCELTVDMGTA
Sbjct: 822 LSCFEEMKLSGLKPDKAVYHCLMTSLLSRATVAQGCIYPGILSVCREMVDCELTVDMGTA 881

Query: 249 VHWSKCLLKIERTGGEITEALQKTFPPNWNVYNNTLTNSNIDSDDESDISDDEDDDICQE 308
           VHWSKCLLKIERTGGEITEALQKTFPPNWN+YNNTLT+SNIDSDDESDISDDEDDDICQ 
Sbjct: 882 VHWSKCLLKIERTGGEITEALQKTFPPNWNLYNNTLTSSNIDSDDESDISDDEDDDICQG 941

Query: 309 GASSNAGDDGESDGDVVGRSWF 330
           GASSNAGDDGESDGDVVGRSWF
Sbjct: 942 GASSNAGDDGESDGDVVGRSWF 963

BLAST of Cucsat.G9808.T19 vs. ExPASy TrEMBL
Match: A0A1S3BFB6 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489379 PE=3 SV=1)

HSP 1 Score: 632 bits (1629), Expect = 1.41e-218
Identity = 314/322 (97.52%), Postives = 319/322 (99.07%), Query Frame = 0

Query: 9   QMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYE 68
           +MEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGL LDVYTYE
Sbjct: 661 KMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLGLDVYTYE 720

Query: 69  ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 128
           ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE
Sbjct: 721 ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 780

Query: 129 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKA 188
           GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLI+GWARASLPEKA
Sbjct: 781 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLIHGWARASLPEKA 840

Query: 189 LSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVCREMVDCELTVDMGTA 248
           LSCFEEMKLSGLKPD+AVYHCLMTSLLSRATVA GCIYPGILSVCREMVDCELTVDMGTA
Sbjct: 841 LSCFEEMKLSGLKPDKAVYHCLMTSLLSRATVAQGCIYPGILSVCREMVDCELTVDMGTA 900

Query: 249 VHWSKCLLKIERTGGEITEALQKTFPPNWNVYNNTLTNSNIDSDDESDISDDEDDDICQE 308
           VHWSKCLLKIERTGGEITEALQKTFPPNWN+YNNTLT+SNIDSDDESDISDDEDDDICQ 
Sbjct: 901 VHWSKCLLKIERTGGEITEALQKTFPPNWNLYNNTLTSSNIDSDDESDISDDEDDDICQG 960

Query: 309 GASSNAGDDGESDGDVVGRSWF 330
           GASSNAGDDGESDGDVVGRSWF
Sbjct: 961 GASSNAGDDGESDGDVVGRSWF 982

BLAST of Cucsat.G9808.T19 vs. ExPASy TrEMBL
Match: A0A6J1DAE0 (pentatricopeptide repeat-containing protein At5g04810, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018664 PE=4 SV=1)

HSP 1 Score: 565 bits (1455), Expect = 1.93e-196
Identity = 286/323 (88.54%), Postives = 302/323 (93.50%), Query Frame = 0

Query: 9   QMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYE 68
           +MEKA +ILDEMTL+GVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLR EGL+LDVYTYE
Sbjct: 356 KMEKAVEILDEMTLSGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRSEGLELDVYTYE 415

Query: 69  ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 128
           ALLKACCKSGRMQSALAVTKEMSAQ IPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE
Sbjct: 416 ALLKACCKSGRMQSALAVTKEMSAQKIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 475

Query: 129 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKA 188
           GVQPDIHTYTSFINACSKAGDMQRATKTIEEM+SVGVKPNVKTYTTLI+GWARASLPE A
Sbjct: 476 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMRSVGVKPNVKTYTTLIHGWARASLPENA 535

Query: 189 LSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVA-HGCIYPGILSVCREMVDCELTVDMGT 248
           LSCFEEMKLSGLKPD+AVYHCLMTSLLSRATVA  G IYPGILSVCREMVD  LTVDMGT
Sbjct: 536 LSCFEEMKLSGLKPDKAVYHCLMTSLLSRATVAAEGSIYPGILSVCREMVDSGLTVDMGT 595

Query: 249 AVHWSKCLLKIERTGGEITEALQKTFPPNWNVYNNTLTNSNIDSDDESDISDDEDDDICQ 308
           AVHWSKCL KIERTGGEITEALQKTFPPNWN Y+N LT+S++D++DESD+SDD  DDIC 
Sbjct: 596 AVHWSKCLRKIERTGGEITEALQKTFPPNWNSYDNALTSSSVDAEDESDVSDD--DDICH 655

Query: 309 EGASSNAGDDGESDGDVVGRSWF 330
            G  SNA +D E+D DVVGRSWF
Sbjct: 656 GGV-SNADEDDENDDDVVGRSWF 675

BLAST of Cucsat.G9808.T19 vs. ExPASy TrEMBL
Match: A0A6J1D9Q6 (pentatricopeptide repeat-containing protein At5g04810, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018664 PE=4 SV=1)

HSP 1 Score: 565 bits (1455), Expect = 1.58e-192
Identity = 286/323 (88.54%), Postives = 302/323 (93.50%), Query Frame = 0

Query: 9   QMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYE 68
           +MEKA +ILDEMTL+GVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLR EGL+LDVYTYE
Sbjct: 650 KMEKAVEILDEMTLSGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRSEGLELDVYTYE 709

Query: 69  ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 128
           ALLKACCKSGRMQSALAVTKEMSAQ IPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE
Sbjct: 710 ALLKACCKSGRMQSALAVTKEMSAQKIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 769

Query: 129 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKA 188
           GVQPDIHTYTSFINACSKAGDMQRATKTIEEM+SVGVKPNVKTYTTLI+GWARASLPE A
Sbjct: 770 GVQPDIHTYTSFINACSKAGDMQRATKTIEEMRSVGVKPNVKTYTTLIHGWARASLPENA 829

Query: 189 LSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVA-HGCIYPGILSVCREMVDCELTVDMGT 248
           LSCFEEMKLSGLKPD+AVYHCLMTSLLSRATVA  G IYPGILSVCREMVD  LTVDMGT
Sbjct: 830 LSCFEEMKLSGLKPDKAVYHCLMTSLLSRATVAAEGSIYPGILSVCREMVDSGLTVDMGT 889

Query: 249 AVHWSKCLLKIERTGGEITEALQKTFPPNWNVYNNTLTNSNIDSDDESDISDDEDDDICQ 308
           AVHWSKCL KIERTGGEITEALQKTFPPNWN Y+N LT+S++D++DESD+SDD  DDIC 
Sbjct: 890 AVHWSKCLRKIERTGGEITEALQKTFPPNWNSYDNALTSSSVDAEDESDVSDD--DDICH 949

Query: 309 EGASSNAGDDGESDGDVVGRSWF 330
            G  SNA +D E+D DVVGRSWF
Sbjct: 950 GGV-SNADEDDENDDDVVGRSWF 969

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q0WMY51.3e-12972.15Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidop... [more]
Q9FIX31.8e-3034.15Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX... [more]
Q9FMQ16.7e-3031.86Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidop... [more]
Q76C998.8e-3034.70Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV... [more]
Q84ZD22.0e-2930.59Pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic OS=Oryza... [more]
Match NameE-valueIdentityDescription
XP_004135367.21.66e-22399.07pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Cucumis sa... [more]
KAA0034647.11.65e-21897.52pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK09199... [more]
XP_008446749.12.91e-21897.52PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g... [more]
XP_038892243.14.30e-21393.79pentatricopeptide repeat-containing protein At5g04810, chloroplastic isoform X3 ... [more]
XP_038892242.16.45e-21393.79pentatricopeptide repeat-containing protein At5g04810, chloroplastic isoform X2 ... [more]
Match NameE-valueIdentityDescription
A0A0A0KTE34.51e-22499.07RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G613570 PE=3 SV... [more]
A0A5D3CFW57.97e-21997.52Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3BFB61.41e-21897.52LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g04810, chlo... [more]
A0A6J1DAE01.93e-19688.54pentatricopeptide repeat-containing protein At5g04810, chloroplastic isoform X2 ... [more]
A0A6J1D9Q61.58e-19288.54pentatricopeptide repeat-containing protein At5g04810, chloroplastic isoform X1 ... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 7..77
e-value: 2.4E-20
score: 74.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 78..271
e-value: 3.3E-46
score: 160.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 65..98
e-value: 1.7E-6
score: 25.8
coord: 30..64
e-value: 1.6E-6
score: 25.9
coord: 171..203
e-value: 2.7E-9
score: 34.6
coord: 135..169
e-value: 4.7E-8
score: 30.7
coord: 101..134
e-value: 1.7E-7
score: 28.9
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 121..177
e-value: 2.8E-16
score: 59.4
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 27..76
e-value: 1.1E-11
score: 44.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 63..97
score: 11.23539
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 168..202
score: 12.386327
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 133..167
score: 12.41921
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 98..132
score: 12.649398
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 28..62
score: 10.237912
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..307
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 284..330
NoneNo IPR availablePANTHERPTHR47939MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKEcoord: 9..304
NoneNo IPR availablePANTHERPTHR47939:SF1OS04G0684500 PROTEINcoord: 9..304

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G9808Cucsat.G9808gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G9808.T19.E1Cucsat.G9808.T19.E1exon
Cucsat.G9808.T19.E2Cucsat.G9808.T19.E2exon
Cucsat.G9808.T19.E3Cucsat.G9808.T19.E3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G9808.T19.C1Cucsat.G9808.T19.C1CDS
Cucsat.G9808.T19.C2Cucsat.G9808.T19.C2CDS
Cucsat.G9808.T19.C3Cucsat.G9808.T19.C3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G9808.T19Cucsat.G9808.T19-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding