Cucsat.G9025.T12 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G9025.T12
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptiontranscription factor PIF4-like
Locationctg1635: 1126689 .. 1131125 (+)
RNA-Seq ExpressionCucsat.G9025.T12
SyntenyCucsat.G9025.T12
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGTTTTAAATGCTTTTTGGTCCATTGCTCATTTCCTCCTCCATTGCATTTGCTCTGGAGTTTGAGTTTTTCTTTTTTGCTCATTTACAAAGAGAAAGAAACAGATTTTAAGTAAAGGGTCACTTCAATTTCCAGCTGAAATTTGGGATTTCTTCAGGTTTTTGTTTCTTTTCGTCATGTTTTTTTTTTTTTTTTTTGTTTATGGCTATTGGGTTTTTTCTCCTTTTTGCTTCCCCTCCCTTTTTTAGGGGTTCTTTCTTCTTTCCTTCTTTTTTCTGCTTGGTGTTTCCATTGAAACCCCTTTTTTGTGTCTTTTATCTATTTTAAAGTCGTTGTGAATTGTGGTGATAATATAAAATAATGGATTTGGTTCTTGGGGAAGAAAAGTTTCTGTTTCGGTTTCTGTATGTGTTTTTACCCAATTTAGACAGACAGCTTTTGCCCCTTTTTTTGAAAATTTTGTTTTGTTTTTCAACCTCTCTGAATCCTCTGTTTCGTGTTCTGAATTCTTCAAGATTCTGTTTCCTCTTCTCTATTTGAAAGGGTTGATATGGTTATGGTGTTTTCTAATGATTTGTTTGGTTTAGAGAGTCAATTGTGTAAATTATTTAATTAAAAGTGTCATTAAATACTACTTTATTTGGACTTTCTTCTCACTCTTTTGCTTAATTTCATGGGTTTTAATAAATGGGGACAGCAAATCTCTTTATTAATTATTTTATTTCTTTTCTTGGTCAATTGCTAACCTAGATTTTGTAGTTTTTTTTGAATAATAATTTGTGGGGATTTCTTGTTTTCTACTTTTCAAGCCTCAAAGTATGGATTAAAGCTTGGTGTTGTTGTAACAGAACAAGAATATTTTCCTAATTTGTGATTTTTAGGGTTATTTTCTTTATCTTATTTATTGTTTCATTTTGACAGAGATTCTGTGTCAAAGCAGCCATGAATTATTGCTTTCCTGATTGGAATTTTGAGGGTGACATTCCCCCAGCTAAGAAATCAATGGGGTTGGCTCTCTTTTTCTCTCCCTCTTTTTTGCATTCTCTTTCTCTATCTAGTTGTTTCAAATTTCTAAGAGAGGGGGAAAATATTGGTATACTCTTGAGCTTGGTATTTTGTGTATTTTTCTTTAAGCTTGGATGGGGATTTTGCAGACCTGAACATGATGATCTTGTGGAACTTTTATGGAGAAATGGTCAAGTGGTCTTACAAAGCCAAAAAGCTAGAAAATCAAGTTTAATTGCTAATGAAGTAAGGCAATTTCAAAAACAGAATCAACCACTTTACAGGAGTAATGTGTCTTGTGGAAATTCAAGCAATTTGATTCAAGATGATGAGACAGTCTCTTGGATACAAGATCCGCTTGATGATTCGTTCGAGAAGGAATTTTGTTCCAATTTCTTCTCCGAATTACCACCTGCTGATCCTATTGAGATTGTTAAGCAGCCTATCAAACATTTCCAAGATGACAAGCAAACAAAGATTTGGTGCCTTTGATACTGCTACTCATGTTACTTTTGGGAATTTTGTGAAGAAAAACTCGAAGCCGCCTGCATCTCTTGCAGAGTTCCCTATGAACACTATGCCTCCTCCGAGATTTCAGTTTCAAGATTCGTCACGGCAGAACAAGGATTTAGGAGATTTAGGAAAATTGGTGAATTTTTCTCAAGTTCCTGTGCCTCCCTTGAAGGGTGACCTGGGATCATCAAATGGGGGGAGAGAGTCTGGAAACTTGATACAGGGAGAGGGAAGAGATTGTTCGGGAATGACAGTTGGTTCGAGCCATTGTGGTAGCAATCAAGTTCCTAATCCAAATGACCTGGATTTGAGCCGAGTTTCAACAAGTGGTTTTGGAAATGCTGGTTTATCTGCTGGTTTCTCCAAGGAAGATAATAGAAAGATGGTTGCACAAGGTGAGAGGGACAAAACTGAGACCATGGATCCAACTGCCACTTCATCCTCAGGCGGTTCGGGAAGTAGTATGGACAGAAGTAGAACAATTGGACAATCTACTGGAGGTAACGGCAACAAAAGAAAAGGCCGAGACGGAGAAGAATCCGAGTGCCAAAGTGAGGTAAAATTATCAAGCATTCTTTTTTTCTATTGCTAGGCTCATTAGTTATACTTTTTAGACGTGAACACAACTTAACATTTTCTGTAGACTGCTGAACTCGAATCTGCTGAGGGAAACAAGACAGCTCCACGATCTGGATCTTCTCGCAGGACCCGTGCTGCTGAAGTGCATAACCTTTCAGAAAGGGTAGGATATTAAAAGTTCCCCATTTGTCAATCTTTTTCCTATACTGAATCCTATGTTAAAAGCTTGCTTGTAATGCAGAGGAGAAGAGAAAGGATAAATGAAAAGATGAAAGCACTGCAAGAACTCATTCCACACTGTAATAAGGTATTTGCATACCACATCTAGTCTTCCATTTTTTAATTCTTTATTATTTCTTGATGATTAAATTTTGCTACAACGTTATTAGCGATAATAGAAAAGTCTAACTAGAACTTTTCGGATTTATCCTTAGTAATAGTTGTTGGATCTAATCGAGAAAGAACGTGTAAAGGATTTTTTCCTTTTCTTTTTACTTGTCATAAATTTATATATGTCAACTTCAAGCTGGAACTAACAATGATTGAAACAAATTCATTCAACTTGCGTGACTTCAAAATTTTCAGTCTACCTGAATCTTGTACTCTTTAGTAATTAGTCCTTTTGTCACAGACTGACAAAGCTTCAATGCTAGATGAAGCTATTGAATATTTGAAGTCACTTCAATTACAACTACAGGTATGAGTTTAACCAAGAATTCCACAAAATCTACTGATCTTTCTACATACAATACAAGCCACAAATTTCTTTTGTAATTGCTTAATGTTCAATAGGTAATGTGGATGGGAAGTGGGATGGCGCCCATGATGTTTCCCGGCGTTCAACATTACATGTCTCGAGTGGCTATGGGCATGGGTATGGCCCAACCTTCAATGCCTTCAATTCACAACCCAATGCAATTACCTCGGGTCCCGATTGTCGATCAATCAGTTTCAGTGGCTCCAACACCAAACCAACCTATGATGTGCCAACCGCAAATGTTCAACCCGATGAATTATCAAAATCAGATGCAGAATCCCGCTTTGCAAGAGCAGTATGCTCGTCTAATGGGATTCCATCATATGCAACCTACCTCACAGGTTAGAAATCAGATTGTGTTTGGAGTTTTTCCTTTGGATGTTTTCTTGTAAAAAAAGCCTACTAACAATTCTGACTAATTCTATCTTGTTTTGTTCTTCAGCCCATAAATGTGTTCAGATTTTGTCCCTCAGCAGTCTTGCAGAGTCAACCTGCAGCAGCACCTGGCCCTGCTAGTGGTCCTACTGCTGGAGGATCTATAACCAATGATATTGTAAATGGAAATTTGGGTAAGTCTTGTGGATCTTTCTTATTGTATCATTAACAAGTGATTAATATTAATCTGACTTGGATACGACTTCTTTTATAGTAATCAATGATGTTTATATGTGTCGGTAGTAAAATAATTTAGTTATTGTCCAAATCTAACATCTTCGCAAGAGTGCCTGTCCCTTGTTTGGGGCATAAGGGGGGAGAGAGAGTAAGTGGATGAATCATGTTGAAAGTTTGAGAACCTTTTTTTGCTGATTCTACCAATCTTGGACATAATGAGTGGTTACAAGAAATAACTGAGTTCATATGATGCCTTATCTTCTCAAATAGGCACCTACCTTTTTCTCTCTCCAAAAGGGTACCAAGTCATCTAAATCTTTACCCTTCAAAAATTTTCGCATAGTTGTCGGCCAATTTGTTCCTTCCCTACTAGTGGCTCTCTTTACAAGTCGTAGTTTCGAGTGTAAATGCACGGTGGCCAAATTGAAAGACAAATACCCTATGGAATTAAAACTGCATTCCCTCTTTTTGAATCTGATACCGCAAGTGTGTCTCTCGGTCACGTAGCTGTCGTTGACAGTCTTTTTCTTTTGCTGATGTTAACAGGTTGACAAGTGAAATTATCCATGTTTATCAGTTAGCTAAGGTTCCTTCTCGGTTTATTGCGAAGCATCATTCCTCGATATGGTGGAAACCATGATTGTTGGTTCTTTGTGTATATCTGATACAGATTCTTGCCTCCTTGCCCTCCAAGTACACAGCTTATATGCTTTCCAACTTCATTACCATATTACATAATAGTAATGGAAGAAGCTTCATTAATCTGTATATTGTTGAGACAGCTAAAAACTCAAGATTCAAATCTTGCAATTCAAGGTATTTAACAAAAAAATTTTGTCAAAGAACGCTTTACGAAATAAGATCAACTAGTTTGTTTCTGTCCAGCTTAAGCTCATTTGTATGTACTATCTCTTAAACTGTCAATGAATTGAAAATAAGTTGATTTTGATATTATCCTGCTGCTGTTTAC

Coding sequence (CDS)

ATGATGAGACAGTCTCTTGGATACAAGATCCGCTTGATGATTCGTTCGAGAAGGAATTTTGTTCCAATTTCTTCTCCGAATTACCACCTGCTGATCCTATTGAGATTGTTAAGCAGCCTATCAAACATTTCCAAGATGACAAGCAAACAAAGATTTGGTGCCTTTGATACTGCTACTCATGTTACTTTTGGGAATTTTGTGAAGAAAAACTCGAAGCCGCCTGCATCTCTTGCAGAGTTCCCTATGAACACTATGCCTCCTCCGAGATTTCAGTTTCAAGATTCGTCACGGCAGAACAAGGATTTAGGAGATTTAGGAAAATTGGTGAATTTTTCTCAAGTTCCTGTGCCTCCCTTGAAGGGTGACCTGGGATCATCAAATGGGGGGAGAGAGTCTGGAAACTTGATACAGGGAGAGGGAAGAGATTGTTCGGGAATGACAGTTGGTTCGAGCCATTGTGGTAGCAATCAAGTTCCTAATCCAAATGACCTGGATTTGAGCCGAGTTTCAACAAGTGGTTTTGGAAATGCTGGTTTATCTGCTGGTTTCTCCAAGGAAGATAATAGAAAGATGGTTGCACAAGGTGAGAGGGACAAAACTGAGACCATGGATCCAACTGCCACTTCATCCTCAGGCGGTTCGGGAAGTAGTATGGACAGAAGTAGAACAATTGGACAATCTACTGGAGGTAACGGCAACAAAAGAAAAGGCCGAGACGGAGAAGAATCCGAGTGCCAAAGTGAGACTGCTGAACTCGAATCTGCTGAGGGAAACAAGACAGCTCCACGATCTGGATCTTCTCGCAGGACCCGTGCTGCTGAAGTGCATAACCTTTCAGAAAGGAGGAGAAGAGAAAGGATAAATGAAAAGATGAAAGCACTGCAAGAACTCATTCCACACTGTAATAAGGTATTTGCATACCACATCTAG

Protein sequence

MMRQSLGYKIRLMIRSRRNFVPISSPNYHLLILLRLLSSLSNISKMTSKQRFGAFDTATHVTFGNFVKKNSKPPASLAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVNFSQVPVPPLKGDLGSSNGGRESGNLIQGEGRDCSGMTVGSSHCGSNQVPNPNDLDLSRVSTSGFGNAGLSAGFSKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGGNGNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEKMKALQELIPHCNKVFAYHI
Homology
[Close]
BLAST of Cucsat.G9025.T12 vs. ExPASy Swiss-Prot
Match: Q10CH5 (Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 OS=Oryza sativa subsp. japonica OX=39947 GN=PIL13 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.9e-18
Identity = 64/106 (60.38%), Postives = 78/106 (73.58%), Query Frame = 0 

Query: 199 KTETMDPTATSSSGGSGSSMDRSRTIGQSTGGNGNKRKGRDGEESECQSETAELESAEGN 258
           ++ T D   TSSSGGSGS+   S    +S   + +KRKGR  E+S+ +SE AE E+ E  
Sbjct: 151 RSSTHDGAGTSSSGGSGSNFGASGLPSES--ASAHKRKGR--EDSDSRSEDAECEATEET 210

Query: 259 KTAPRS-GSSRRTRAAEVHNLSERRRRERINEKMKALQELIPHCNK 304
           K++ R  GS RRTRAAEVHNLSERRRR+RINEKM+ALQELIPHCNK
Sbjct: 211 KSSSRRYGSKRRTRAAEVHNLSERRRRDRINEKMRALQELIPHCNK 252

[Close]
BLAST of Cucsat.G9025.T12 vs. ExPASy Swiss-Prot
Match: Q8W2F3 (Transcription factor PIF4 OS=Arabidopsis thaliana OX=3702 GN=PIF4 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.5e-18
Identity = 84/195 (43.08%), Postives = 104/195 (53.33%), Query Frame = 0 

Query: 113 QVPVPPLKGDLGSSNGGRESGNLIQGEGRDCSGMTVGSSHCGSNQVPNPNDLDLSRVSTS 172
           QV  PP      SS+G RE+      E    S  TVG SHCGSN  P+ NDLD+S     
Sbjct: 132 QVMPPPKFRLTNSSSGIRET------EMEQYSVTTVGPSHCGSN--PSQNDLDVS----- 191

Query: 173 GFGNAGLSAGFSKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG-- 232
                             M     ++  E ++P A+SSSGGS S     + I +   G  
Sbjct: 192 ------------------MSHDRSKNIEEKLNPNASSSSGGS-SGCSFGKDIKEMASGRC 251

Query: 233 --NGNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERIN 292
                KRK  +  +     E+  L  A GNK+  RSGS+RR+RAAEVHNLSERRRR+RIN
Sbjct: 252 ITTDRKRKRINHTD-----ESVSLSDAIGNKSNQRSGSNRRSRAAEVHNLSERRRRDRIN 289

Query: 293 EKMKALQELIPHCNK 304
           E+MKALQELIPHC+K
Sbjct: 312 ERMKALQELIPHCSK 289

[Close]
BLAST of Cucsat.G9025.T12 vs. ExPASy Swiss-Prot
Match: Q84LH8 (Transcription factor PIF5 OS=Arabidopsis thaliana OX=3702 GN=PIF5 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.5e-15
Identity = 75/167 (44.91%), Postives = 94/167 (56.29%), Query Frame = 0 

Query: 144 SGMTVGSSHCGSNQVPNPNDLDLSRVSTSGFGNAGLSAGFSKEDNRKMVAQGERDKTETM 203
           S +TVG SHCGSNQ  N +      VS S              D  K V        E +
Sbjct: 146 SVITVGPSHCGSNQSTNIHQATTLPVSMS--------------DRSKNV-------EERL 205

Query: 204 DPTATSSSGGSGSSMDRS--RTIGQSTGGNGNKRKG--RDGEESECQSE---TAELESAE 263
           D   TSS G SG S  R+   T+  ++     KRK      +ES  QS+   T+  +   
Sbjct: 206 D---TSSGGSSGCSYGRNNKETVSGTSVTIDRKRKHVMDADQESVSQSDIGLTSTDDQTM 265

Query: 264 GNKTAPRSGSSRRTRAAEVHNLSERRRRERINEKMKALQELIPHCNK 304
           GNK++ RSGS+RR+RAAEVHNLSERRRR+RINE+MKALQELIPHC++
Sbjct: 266 GNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSR 288

[Close]
BLAST of Cucsat.G9025.T12 vs. ExPASy Swiss-Prot
Match: O80536 (Transcription factor PIF3 OS=Arabidopsis thaliana OX=3702 GN=PIF3 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.7e-12
Identity = 60/130 (46.15%), Postives = 84/130 (64.62%), Query Frame = 0 

Query: 181 AGFSKEDNRK--MVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGGN-GNKRKG 240
           A  + +DN+K  ++++    K +  +     SS GSG+S+D     G S   +   KRK 
Sbjct: 252 ASATPKDNQKACLISEDSCRKDQESEKAVVCSSVGSGNSLD-----GPSESPSLSLKRKH 311

Query: 241 RDGEESECQSETAELESAEGNKTA--PRSG-SSRRTRAAEVHNLSERRRRERINEKMKAL 300
            + ++ +C SE  E ES +G K A   R+G  S+R+R+AEVHNLSERRRR+RINEKM+AL
Sbjct: 312 SNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRAL 371

Query: 301 QELIPHCNKV 305
           QELIP+CNKV
Sbjct: 372 QELIPNCNKV 376

[Close]
BLAST of Cucsat.G9025.T12 vs. ExPASy Swiss-Prot
Match: Q8GZM7 (Transcription factor PIF1 OS=Arabidopsis thaliana OX=3702 GN=PIF1 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-09
Identity = 70/211 (33.18%), Postives = 106/211 (50.24%), Query Frame = 0 

Query: 96  SRQNKDLGDLGKLVNFSQVPVPPLKGDLGSSNGGRESGNLIQGEGRDCSGMTVGSSHCGS 155
           S  N+    +   +NFS+     L+GD  +  GG ESG L+         +   S+    
Sbjct: 133 SSTNESRPPVRNFMNFSR-----LRGDFNNGRGG-ESGPLLS------KAVVRESTQVSP 192

Query: 156 NQVPN--PNDLDLSRVSTSGFGNAGLSAGFSKEDNRKMVAQGERDKTETMDPTATSSSGG 215
           +  P+   ++  L+R  T G  ++ ++ G          A   + K   M   A   +G 
Sbjct: 193 SATPSAAASESGLTR-RTDGTDSSAVAGG---------GAYNRKGKAVAMTAPAIEITGT 252

Query: 216 SGSSMDRSRTIGQSTGGNGNKRKGRDGEES-ECQSETAELESAEGNKTAPRSGSSRRTRA 275
           S S + +S    + T  +  KRK R+   + E +S + E + A  + T     S++R+RA
Sbjct: 253 SSSVVSKSEIEPEKTNVDDRKRKEREATTTDETESRSEETKQARVSTT-----STKRSRA 312

Query: 276 AEVHNLSERRRRERINEKMKALQELIPHCNK 304
           AEVHNLSER+RR+RINE+MKALQELIP CNK
Sbjct: 313 AEVHNLSERKRRDRINERMKALQELIPRCNK 316

[Close]
BLAST of Cucsat.G9025.T12 vs. NCBI nr
Match: XP_011653988.1 (transcription factor PIF5 [Cucumis sativus] >XP_011653989.1 transcription factor PIF5 [Cucumis sativus] >KGN54953.1 hypothetical protein Csa_012072 [Cucumis sativus])

HSP 1 Score: 488 bits (1257), Expect = 2.94e-168
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0 

Query: 51  RFGAFDTATHVTFGNFVKKNSKPPASLAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN 110
           RFGAFDTATHVTFGNFVKKNSKPPASLAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN
Sbjct: 131 RFGAFDTATHVTFGNFVKKNSKPPASLAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN 190

Query: 111 FSQVPVPPLKGDLGSSNGGRESGNLIQGEGRDCSGMTVGSSHCGSNQVPNPNDLDLSRVS 170
           FSQVPVPPLKGDLGSSNGGRESGNLIQGEGRDCSGMTVGSSHCGSNQVPNPNDLDLSRVS
Sbjct: 191 FSQVPVPPLKGDLGSSNGGRESGNLIQGEGRDCSGMTVGSSHCGSNQVPNPNDLDLSRVS 250

Query: 171 TSGFGNAGLSAGFSKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG 230
           TSGFGNAGLSAGFSKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG
Sbjct: 251 TSGFGNAGLSAGFSKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG 310

Query: 231 NGNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK 290
           NGNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK
Sbjct: 311 NGNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK 370

Query: 291 MKALQELIPHCNK 303
           MKALQELIPHCNK
Sbjct: 371 MKALQELIPHCNK 383

[Close]
BLAST of Cucsat.G9025.T12 vs. NCBI nr
Match: XP_008464685.1 (PREDICTED: transcription factor PIF4-like [Cucumis melo] >XP_008464686.1 PREDICTED: transcription factor PIF4-like [Cucumis melo] >XP_008464687.1 PREDICTED: transcription factor PIF4-like [Cucumis melo])

HSP 1 Score: 467 bits (1202), Expect = 6.41e-160
Identity = 242/253 (95.65%), Postives = 247/253 (97.63%), Query Frame = 0 

Query: 51  RFGAFDTATHVTFGNFVKKNSKPPASLAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN 110
           RFGAFDT+THVTFGN VKK+SKPPA+LAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN
Sbjct: 131 RFGAFDTSTHVTFGNSVKKSSKPPAALAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN 190

Query: 111 FSQVPVPPLKGDLGSSNGGRESGNLIQGEGRDCSGMTVGSSHCGSNQVPNPNDLDLSRVS 170
           FSQVP PPLKGDLGSSNGG+ESGNLIQGEGRDCS MTVGSSHCGSNQVPNPNDLDLSRVS
Sbjct: 191 FSQVPAPPLKGDLGSSNGGKESGNLIQGEGRDCSAMTVGSSHCGSNQVPNPNDLDLSRVS 250

Query: 171 TSGFGNAGLSAGFSKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG 230
           TSGF NAGLSAG SKEDNRK+VAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG
Sbjct: 251 TSGFRNAGLSAGLSKEDNRKLVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG 310

Query: 231 NGNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK 290
           N NKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK
Sbjct: 311 NSNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK 370

Query: 291 MKALQELIPHCNK 303
           MKALQELIPHCNK
Sbjct: 371 MKALQELIPHCNK 383

[Close]
BLAST of Cucsat.G9025.T12 vs. NCBI nr
Match: KAA0032908.1 (transcription factor PIF4-like [Cucumis melo var. makuwa] >TYK28090.1 transcription factor PIF4-like [Cucumis melo var. makuwa])

HSP 1 Score: 467 bits (1202), Expect = 5.88e-159
Identity = 242/253 (95.65%), Postives = 247/253 (97.63%), Query Frame = 0 

Query: 51  RFGAFDTATHVTFGNFVKKNSKPPASLAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN 110
           RFGAFDT+THVTFGN VKK+SKPPA+LAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN
Sbjct: 153 RFGAFDTSTHVTFGNSVKKSSKPPAALAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN 212

Query: 111 FSQVPVPPLKGDLGSSNGGRESGNLIQGEGRDCSGMTVGSSHCGSNQVPNPNDLDLSRVS 170
           FSQVP PPLKGDLGSSNGG+ESGNLIQGEGRDCS MTVGSSHCGSNQVPNPNDLDLSRVS
Sbjct: 213 FSQVPAPPLKGDLGSSNGGKESGNLIQGEGRDCSAMTVGSSHCGSNQVPNPNDLDLSRVS 272

Query: 171 TSGFGNAGLSAGFSKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG 230
           TSGF NAGLSAG SKEDNRK+VAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG
Sbjct: 273 TSGFRNAGLSAGLSKEDNRKLVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG 332

Query: 231 NGNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK 290
           N NKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK
Sbjct: 333 NSNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK 392

Query: 291 MKALQELIPHCNK 303
           MKALQELIPHCNK
Sbjct: 393 MKALQELIPHCNK 405

[Close]
BLAST of Cucsat.G9025.T12 vs. NCBI nr
Match: XP_038897580.1 (transcription factor PIF4-like isoform X2 [Benincasa hispida] >XP_038897581.1 transcription factor PIF4-like isoform X2 [Benincasa hispida])

HSP 1 Score: 447 bits (1151), Expect = 3.41e-152
Identity = 239/253 (94.47%), Postives = 241/253 (95.26%), Query Frame = 0 

Query: 51  RFGAFDTATHVTFGNFVKKNSKPPASLAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN 110
           RFGAFDTATHVTFGN VKKNS P A+LAEFPMNTMPPPRFQF DS RQ KDLGDLGKLVN
Sbjct: 133 RFGAFDTATHVTFGNSVKKNSTP-AALAEFPMNTMPPPRFQFPDSVRQTKDLGDLGKLVN 192

Query: 111 FSQVPVPPLKGDLGSSNGGRESGNLIQGEGRDCSGMTVGSSHCGSNQVPNPNDLDLSRVS 170
           FSQVPVP +KGDLGSSN GRESGNLIQGEGRDCS MTVGSSHCGSNQVPNPNDLDLSRVS
Sbjct: 193 FSQVPVP-VKGDLGSSNRGRESGNLIQGEGRDCSAMTVGSSHCGSNQVPNPNDLDLSRVS 252

Query: 171 TSGFGNAGLSAGFSKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG 230
           TSGFGNAGLSAG SKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG
Sbjct: 253 TSGFGNAGLSAGLSKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG 312

Query: 231 NGNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK 290
           N NKRKGRDGEESECQSETAELESAEGNK APRSGSSRRTRAAEVHNLSERRRRERINEK
Sbjct: 313 NSNKRKGRDGEESECQSETAELESAEGNKAAPRSGSSRRTRAAEVHNLSERRRRERINEK 372

Query: 291 MKALQELIPHCNK 303
           MKALQELIPHCNK
Sbjct: 373 MKALQELIPHCNK 383

[Close]
BLAST of Cucsat.G9025.T12 vs. NCBI nr
Match: XP_038897579.1 (transcription factor PIF4-like isoform X1 [Benincasa hispida])

HSP 1 Score: 447 bits (1151), Expect = 6.48e-152
Identity = 239/253 (94.47%), Postives = 241/253 (95.26%), Query Frame = 0 

Query: 51  RFGAFDTATHVTFGNFVKKNSKPPASLAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN 110
           RFGAFDTATHVTFGN VKKNS P A+LAEFPMNTMPPPRFQF DS RQ KDLGDLGKLVN
Sbjct: 153 RFGAFDTATHVTFGNSVKKNSTP-AALAEFPMNTMPPPRFQFPDSVRQTKDLGDLGKLVN 212

Query: 111 FSQVPVPPLKGDLGSSNGGRESGNLIQGEGRDCSGMTVGSSHCGSNQVPNPNDLDLSRVS 170
           FSQVPVP +KGDLGSSN GRESGNLIQGEGRDCS MTVGSSHCGSNQVPNPNDLDLSRVS
Sbjct: 213 FSQVPVP-VKGDLGSSNRGRESGNLIQGEGRDCSAMTVGSSHCGSNQVPNPNDLDLSRVS 272

Query: 171 TSGFGNAGLSAGFSKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG 230
           TSGFGNAGLSAG SKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG
Sbjct: 273 TSGFGNAGLSAGLSKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG 332

Query: 231 NGNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK 290
           N NKRKGRDGEESECQSETAELESAEGNK APRSGSSRRTRAAEVHNLSERRRRERINEK
Sbjct: 333 NSNKRKGRDGEESECQSETAELESAEGNKAAPRSGSSRRTRAAEVHNLSERRRRERINEK 392

Query: 291 MKALQELIPHCNK 303
           MKALQELIPHCNK
Sbjct: 393 MKALQELIPHCNK 403

[Close]
BLAST of Cucsat.G9025.T12 vs. ExPASy TrEMBL
Match: A0A0A0KZR2 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G615240 PE=4 SV=1)

HSP 1 Score: 488 bits (1257), Expect = 1.42e-168
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0 

Query: 51  RFGAFDTATHVTFGNFVKKNSKPPASLAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN 110
           RFGAFDTATHVTFGNFVKKNSKPPASLAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN
Sbjct: 131 RFGAFDTATHVTFGNFVKKNSKPPASLAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN 190

Query: 111 FSQVPVPPLKGDLGSSNGGRESGNLIQGEGRDCSGMTVGSSHCGSNQVPNPNDLDLSRVS 170
           FSQVPVPPLKGDLGSSNGGRESGNLIQGEGRDCSGMTVGSSHCGSNQVPNPNDLDLSRVS
Sbjct: 191 FSQVPVPPLKGDLGSSNGGRESGNLIQGEGRDCSGMTVGSSHCGSNQVPNPNDLDLSRVS 250

Query: 171 TSGFGNAGLSAGFSKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG 230
           TSGFGNAGLSAGFSKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG
Sbjct: 251 TSGFGNAGLSAGFSKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG 310

Query: 231 NGNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK 290
           NGNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK
Sbjct: 311 NGNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK 370

Query: 291 MKALQELIPHCNK 303
           MKALQELIPHCNK
Sbjct: 371 MKALQELIPHCNK 383

[Close]
BLAST of Cucsat.G9025.T12 vs. ExPASy TrEMBL
Match: A0A1S3CMJ5 (transcription factor PIF4-like OS=Cucumis melo OX=3656 GN=LOC103502508 PE=4 SV=1)

HSP 1 Score: 467 bits (1202), Expect = 3.10e-160
Identity = 242/253 (95.65%), Postives = 247/253 (97.63%), Query Frame = 0 

Query: 51  RFGAFDTATHVTFGNFVKKNSKPPASLAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN 110
           RFGAFDT+THVTFGN VKK+SKPPA+LAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN
Sbjct: 131 RFGAFDTSTHVTFGNSVKKSSKPPAALAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN 190

Query: 111 FSQVPVPPLKGDLGSSNGGRESGNLIQGEGRDCSGMTVGSSHCGSNQVPNPNDLDLSRVS 170
           FSQVP PPLKGDLGSSNGG+ESGNLIQGEGRDCS MTVGSSHCGSNQVPNPNDLDLSRVS
Sbjct: 191 FSQVPAPPLKGDLGSSNGGKESGNLIQGEGRDCSAMTVGSSHCGSNQVPNPNDLDLSRVS 250

Query: 171 TSGFGNAGLSAGFSKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG 230
           TSGF NAGLSAG SKEDNRK+VAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG
Sbjct: 251 TSGFRNAGLSAGLSKEDNRKLVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG 310

Query: 231 NGNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK 290
           N NKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK
Sbjct: 311 NSNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK 370

Query: 291 MKALQELIPHCNK 303
           MKALQELIPHCNK
Sbjct: 371 MKALQELIPHCNK 383

[Close]
BLAST of Cucsat.G9025.T12 vs. ExPASy TrEMBL
Match: A0A5D3DXW5 (Transcription factor PIF4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003560 PE=4 SV=1)

HSP 1 Score: 467 bits (1202), Expect = 2.85e-159
Identity = 242/253 (95.65%), Postives = 247/253 (97.63%), Query Frame = 0 

Query: 51  RFGAFDTATHVTFGNFVKKNSKPPASLAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN 110
           RFGAFDT+THVTFGN VKK+SKPPA+LAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN
Sbjct: 153 RFGAFDTSTHVTFGNSVKKSSKPPAALAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN 212

Query: 111 FSQVPVPPLKGDLGSSNGGRESGNLIQGEGRDCSGMTVGSSHCGSNQVPNPNDLDLSRVS 170
           FSQVP PPLKGDLGSSNGG+ESGNLIQGEGRDCS MTVGSSHCGSNQVPNPNDLDLSRVS
Sbjct: 213 FSQVPAPPLKGDLGSSNGGKESGNLIQGEGRDCSAMTVGSSHCGSNQVPNPNDLDLSRVS 272

Query: 171 TSGFGNAGLSAGFSKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG 230
           TSGF NAGLSAG SKEDNRK+VAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG
Sbjct: 273 TSGFRNAGLSAGLSKEDNRKLVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG 332

Query: 231 NGNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK 290
           N NKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK
Sbjct: 333 NSNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK 392

Query: 291 MKALQELIPHCNK 303
           MKALQELIPHCNK
Sbjct: 393 MKALQELIPHCNK 405

[Close]
BLAST of Cucsat.G9025.T12 vs. ExPASy TrEMBL
Match: A0A6J1CKT0 (transcription factor PIF4-like OS=Momordica charantia OX=3673 GN=LOC111012049 PE=4 SV=1)

HSP 1 Score: 413 bits (1062), Expect = 5.50e-139
Identity = 221/254 (87.01%), Postives = 231/254 (90.94%), Query Frame = 0 

Query: 51  RFGAFDTATHVTFGNFVKKNSK-PPASLAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLV 110
           RFGAFD  THV+FGN  + +SK P A+LAEFP NTMPPPRFQ  +S++Q KD GDLGK+V
Sbjct: 133 RFGAFDNTTHVSFGNSQRPSSKHPAAALAEFPTNTMPPPRFQLPNSTQQTKDFGDLGKIV 192

Query: 111 NFSQVPVPPLKGDLGSSNGGRESGNLIQGEGRDCSGMTVGSSHCGSNQVPNPNDLDLSRV 170
           NFSQVPVP LKGDLGSSNGGRESGNLIQGEGRDCS MTVGSSHCGSNQVPN ND D SRV
Sbjct: 193 NFSQVPVP-LKGDLGSSNGGRESGNLIQGEGRDCSAMTVGSSHCGSNQVPNSNDPDASRV 252

Query: 171 STSGFGNAGLSAGFSKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTG 230
           STSGFGNAGLSAG SKED+RKMV QGER KTETMDPT+TSSSGGSGSSMDRSRTIGQS G
Sbjct: 253 STSGFGNAGLSAGLSKEDHRKMVPQGERGKTETMDPTSTSSSGGSGSSMDRSRTIGQSNG 312

Query: 231 GNGNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINE 290
           GN NKRKGRDGEESECQSETAELESAEGNK APRSGSSRRTRAAEVHNLSERRRRERINE
Sbjct: 313 GNRNKRKGRDGEESECQSETAELESAEGNKAAPRSGSSRRTRAAEVHNLSERRRRERINE 372

Query: 291 KMKALQELIPHCNK 303
           KMKALQELIPHCNK
Sbjct: 373 KMKALQELIPHCNK 385

[Close]
BLAST of Cucsat.G9025.T12 vs. ExPASy TrEMBL
Match: A0A6J1FPI6 (transcription factor PIF4-like OS=Cucurbita moschata OX=3662 GN=LOC111445806 PE=4 SV=1)

HSP 1 Score: 384 bits (986), Expect = 7.99e-128
Identity = 210/253 (83.00%), Postives = 218/253 (86.17%), Query Frame = 0 

Query: 51  RFGAFDTATHVTFGNFVKKNSKPPASLAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVN 110
           RFG FDT             SK P  LAEF  N+MPPPRFQ  DS+R NKDLGDLG++VN
Sbjct: 129 RFGVFDTT------------SKHPTGLAEFLTNSMPPPRFQCPDSTRSNKDLGDLGEMVN 188

Query: 111 FSQVPVPPLKGDLGSSNGGRESGNLIQGEGRDCSGMTVGSSHCGSNQVPNPNDLDLSRVS 170
            S+V VP LKGDLGSSNGGRE GNLIQ EGRDCS MTVGSSHCGSNQVPNPNDLD+SRVS
Sbjct: 189 SSRVCVP-LKGDLGSSNGGRECGNLIQVEGRDCSAMTVGSSHCGSNQVPNPNDLDVSRVS 248

Query: 171 TSGFGNAGLSAGFSKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGG 230
           TSGFGNAGLSAG SKEDNRKMV Q ERDKTETMDPT TSSSGGSGSSMDR+RTIGQSTGG
Sbjct: 249 TSGFGNAGLSAGLSKEDNRKMVPQSERDKTETMDPTTTSSSGGSGSSMDRNRTIGQSTGG 308

Query: 231 NGNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEK 290
           N NKRKGRD EESECQSETAELESAEGN+TAPRSGSSRRTR AEVHNLSERRRRERINEK
Sbjct: 309 NSNKRKGRDREESECQSETAELESAEGNRTAPRSGSSRRTRVAEVHNLSERRRRERINEK 368

Query: 291 MKALQELIPHCNK 303
           MKALQELIPHCNK
Sbjct: 369 MKALQELIPHCNK 368

The following BLAST results are available for this feature:
BLAST of Cucsat.G9025.T12 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q10CH51.9e-1860.38Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 OS=Oryza sativa subs... [more]
Q8W2F35.5e-1843.08Transcription factor PIF4 OS=Arabidopsis thaliana OX=3702 GN=PIF4 PE=1 SV=1[more]
Q84LH87.5e-1544.91Transcription factor PIF5 OS=Arabidopsis thaliana OX=3702 GN=PIF5 PE=1 SV=1[more]
O805362.7e-1246.15Transcription factor PIF3 OS=Arabidopsis thaliana OX=3702 GN=PIF3 PE=1 SV=1[more]
Q8GZM72.1e-0933.18Transcription factor PIF1 OS=Arabidopsis thaliana OX=3702 GN=PIF1 PE=1 SV=1[more]
BLAST of Cucsat.G9025.T12 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011653988.12.94e-168100.00transcription factor PIF5 [Cucumis sativus] >XP_011653989.1 transcription factor... [more]
XP_008464685.16.41e-16095.65PREDICTED: transcription factor PIF4-like [Cucumis melo] >XP_008464686.1 PREDICT... [more]
KAA0032908.15.88e-15995.65transcription factor PIF4-like [Cucumis melo var. makuwa] >TYK28090.1 transcript... [more]
XP_038897580.13.41e-15294.47transcription factor PIF4-like isoform X2 [Benincasa hispida] >XP_038897581.1 tr... [more]
XP_038897579.16.48e-15294.47transcription factor PIF4-like isoform X1 [Benincasa hispida][more]
BLAST of Cucsat.G9025.T12 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZR21.42e-168100.00BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G615240 PE=4 S... [more]
A0A1S3CMJ53.10e-16095.65transcription factor PIF4-like OS=Cucumis melo OX=3656 GN=LOC103502508 PE=4 SV=1[more]
A0A5D3DXW52.85e-15995.65Transcription factor PIF4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A6J1CKT05.50e-13987.01transcription factor PIF4-like OS=Momordica charantia OX=3673 GN=LOC111012049 PE... [more]
A0A6J1FPI67.99e-12883.00transcription factor PIF4-like OS=Cucurbita moschata OX=3662 GN=LOC111445806 PE=... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 238..258
NoneNo IPR availableCOILSCoilCoilcoord: 277..297
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..233
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 250..267
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..284
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 269..284
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 189..203
NoneNo IPR availablePANTHERPTHR45855:SF36TRANSCRIPTION FACTOR PIF5coord: 61..303
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 263..306
e-value: 1.3E-11
score: 46.1
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 268..303
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 275..299
e-value: 1.5E-6
score: 28.1
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 271..309
score: 11.585237
IPR031066Basic helix-loop-helix (bHLH) transcription factors ALC-like, plantPANTHERPTHR45855TRANSCRIPTION FACTOR PIF1-RELATEDcoord: 61..303

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G9025Cucsat.G9025gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G9025.T12.E1Cucsat.G9025.T12.E1exon
Cucsat.G9025.T12.E2Cucsat.G9025.T12.E2exon
Cucsat.G9025.T12.E3Cucsat.G9025.T12.E3exon
Cucsat.G9025.T12.E4Cucsat.G9025.T12.E4exon
Cucsat.G9025.T12.E5Cucsat.G9025.T12.E5exon
Cucsat.G9025.T12.E6Cucsat.G9025.T12.E6exon
Cucsat.G9025.T12.E7Cucsat.G9025.T12.E7exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G9025.T12.C1Cucsat.G9025.T12.C1CDS
Cucsat.G9025.T12.C2Cucsat.G9025.T12.C2CDS
Cucsat.G9025.T12.C3Cucsat.G9025.T12.C3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G9025.T12Cucsat.G9025.T12-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0046983 protein dimerization activity