Cucsat.G8930.T11 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTTCTTTTGCACTTTCATGGGTTTGACCTGTAATCGAAATGTCCTGCGAAATGAAATGGGTTGGCTTATACCTTTTCTCAAGAACATGATCGTTTTGATTTGTGAATTTGAGGTGGGGTTCTGTTTCTGTGATCCAGGCAAAGGCTATATAGATTAAGGTTCTGTGGATGATCCATATCTTACTTTCGTTTTTCGTTTGTTCATTTCCCCATGAACTATTTGATCGTAGAAACTACATAAACGCGGTGGGAATAGAATTAGAATGGTGAAATGTATAGTGGAGTTCTCTTTTGTTTTTTCTTGGCTACTTTTTCCAAAAAAAAAGTTCCGTTTATTGACCCCCCAAAAGTTTCCTAAACGGATCGAGTATTGTAAAATAAAGGTGGGGGTGCCTTGTTATTGAAGTTCTATTTGCTATGATATCTCTACTTTGCTTTGTTTGATTTTTGCTTGGTGTGGGCATCTCTCTGCTTTTGCTGAGCTCGCTTTTCTGGCGATTCCTTGGTTCATCAAACTTTATTGTACTTCAATTTTTGCTGCTTGTCGGTTATATCTCAACATCAAGAACCTGAACGATTCTCATCTCTTTTTTTTTCCAAGACCGACATCTTTTCAAAAACCCATCACTTAGTTCCCAAACTGGGCAAGATTTATTCCAAAATTTCAGTTTAGCCATTACTCTATGTTTTCAAAATGGACCATCCTCTAATATCTGTTGTCTTTTTGTTTCTTGAGCCGTTTCTAAATGATAGGTTATGTAATTCTGAACTCCATATTTTTTGGGTTCATATTTTACATCGATTTTCGTTGTGGCAAAATGATATCTAGACTTTCACCAATAGAAGTTAGTTAAATGAGCTTAATCGAATATGAAGAGTGATAAAAAGCACCGAGTTCTTAAGCTTGAATTGGCCACACTCATTGGAATGTCTACTGTTTTGATTTCTCTTGTTTCAGTTTGTTTGTGACGAATGAGAGATCTGAAAAAAACCCTCTAATCTTCTCCTTTCTATAGTTTCTGGTCTTGCAGGAAGTGCTGAAGTTGCACAAAGCCAGGTCTCTGTTGGAATGGGTCTACTAGCTGGCTCAACTGTCATGCTTCTTACACTGATCTGGGGCACATGTGTGATTGTTGGGAAGTGTGACCTTCAAGATTCAGTTGCCATAGATTCACAGGATACAAAAGGGTTTAGCTTGACTGGTATGTCATTTTATCTTAGTTATATTCAACTGAGGTGTCCGATCGTGTTCATGCATGCCTTCGTTTTAGAAAGTTGAATCTTATTCAGGGGAGCGTGATGCTTTCTTATGGTGTGGAAACAAGGATGATGCTATTCGTAATGGATCAATACTTTTTGATCAATAATACACCCTTTTTTTTCATCAAGGCTTACAAAGGAAAAGGACATATTTTGAATAGTATTTAAGGTGTTATGTGAGTTCTGTCATTGACTACAGGCAACTTCTATTGTTTTAGCCGTGACTTGTGACAACGACAATTTATCGTGTTAATCTACTCTTCATATTGCCTAGAAACTGAATATTAGGTAAACTTGGTGAAACTACTTGCAAGCATCAATTAAAGCGTAACGTAGTCGTACATGCTGGGAAGACCCCTAGTTTTTCACCTTATGAGCATACCTGAAGCTGTTAGTACACGGTTGCCTATTAATGCTTCATCATTGCACTTCCATACTTCCTATTGATCTCTTTCTGATTGTCAACTATTCTCAGTCAATGGTCCATTTTCTCATACGTGCTATTGGATCAACTGAATTGGATTTTAATTTCCGAATGTTATATGGTTTTTAAGTTCTGTGGATACTTCGATGCATAAATTTACGTTGAAATTTTTTCTTTGACAGAATCTGGAGTTAGCACTGATATTTGGACCAGCTATGCAGCCAGGATTATGGTTATATCTGTTGTTCCATTTTTGATCGTTCAACTTCCACAAATGCTCAATTCAACATCAGGAAGGCACTTGGCAGTTTTGATTGCTCTTATTATCTCTGTTTCAATGTTCATTATCTATTGCCTTTACCAGGTATTTTTTTCTATTTCTTAGCTCATTTTTTATTAAGTTTACCCAAAATTTTATTTTCATTTTTTTGAATTTGTTGTCTACACAACATTGGAAAATTAAAAAGACCCACATTTACAGATTTTTCATGTTTTAAACTTTTAAACACAAATGCTAACTCAAGTAAGCTCACCTTCATTCAAACACCGAATTTGGTGAGAAAGAAACATAGGTAGCTACTCTAATCTTCCAGAGTTCAAAAGTTATAGCTTCAACGGAAGGATCGATACCTTCACAATGTATTAAATTTATTCTATTAAACTTGATGTTTACCTTTTACTTTAAGGATAAGACTTATTTCGTTCTATTTTTTCTCTCATGTAAATGTTTGAAATCTTACTTCAATGATATCCTACTTCATGAATTCGAGAAAATTTGTGCAGGTCTTCCAACCATGGATTCAAAGGAGGAAACTTGCTTTTGTCAAGCACAAGCATGTTATATTTGGATTTTTAAGACATTTAAAACAGCAAACACTTGGAAGACTCCTGACAGAGAATGGGGAGCCAGATAAAGAAATAATAGAGAAGTTCGTTGGAACTAGAAGTTCAATTGTTCATTTTTATCATCTCCTTTTTATTTTATCATATGCTGATAGTTGCTCAATGAACATAATGACAGGTTATTTTCAAGAATTGATGTGAACAAGGATGGACTTCTATCAGCTTCTGAACTGAGAGCACTAATAGTTGGCATTCAGTTTGACGAGATGGACTTGGATCATGATGATGCTGTTGACAAAATAATGAATGACTTTGATACTTCTCGTGATTCCCATGTTGATTCTAACGAGTTTGGCAATGGAATCATTAGGTGGCTTTCTCAAGTTCAAGGTTCAAGAACTGGCAGAGGTGAGGATGGTCCTCACACAATGAAGTACCTGCATAACTTTCATCAAGTAAGTTGTAAGCTGTTAGCTGTATTTCTCCTTTCAATTTTTAGTTTCGCTTTTCTGAAGCATGTCATGATGTATCTACAGGAAACAAAGAGAGAACACGATTTGCTGGATGTTGGGGAACAGAGCGATGAGGTCGTAGAGGGCGTCGAGGAGGGGAAGGGGGTCTTGATAAAAGCTATACTCTTCTTGTTACTTGGAACCGCCATTGCTGCTGCCTTTGCTGACCCTTTGGTTGACGTCGTACATAACTTCTCTAATGCAACTAAAATCCCTGCGTTCTTTATTTCATTTATTGCTCTGCCATTAGCAACCAACTCAAGTGAAGCAGTCTCTGCTATTATCTTTGCAAGCCGTGACAAGCGAAAAACTGCCTCATTAACATTTTCCGAGGTTTGTCTTCTTTTATACTCAACATTTTGTTTCTTTACTCAGTTAATTTGTACTGGGGACCAGTTGAAAGGAAAACTGGAAGAAATTGGAAGAATGATTGACCTCTTACCTATAAGCTTTCATGGTGCAGCTATATGGAGCAGTTACAATGAACAATGTCCTCTGCCTATCAGTTTTCTTGGCTCTTGTTTACATGAGAGGATTGGTTTGGAACTTTTCATCTGAAGTGCTGGTCATTCTCATCGTTACAATGATAATGGGAGTCATGGGTAGCTTCCGAACCGCCTTCCCTCTCTGGACATCTCTGGTGGCTCTCCTTCTCTACCCCCTCTCTCTTGTGTTGGTCTATGTTCTTGATTATGTCTTTGGTTGGTCATAGATCAGTCGGCATTTTGAGTTTTATTCAGGGGGTTTGTTCCTTTAAATTTCCGGATGTTTTTGCACATACTCTCTGCTGAGCCAATGTTATACAATAACTGTTCTGCTCTCTTTTTATTTGCTTCATTTTTGTGTTGGTATTGATATTGAAAGTGAAGTAAAATAATGAGCATAATTTGTTTATCGAATTATCTAATAAAAAAGTTGGGGGTCATGGTGAACTCAAAAAGAAATTATATATATATGTTCTATGCATCATTTCACGTTGAATTCTCTAAGAATTGTATGTTTCTTTTAATTATTATGTTTTGGCCTTGGTTAATTTCTCGAAGGTTT ATGATATCCTACTTCATGAATTCGAGAAAATTTGTGCAGGTCTTCCAACCATGGATTCAAAGGAGGAAACTTGCTTTTGTCAAGCACAAGCATGTTATATTTGGATTTTTAAGACATTTAAAACAGCAAACACTTGGAAGACTCCTGACAGAGAATGGGGAGCCAGATAAAGAAATAATAGAGAAGTTATTTTCAAGAATTGATGTGAACAAGGATGGACTTCTATCAGCTTCTGAACTGAGAGCACTAATAGTTGGCATTCAGTTTGACGAGATGGACTTGGATCATGATGATGCTGTTGACAAAATAATGAATGACTTTGATACTTCTCGTGATTCCCATGTTGATTCTAACGAGTTTGGCAATGGAATCATTAGGTGGCTTTCTCAAGTTCAAGGTTCAAGAACTGGCAGAGGTGAGGATGGTCCTCACACAATGAAGTACCTGCATAACTTTCATCAAGAAACAAAGAGAGAACACGATTTGCTGGATGTTGGGGAACAGAGCGATGAGGTCGTAGAGGGCGTCGAGGAGGGGAAGGGGGTCTTGATAAAAGCTATACTCTTCTTGTTACTTGGAACCGCCATTGCTGCTGCCTTTGCTGACCCTTTGGTTGACGTCGTACATAACTTCTCTAATGCAACTAAAATCCCTGCGTTCTTTATTTCATTTATTGCTCTGCCATTAGCAACCAACTCAAGTGAAGCAGTCTCTGCTATTATCTTTGCAAGCCGTGACAAGCGAAAAACTGCCTCATTAACATTTTCCGAGCTATATGGAGCAGTTACAATGAACAATGTCCTCTGCCTATCAGTTTTCTTGGCTCTTGTTTACATGAGAGGATTGGTTTGGAACTTTTCATCTGAAGTGCTGGTCATTCTCATCGTTACAATGATAATGGGAGTCATGGGTAGCTTCCGAACCGCCTTCCCTCTCTGGACATCTCTGGTGGCTCTCCTTCTCTACCCCCTCTCTCTTGTGTTGGTCTATGTTCTTGATTATGTCTTTGGTTGGTCATAG MISYFMNSRKFVQVFQPWIQRRKLAFVKHKHVIFGFLRHLKQQTLGRLLTENGEPDKEIIEKLFSRIDVNKDGLLSASELRALIVGIQFDEMDLDHDDAVDKIMNDFDTSRDSHVDSNEFGNGIIRWLSQVQGSRTGRGEDGPHTMKYLHNFHQETKREHDLLDVGEQSDEVVEGVEEGKGVLIKAILFLLLGTAIAAAFADPLVDVVHNFSNATKIPAFFISFIALPLATNSSEAVSAIIFASRDKRKTASLTFSELYGAVTMNNVLCLSVFLALVYMRGLVWNFSSEVLVILIVTMIMGVMGSFRTAFPLWTSLVALLLYPLSLVLVYVLDYVFGWS Homology
BLAST of Cucsat.G8930.T11 vs. ExPASy Swiss-Prot
Match: Q8L636 (Sodium/calcium exchanger NCL OS=Arabidopsis thaliana OX=3702 GN=NCL PE=2 SV=1) HSP 1 Score: 408.7 bits (1049), Expect = 6.5e-113 Identity = 220/329 (66.87%), Postives = 251/329 (76.29%), Query Frame = 0
BLAST of Cucsat.G8930.T11 vs. ExPASy Swiss-Prot
Match: Q5QNI2 (Sodium/calcium exchanger NCL1 OS=Oryza sativa subsp. japonica OX=39947 GN=NCL1 PE=2 SV=1) HSP 1 Score: 388.3 bits (996), Expect = 9.1e-107 Identity = 205/327 (62.69%), Postives = 261/327 (79.82%), Query Frame = 0
BLAST of Cucsat.G8930.T11 vs. ExPASy Swiss-Prot
Match: Q6K3R5 (Sodium/calcium exchanger NCL2 OS=Oryza sativa subsp. japonica OX=39947 GN=NCL2 PE=2 SV=2) HSP 1 Score: 362.5 bits (929), Expect = 5.4e-99 Identity = 197/330 (59.70%), Postives = 249/330 (75.45%), Query Frame = 0
BLAST of Cucsat.G8930.T11 vs. ExPASy Swiss-Prot
Match: Q5KQN0 (Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CAX2 PE=2 SV=2) HSP 1 Score: 47.0 bits (110), Expect = 5.0e-04 Identity = 41/139 (29.50%), Postives = 71/139 (51.08%), Query Frame = 0
BLAST of Cucsat.G8930.T11 vs. NCBI nr
Match: XP_004146032.1 (sodium/calcium exchanger NCL [Cucumis sativus] >KGN55087.1 hypothetical protein Csa_012240 [Cucumis sativus]) HSP 1 Score: 628 bits (1620), Expect = 2.81e-222 Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 0
BLAST of Cucsat.G8930.T11 vs. NCBI nr
Match: ADN33808.1 (sodium/calcium exchanger family protein [Cucumis melo subsp. melo]) HSP 1 Score: 620 bits (1600), Expect = 2.68e-219 Identity = 320/327 (97.86%), Postives = 326/327 (99.69%), Query Frame = 0
BLAST of Cucsat.G8930.T11 vs. NCBI nr
Match: XP_008463718.1 (PREDICTED: uncharacterized protein LOC103501799 [Cucumis melo] >KAA0066783.1 sodium/calcium exchanger family protein [Cucumis melo var. makuwa] >TYK27930.1 sodium/calcium exchanger family protein [Cucumis melo var. makuwa]) HSP 1 Score: 620 bits (1600), Expect = 3.19e-219 Identity = 320/327 (97.86%), Postives = 326/327 (99.69%), Query Frame = 0
BLAST of Cucsat.G8930.T11 vs. NCBI nr
Match: XP_038897650.1 (sodium/calcium exchanger NCL [Benincasa hispida]) HSP 1 Score: 592 bits (1527), Expect = 3.54e-208 Identity = 305/327 (93.27%), Postives = 320/327 (97.86%), Query Frame = 0
BLAST of Cucsat.G8930.T11 vs. NCBI nr
Match: KAG6591925.1 (Sodium/calcium exchanger NCL, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 589 bits (1518), Expect = 3.86e-207 Identity = 303/327 (92.66%), Postives = 318/327 (97.25%), Query Frame = 0
BLAST of Cucsat.G8930.T11 vs. ExPASy TrEMBL
Match: A0A0A0L3B8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G628350 PE=4 SV=1) HSP 1 Score: 628 bits (1620), Expect = 1.36e-222 Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 0
BLAST of Cucsat.G8930.T11 vs. ExPASy TrEMBL
Match: E5GBG6 (Sodium/calcium exchanger family protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 620 bits (1600), Expect = 1.30e-219 Identity = 320/327 (97.86%), Postives = 326/327 (99.69%), Query Frame = 0
BLAST of Cucsat.G8930.T11 vs. ExPASy TrEMBL
Match: A0A5A7VFE4 (Sodium/calcium exchanger family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001180 PE=4 SV=1) HSP 1 Score: 620 bits (1600), Expect = 1.54e-219 Identity = 320/327 (97.86%), Postives = 326/327 (99.69%), Query Frame = 0
BLAST of Cucsat.G8930.T11 vs. ExPASy TrEMBL
Match: A0A1S3CJX3 (uncharacterized protein LOC103501799 OS=Cucumis melo OX=3656 GN=LOC103501799 PE=4 SV=1) HSP 1 Score: 620 bits (1600), Expect = 1.54e-219 Identity = 320/327 (97.86%), Postives = 326/327 (99.69%), Query Frame = 0
BLAST of Cucsat.G8930.T11 vs. ExPASy TrEMBL
Match: A0A6J1IGZ1 (sodium/calcium exchanger NCL-like OS=Cucurbita maxima OX=3661 GN=LOC111476856 PE=4 SV=1) HSP 1 Score: 589 bits (1518), Expect = 3.24e-207 Identity = 303/327 (92.66%), Postives = 318/327 (97.25%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|