Cucsat.G8906.T4 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G8906.T4
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Sodium-bile acid cotransporter
Location	ctg1635: 1620095 .. 1623784 (-)
RNA-Seq Expression	Cucsat.G8906.T4
Synteny	Cucsat.G8906.T4

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTTTTGACATCGAATCAATTGACCAAAATATTACATTAACGTCAAAAATGGTTTCCCCGGTCCCATTGCCACTCTCCACCGCTCCACTTAACCAAGCTGCCCAAAGGGTTTTGGCGGGATTCAACATCGCCGTCACCGGAGTTTCCCCGGTTCTGGAAACACTGGGCTGAGCTGAGCTTCACACTCACCTCATTGTCGAAGTTCCATTCATTCTTCTTTTGGTCGTCGCCGACACACACAGAATGCAGTCTCTTCCATCAGATACTTGCGTTCTTCGTCCTTATCGATATTCCCTTTCGACCTTCAGACCTCGCACTTCACTTGTAACTTCCTCTTCTTCTTCTTTTAACATCCCTCTCAATTCGTCTTTGTCCTCTTTTTCTCTGGTTGGGTTACGTCGTGAATCTCCTCTACTGTTATTCGGCGATCCAATTTGGAACGGGAACCCTTTTGTTTGCTCCCAAACCAAACGGAGGGATTTTGGATTGTTAGTTCCTCCTCTTCGATGCGAACCGTCATCGAACGGCAACAGCGTTCAGGGCGAGCGGAGTTTGATGCAATGGATTGAATTGATCGGAGAAGCTTTGTCTACTGCGTTTCCTGTTTGGGTGGCGCTAGGTTGCGTTTTAGGGCTGCTCAGACCGGCTTCCTATGCTTGGGTTCAACCGAGATGGACTGTTCTTGGCATTACTCTCACAATGCTTGGTATGGGCATGACATTGACCCTCGACGATCTTCGTGGAGCCCTGGCTATGCCTAAGGAATTGATTTCTGGGTTCGTGCTCCAGTATTCGGTTAGTTCGTTTGTTTACTGCGATTGTGCTATTGTTTGAACGTATCTGAAATTCATTGATTTTTTTGATCTTGAGAAATTTCTCGCGTATGCTGCATAATTTTGAATGTGTGTGACTTGGGTTTTGGAATATTGGAAGCTGTTCTAGTTCACAGAAAGAGGGAAAGGAACAACAGAAATGACTATGGCCATCAGAAATGTTCCAAATCTCGCAACGGGTGTTGATGGTGAATCATAGCGAGATGAAGAATTACTATTACGAGCTAAATGGATGATTGATTCTGAAGAGTTACTATTACGAGCTAAATGGATGATTGATTCTGAAGAATTACTATTACGAGCTAAATGGATGATTGATTCTGAAGAGTTACTATTACGAGCTAAATGGATGATTGATTCTGAAGAATTACTATTACGAGCTAAATGGATGATTGATTCTTCATCTTTAATATTTCACTACTTTTTTTGAATTGTATGTTAACTGTGTTCCGAAAAGCATTTCGTTTGGATGAAATCCTTCTATTATTGATCTACTGGTTAGATTTTTCTGAGTTTGTACTGAAGGAAACAATTGATAAAAAATAGTGTGACATCGAGGATTTCCACTTCACTTTCTTTGATAGTTTTAGGGACTTCAATCTATAGATGAAATTATAAGATAGACTTTCATGGTTCTTGGTGCAGGTGATGCCAATATCAGGCTTTCTTGTCAGCAAGCTTTTAAATTTGCCATCTTACTATGCAGCTGGTTTAATATTGGTTGGTTGCTGTCCTGGTGGTATGCATCAGTTGGTAGTGTCAATTATCTTTCTCATTCTATTTATTTTAACAGTTTGATCTATCTTTGGTTTCAGGAACAGCAAGCAATATAGTCACTTACATTGCAAGGTATTCTAACTTTTGAAATGCCACCATTTAGCTTCTTTCTTGTTAAATTATGTTAGAGGTTAAGAAAATTTTTATGCCTTTCCAGGGGAAATGTAGCTCTTTCTGTGCTGATGACCGCCACAAGCACTATGGCAGCCGTGGTTAGCAAGCCTCCATAGTGCTTTTGCTTTTTTCGTTTGTTTAGTTTCTAAATTCAAGTTTGCATCTTAGCATGATCTGTTTTTCTTTCGGTTTTATATAGTTCTTCTGTCGTTAAAACAGGACCTAATATCTTTGTTAGTAGAAATGACAACACATAAGAAACCATAGTTTACTCCTAAGTTCATATTTGCACAAACATAGGAAAAACCTTTAACTGAACACAACAATAAATTTTTTATCTACCACGTTACTTTTTTTTTCTCTTCAAAGATATTCGGTTTGATGAGTGTTTACTGTAGAGATGTCAGTGCTATGAGTGAGGAGTCCCTCCTTAATCCGCCTTTTGGGGAGAAAGCCCGGTTTATTTGGCTTGTTGGTGTGTGTGCAGTGTTATGGGTTTTGTGGGATGTGAGGAACAGTGGAGTGTCTGGGGGAGTGGAGAGAAACCCTAGGGAGCTTTGGTCCCTCGTTCGTTTTCATGTTTTTCTCTAGGCTTCAATTTCGTAGATTTTTGGTAATTATTCTATAGGAATGATTTTGCATAGTTGGAGCCCGTTCTTGTAGAGGGCATCTCTCCTTTTTGTGGGCTTTGTTTCCTTAGAACTGTGCATTTTTTCCTTTTTCTCAATGGAAGTGATTATTTTCGAAGTTTCATAGATATTGAAATCTAAGTTATCATTTCAATTTTACAGATCATGACCCCTTTTCTCACTGCCAAACTTGCTGGTCAATTTGTTGCTGTGGACGCAGCTGGGTTGTTAATGTCCACCCTGCAGGTGCGATTTCTAACAAACGAAAGCAACATCAATATTTTTCTTAACATTAAATTTCTCTCAAGTAACTTCCCTTTCCTTCACATACAACAGATTGTGCTTCTTCCAGTGTTGGGTGGGGCATTTTTAAACCAGTATTTCCATGGGTTGGTTAGATTTGTCTCTCCATTCATGCCCCCTATTGCTGTTGGCACTGTTGCTATTTTATGTGGACATGCAATTGCTCAGAGCTCCTCTGCTATTCGGATGTCTGGTCAGCAAGTAGTCCTGGCTGCAGCTCTTCTTCATGCTTCAGGATTTTTCTTCGGTTATGTACTTGCAAGATTGCTTGGCATTGACATTGCATCTTCTCGAACGATCTCCATTGAAGTTGGAATGCAGGTAAAGCATTTCATTTAGAATAATTGCAATGGATAGTACTTTTATGATAAATAATTAAACGCATAGCAATGTGTTAAAAGAATTTTAAATATGGGGAAAATCTATTAATGACAAACATTTATTAGAAATATGGACTATGGTAGACTTTGAGAATTGATTCAAGATTGCATTATATTTGTAAATTGTTTTGTATTGTGCTACATTTATTCATATTTGGGTCTGATCGCTGTTTTTGCAACTATCCCTTTCATTTACTTTCGGGGTATCTTAGTTGCACTCTTTGGCAAGTCTGCTGCCAAGTGTCTTACTACATAACTCAATCAGTTTCGGCATTTTTAGGTTGATCTGGTTTTTAACTTTTAACAATGAATAAATTTATGTGACAGAACTCGGTGCTAGGGGTTGTTCTTGCTAGCCAGCACTTTGGAAATCCTCTTACGGCAGTGCCCTGTGCAGTTTCAAGTGTTTGCCACTCAATCTTTGGCAGCGTTCTTGCTGGGATTTGGAGGCAAAGCAAAGACTAGGTGAAAATGATGTCTAAATTTTGTAAGCATCATTTGTGTTTTATCCTTTTGGTTTAGTAGATTTTTGTAACATTTGAATAGTTCTTGACAGGTTGTTTGCAATCATTCCATGTTTGAACTTTGTCTAATCTTGTTTTAGAATAAATCTTAAATTGTTTTTTTCCAATAAAAATAAATTTAATTAAGTG

Coding sequence (CDS)

ATGCAGTCTCTTCCATCAGATACTTGCGTTCTTCGTCCTTATCGATATTCCCTTTCGACCTTCAGACCTCGCACTTCACTTGTAACTTCCTCTTCTTCTTCTTTTAACATCCCTCTCAATTCGTCTTTGTCCTCTTTTTCTCTGGTTGGGTTACGTCGTGAATCTCCTCTACTGTTATTCGGCGATCCAATTTGGAACGGGAACCCTTTTGTTTGCTCCCAAACCAAACGGAGGGATTTTGGATTGTTAGTTCCTCCTCTTCGATGCGAACCGTCATCGAACGGCAACAGCGTTCAGGGCGAGCGGAGTTTGATGCAATGGATTGAATTGATCGGAGAAGCTTTGTCTACTGCGTTTCCTGTTTGGGTGGCGCTAGGTTGCGTTTTAGGGCTGCTCAGACCGGCTTCCTATGCTTGGGTTCAACCGAGATGGACTGTTCTTGGCATTACTCTCACAATGCTTGGTATGGGCATGACATTGACCCTCGACGATCTTCGTGGAGCCCTGGCTATGCCTAAGGAATTGATTTCTGGGTTCGTGCTCCAGTATTCGGTGATGCCAATATCAGGCTTTCTTGTCAGCAAGCTTTTAAATTTGCCATCTTACTATGCAGCTGGTTTAATATTGGTTGGTTGCTGTCCTGGTGGAACAGCAAGCAATATAGTCACTTACATTGCAAGGGGAAATGTAGCTCTTTCTGTGCTGATGACCGCCACAAGCACTATGGCAGCCGTGGTTAGCAAGCCTCCATAG

Protein sequence

MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLFGDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFPVWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFVLQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTATSTMAAVVSKPP

Homology

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BLAST of Cucsat.G8906.T4 vs. ExPASy Swiss-Prot
Match: Q93YR2 (Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BASS1 PE=2 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.9e-64
Identity = 123/181 (67.96%), Postives = 151/181 (83.43%), Query Frame = 0


Query: 69  PFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFPVWVALGCV 128
           P  C ++ R DF   VP  RC  SSN    + ++S  +W+E +GEA+STAFP+WV+LGC+
Sbjct: 57  PISCRRS-RFDF---VP--RCGISSNDLPTEKKKSFGEWVEFVGEAVSTAFPIWVSLGCL 116

Query: 129 LGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFVLQYSVMPI 188
           LGL+RP+++ WV P WT++G+T+TMLGMGMTLTLDDLRGAL+MPKEL +GF+LQYSVMP+
Sbjct: 117 LGLMRPSTFNWVTPNWTIVGLTITMLGMGMTLTLDDLRGALSMPKELFAGFLLQYSVMPL 176

Query: 189 SGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTATSTMAAVVSK 248
           S F VSKLLNLP +YAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTA ST++AV+  
Sbjct: 177 SAFFVSKLLNLPPHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTVSAVIMT 231

Query: 249 P 250
           P
Sbjct: 237 P 231

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BLAST of Cucsat.G8906.T4 vs. ExPASy Swiss-Prot
Match: Q7XVB3 (Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=BASS1 PE=2 SV=2)

HSP 1 Score: 208.0 bits (528), Expect = 1.2e-52
Identity = 110/177 (62.15%), Postives = 129/177 (72.88%), Query Frame = 0


Query: 84  VPPLRCEPSSN--------GNSVQGERSLMQWIEL---IGEALSTAFPVWVALGCVLGLL 143
           +P  RC  +++        G S   E  ++ W +L   +GE LS  FPVWVA  C + L 
Sbjct: 60  IPSSRCHAAADPAPSKIPGGGSGALEAGVVGWRDLLLQVGEVLSLGFPVWVASACAVALW 119

Query: 144 RPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFVLQYSVMPISGFL 203
           RP ++ WV P   ++GI+ TMLGMGMTLTLDDL+ AL MPKEL SGF+LQYSVMP+SGFL
Sbjct: 120 RPPAFLWVSPMAQIVGISFTMLGMGMTLTLDDLKTALLMPKELASGFLLQYSVMPLSGFL 179

Query: 204 VSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTATSTMAAVVSKP 250
           +SKLLNLPSYYAAGLILV CCPGGTASNIVTY+ARGNVALSVLMTA ST AA    P
Sbjct: 180 ISKLLNLPSYYAAGLILVSCCPGGTASNIVTYLARGNVALSVLMTAASTFAAAFLTP 236

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BLAST of Cucsat.G8906.T4 vs. ExPASy Swiss-Prot
Match: Q1EBV7 (Sodium/pyruvate cotransporter BASS2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BASS2 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.0e-31
Identity = 70/148 (47.30%), Postives = 98/148 (66.22%), Query Frame = 0


Query: 102 RSLMQWIELIGEALSTAFPVWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLT 161
           + L Q+ ++I E L+T FP+WV LG ++G+ +P+   W++     LG+   ML MG+TLT
Sbjct: 89  KELSQYEKII-ELLTTLFPLWVILGTLVGIFKPSLVTWLETDLFTLGLGFLMLSMGLTLT 148

Query: 162 LDDLRGALAMPKELISGFVLQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNI 221
            +D R  L  P  +  GF+ QY + PI GFL++  L L +  A GLILV CCPGG ASN+
Sbjct: 149 FEDFRRCLRNPWTVGVGFLAQYMIKPILGFLIAMTLKLSAPLATGLILVSCCPGGQASNV 208

Query: 222 VTYIARGNVALSVLMTATSTMAAVVSKP 250
            TYI++GNVALSVLMT  ST+ A++  P
Sbjct: 209 ATYISKGNVALSVLMTTCSTIGAIIMTP 235

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BLAST of Cucsat.G8906.T4 vs. ExPASy Swiss-Prot
Match: Q5VRB2 (Probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=BASS2 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-30
Identity = 70/162 (43.21%), Postives = 99/162 (61.11%), Query Frame = 0


Query: 88  RCEPSSNGNSVQGERSLMQWIELIGEALSTAFPVWVALGCVLGLLRPASYAWVQPRWTVL 147
           + E + + N  +   S     E I E L+T FPVWV LG ++G+ +P+   W++     +
Sbjct: 83  KAEANISSNLPESIPSEANQYEKIVELLTTLFPVWVILGTIIGIYKPSMVTWLETDLFTV 142

Query: 148 GITLTMLGMGMTLTLDDLRGALAMPKELISGFVLQYSVMPISGFLVSKLLNLPSYYAAGL 207
           G+   ML MG+TLT +D R  +  P  +  GF+ QY + P+ GF ++  L L +  A GL
Sbjct: 143 GLGFLMLSMGLTLTFEDFRRCMRNPWTVGVGFLAQYLIKPMLGFAIAMTLKLSAPLATGL 202

Query: 208 ILVGCCPGGTASNIVTYIARGNVALSVLMTATSTMAAVVSKP 250
           ILV CCPGG ASN+ TYI++GNVALSVLMT  ST+ A+V  P
Sbjct: 203 ILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTP 244

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BLAST of Cucsat.G8906.T4 vs. ExPASy Swiss-Prot
Match: O34524 (Uncharacterized sodium-dependent transporter YocS OS=Bacillus subtilis (strain 168) OX=224308 GN=yocS PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.2e-24
Identity = 60/145 (41.38%), Postives = 89/145 (61.38%), Query Frame = 0


Query: 105 MQWIELIGEALSTAFPVWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDD 164
           M  I  I       F +WV +  VLG   P+ + W+    T+  + + M GMG+TL  DD
Sbjct: 1   MDIIRKISHFAGQTFGIWVIVFAVLGFSFPSLFTWISSYITIF-LGIIMFGMGLTLQADD 60

Query: 165 LRGALAMPKELISGFVLQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTY 224
            +  +  P ++I G + QY++MP+  F ++  L+LP+  A G+ILVGCCPGGTASN++T+
Sbjct: 61  FKELVRKPWQVIIGVIAQYTIMPLVAFGLAFGLHLPAEIAVGVILVGCCPGGTASNVMTF 120

Query: 225 IARGNVALSVLMTATSTMAAVVSKP 250
           +A+GN ALSV +T  ST+ A V  P
Sbjct: 121 LAKGNTALSVAVTTISTLLAPVVTP 144

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BLAST of Cucsat.G8906.T4 vs. NCBI nr
Match: XP_004146013.1 (probable sodium/metabolite cotransporter BASS1, chloroplastic [Cucumis sativus] >KGN55025.1 hypothetical protein Csa_012383 [Cucumis sativus])

HSP 1 Score: 483 bits (1242), Expect = 5.11e-169
Identity = 246/249 (98.80%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 1   MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF 60
           MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF
Sbjct: 1   MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF 60

Query: 61  GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP 120
           GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP
Sbjct: 61  GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP 120

Query: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180
           VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV
Sbjct: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180

Query: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTATS 240
           LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTATS
Sbjct: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTATS 240

Query: 241 TMAAVVSKP 249
           TMAAV+  P
Sbjct: 241 TMAAVIMTP 249

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BLAST of Cucsat.G8906.T4 vs. NCBI nr
Match: XP_008463794.1 (PREDICTED: LOW QUALITY PROTEIN: probable sodium/metabolite cotransporter BASS1, chloroplastic [Cucumis melo] >TYK27850.1 putative sodium/metabolite cotransporter BASS1 [Cucumis melo var. makuwa])

HSP 1 Score: 457 bits (1176), Expect = 5.21e-159
Identity = 237/249 (95.18%), Postives = 239/249 (95.98%), Query Frame = 0


Query: 1   MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF 60
           MQSLPSDTCVLRPYRYSLSTF PRTSLVTSSSS  N PLNSSLSSFSLVGLRRES LLLF
Sbjct: 1   MQSLPSDTCVLRPYRYSLSTFTPRTSLVTSSSS--NNPLNSSLSSFSLVGLRRESSLLLF 60

Query: 61  GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP 120
           GD IWN NPFVCSQTKR DFGLLVPPLRCEPSSNGNS+QGERSLMQWIELIGEALSTAFP
Sbjct: 61  GDRIWNRNPFVCSQTKRNDFGLLVPPLRCEPSSNGNSIQGERSLMQWIELIGEALSTAFP 120

Query: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180
           VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV
Sbjct: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180

Query: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTATS 240
           LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTATS
Sbjct: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTATS 240

Query: 241 TMAAVVSKP 249
           TMAAV+  P
Sbjct: 241 TMAAVIMTP 247

[Close]

BLAST of Cucsat.G8906.T4 vs. NCBI nr
Match: KAA0066700.1 (putative sodium/metabolite cotransporter BASS1 [Cucumis melo var. makuwa])

HSP 1 Score: 434 bits (1116), Expect = 7.37e-150
Identity = 227/251 (90.44%), Postives = 233/251 (92.83%), Query Frame = 0


Query: 1   MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF 60
           MQSLPSDTCVLRPYRYSLSTF PRTSLVTSSSS  N PLNSSLSSFSLVGLRRES LLLF
Sbjct: 1   MQSLPSDTCVLRPYRYSLSTFTPRTSLVTSSSS--NNPLNSSLSSFSLVGLRRESSLLLF 60

Query: 61  GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP 120
           GD IWN NPFVCSQTKR DFGLLVPPLRCEPSSNGNS+QGERSLMQWIELIGEALSTAFP
Sbjct: 61  GDRIWNRNPFVCSQTKRNDFGLLVPPLRCEPSSNGNSIQGERSLMQWIELIGEALSTAFP 120

Query: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180
           VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV
Sbjct: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180

Query: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNI--VTYIARGNVALSVLMTA 240
           LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGG    +  +  ++RGNVALSVLMTA
Sbjct: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGMHQLVAKILCLSRGNVALSVLMTA 240

Query: 241 TSTMAAVVSKP 249
           TSTMAAV+  P
Sbjct: 241 TSTMAAVIMTP 249

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BLAST of Cucsat.G8906.T4 vs. NCBI nr
Match: XP_038898003.1 (probable sodium/metabolite cotransporter BASS1, chloroplastic [Benincasa hispida])

HSP 1 Score: 397 bits (1020), Expect = 3.01e-135
Identity = 213/253 (84.19%), Postives = 224/253 (88.54%), Query Frame = 0


Query: 1   MQSLPSDTCVLRPY----RYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESP 60
           MQSLPSDT VLRP+    RYSLS+FR RTSLVTSS+S  N PL SSLSS S  G  RES 
Sbjct: 1   MQSLPSDTFVLRPHIQSHRYSLSSFRRRTSLVTSSTS--NNPLPSSLSSSSPAGFHRESS 60

Query: 61  LLLFGDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALS 120
           L LF + IW+ N F CS+TKR D GLLVPPLRCE SSNGNSVQGERSLMQWIEL+GEALS
Sbjct: 61  LRLFNERIWSRNAFFCSKTKRIDVGLLVPPLRCEASSNGNSVQGERSLMQWIELLGEALS 120

Query: 121 TAFPVWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELI 180
           TAFPVWVALGC+LGLLRPASYAWVQP WTVLGITLTMLGMGMTLTL+DLRGALAMPKELI
Sbjct: 121 TAFPVWVALGCLLGLLRPASYAWVQPGWTVLGITLTMLGMGMTLTLEDLRGALAMPKELI 180

Query: 181 SGFVLQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLM 240
           SGF+LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLM
Sbjct: 181 SGFLLQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLM 240

Query: 241 TATSTMAAVVSKP 249
           TA STMAAV+  P
Sbjct: 241 TAASTMAAVIMTP 251

[Close]

BLAST of Cucsat.G8906.T4 vs. NCBI nr
Match: XP_022982182.1 (probable sodium/metabolite cotransporter BASS1, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 356 bits (914), Expect = 7.25e-120
Identity = 191/255 (74.90%), Postives = 212/255 (83.14%), Query Frame = 0


Query: 1   MQSLPSDTCVLRPYRY----SLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESP 60
           M+SLP DTCVLRP+      SLS+F PRTSL+TSS+S      N+  SS S     R + 
Sbjct: 1   MRSLPLDTCVLRPHIQPPPRSLSSFSPRTSLLTSSTS------NNRFSSASAATFHRNAS 60

Query: 61  LLLFGDPI--WNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEA 120
           L +F + I  WN NP +CS+TKR D GLLVPPL+C  SS+ N VQ ERSLMQWIELIGEA
Sbjct: 61  LQIFNERISVWNRNPLLCSKTKRIDVGLLVPPLQCGSSSDTNGVQSERSLMQWIELIGEA 120

Query: 121 LSTAFPVWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKE 180
           LSTAFPVWVALGC+LGLLRPA Y WVQPRWTVLG+T+TMLGMGMTLTLDDLRGALAMPKE
Sbjct: 121 LSTAFPVWVALGCLLGLLRPAYYDWVQPRWTVLGLTVTMLGMGMTLTLDDLRGALAMPKE 180

Query: 181 LISGFVLQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSV 240
           LISGF+LQYSVMPISG++VSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSV
Sbjct: 181 LISGFLLQYSVMPISGYVVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSV 240

Query: 241 LMTATSTMAAVVSKP 249
           LMTA ST+AAV+  P
Sbjct: 241 LMTAMSTVAAVIMTP 249

[Close]

BLAST of Cucsat.G8906.T4 vs. ExPASy TrEMBL
Match: A0A0A0KZF9 (Sodium-bile acid cotransporter OS=Cucumis sativus OX=3659 GN=Csa_4G622840 PE=3 SV=1)

HSP 1 Score: 483 bits (1242), Expect = 2.48e-169
Identity = 246/249 (98.80%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 1   MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF 60
           MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF
Sbjct: 1   MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF 60

Query: 61  GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP 120
           GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP
Sbjct: 61  GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP 120

Query: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180
           VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV
Sbjct: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180

Query: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTATS 240
           LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTATS
Sbjct: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTATS 240

Query: 241 TMAAVVSKP 249
           TMAAV+  P
Sbjct: 241 TMAAVIMTP 249

[Close]

BLAST of Cucsat.G8906.T4 vs. ExPASy TrEMBL
Match: A0A5D3DX81 (Putative sodium/metabolite cotransporter BASS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00270 PE=3 SV=1)

HSP 1 Score: 457 bits (1176), Expect = 2.52e-159
Identity = 237/249 (95.18%), Postives = 239/249 (95.98%), Query Frame = 0


Query: 1   MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF 60
           MQSLPSDTCVLRPYRYSLSTF PRTSLVTSSSS  N PLNSSLSSFSLVGLRRES LLLF
Sbjct: 1   MQSLPSDTCVLRPYRYSLSTFTPRTSLVTSSSS--NNPLNSSLSSFSLVGLRRESSLLLF 60

Query: 61  GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP 120
           GD IWN NPFVCSQTKR DFGLLVPPLRCEPSSNGNS+QGERSLMQWIELIGEALSTAFP
Sbjct: 61  GDRIWNRNPFVCSQTKRNDFGLLVPPLRCEPSSNGNSIQGERSLMQWIELIGEALSTAFP 120

Query: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180
           VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV
Sbjct: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180

Query: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTATS 240
           LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTATS
Sbjct: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTATS 240

Query: 241 TMAAVVSKP 249
           TMAAV+  P
Sbjct: 241 TMAAVIMTP 247

[Close]

BLAST of Cucsat.G8906.T4 vs. ExPASy TrEMBL
Match: A0A1S3CK43 (LOW QUALITY PROTEIN: probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501847 PE=3 SV=1)

HSP 1 Score: 457 bits (1176), Expect = 2.52e-159
Identity = 237/249 (95.18%), Postives = 239/249 (95.98%), Query Frame = 0


Query: 1   MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF 60
           MQSLPSDTCVLRPYRYSLSTF PRTSLVTSSSS  N PLNSSLSSFSLVGLRRES LLLF
Sbjct: 1   MQSLPSDTCVLRPYRYSLSTFTPRTSLVTSSSS--NNPLNSSLSSFSLVGLRRESSLLLF 60

Query: 61  GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP 120
           GD IWN NPFVCSQTKR DFGLLVPPLRCEPSSNGNS+QGERSLMQWIELIGEALSTAFP
Sbjct: 61  GDRIWNRNPFVCSQTKRNDFGLLVPPLRCEPSSNGNSIQGERSLMQWIELIGEALSTAFP 120

Query: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180
           VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV
Sbjct: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180

Query: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTATS 240
           LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTATS
Sbjct: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTATS 240

Query: 241 TMAAVVSKP 249
           TMAAV+  P
Sbjct: 241 TMAAVIMTP 247

[Close]

BLAST of Cucsat.G8906.T4 vs. ExPASy TrEMBL
Match: A0A5A7VHN1 (Putative sodium/metabolite cotransporter BASS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G00330 PE=3 SV=1)

HSP 1 Score: 434 bits (1116), Expect = 3.57e-150
Identity = 227/251 (90.44%), Postives = 233/251 (92.83%), Query Frame = 0


Query: 1   MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF 60
           MQSLPSDTCVLRPYRYSLSTF PRTSLVTSSSS  N PLNSSLSSFSLVGLRRES LLLF
Sbjct: 1   MQSLPSDTCVLRPYRYSLSTFTPRTSLVTSSSS--NNPLNSSLSSFSLVGLRRESSLLLF 60

Query: 61  GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP 120
           GD IWN NPFVCSQTKR DFGLLVPPLRCEPSSNGNS+QGERSLMQWIELIGEALSTAFP
Sbjct: 61  GDRIWNRNPFVCSQTKRNDFGLLVPPLRCEPSSNGNSIQGERSLMQWIELIGEALSTAFP 120

Query: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180
           VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV
Sbjct: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180

Query: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNI--VTYIARGNVALSVLMTA 240
           LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGG    +  +  ++RGNVALSVLMTA
Sbjct: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGMHQLVAKILCLSRGNVALSVLMTA 240

Query: 241 TSTMAAVVSKP 249
           TSTMAAV+  P
Sbjct: 241 TSTMAAVIMTP 249

[Close]

BLAST of Cucsat.G8906.T4 vs. ExPASy TrEMBL
Match: A0A6J1IVZ2 (probable sodium/metabolite cotransporter BASS1, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481085 PE=3 SV=1)

HSP 1 Score: 356 bits (914), Expect = 3.51e-120
Identity = 191/255 (74.90%), Postives = 212/255 (83.14%), Query Frame = 0


Query: 1   MQSLPSDTCVLRPYRY----SLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESP 60
           M+SLP DTCVLRP+      SLS+F PRTSL+TSS+S      N+  SS S     R + 
Sbjct: 1   MRSLPLDTCVLRPHIQPPPRSLSSFSPRTSLLTSSTS------NNRFSSASAATFHRNAS 60

Query: 61  LLLFGDPI--WNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEA 120
           L +F + I  WN NP +CS+TKR D GLLVPPL+C  SS+ N VQ ERSLMQWIELIGEA
Sbjct: 61  LQIFNERISVWNRNPLLCSKTKRIDVGLLVPPLQCGSSSDTNGVQSERSLMQWIELIGEA 120

Query: 121 LSTAFPVWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKE 180
           LSTAFPVWVALGC+LGLLRPA Y WVQPRWTVLG+T+TMLGMGMTLTLDDLRGALAMPKE
Sbjct: 121 LSTAFPVWVALGCLLGLLRPAYYDWVQPRWTVLGLTVTMLGMGMTLTLDDLRGALAMPKE 180

Query: 181 LISGFVLQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSV 240
           LISGF+LQYSVMPISG++VSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSV
Sbjct: 181 LISGFLLQYSVMPISGYVVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSV 240

Query: 241 LMTATSTMAAVVSKP 249
           LMTA ST+AAV+  P
Sbjct: 241 LMTAMSTVAAVIMTP 249

The following BLAST results are available for this feature:

BLAST of Cucsat.G8906.T4 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93YR2	1.9e-64	67.96	Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Arabidopsis tha...	[more]
Q7XVB3	1.2e-52	62.15	Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Oryza sativa su...	[more]
Q1EBV7	6.0e-31	47.30	Sodium/pyruvate cotransporter BASS2, chloroplastic OS=Arabidopsis thaliana OX=37...	[more]
Q5VRB2	1.7e-30	43.21	Probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Oryza sativa su...	[more]
O34524	4.2e-24	41.38	Uncharacterized sodium-dependent transporter YocS OS=Bacillus subtilis (strain 1...	[more]

BLAST of Cucsat.G8906.T4 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146013.1	5.11e-169	98.80	probable sodium/metabolite cotransporter BASS1, chloroplastic [Cucumis sativus] ...	[more]
XP_008463794.1	5.21e-159	95.18	PREDICTED: LOW QUALITY PROTEIN: probable sodium/metabolite cotransporter BASS1, ...	[more]
KAA0066700.1	7.37e-150	90.44	putative sodium/metabolite cotransporter BASS1 [Cucumis melo var. makuwa]	[more]
XP_038898003.1	3.01e-135	84.19	probable sodium/metabolite cotransporter BASS1, chloroplastic [Benincasa hispida...	[more]
XP_022982182.1	7.25e-120	74.90	probable sodium/metabolite cotransporter BASS1, chloroplastic isoform X2 [Cucurb...	[more]

BLAST of Cucsat.G8906.T4 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZF9	2.48e-169	98.80	Sodium-bile acid cotransporter OS=Cucumis sativus OX=3659 GN=Csa_4G622840 PE=3 S...	[more]
A0A5D3DX81	2.52e-159	95.18	Putative sodium/metabolite cotransporter BASS1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3CK43	2.52e-159	95.18	LOW QUALITY PROTEIN: probable sodium/metabolite cotransporter BASS1, chloroplast...	[more]
A0A5A7VHN1	3.57e-150	90.44	Putative sodium/metabolite cotransporter BASS1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1IVZ2	3.51e-120	74.90	probable sodium/metabolite cotransporter BASS1, chloroplastic isoform X2 OS=Cucu...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038770	Sodium/solute symporter superfamily	GENE3D	1.20.1530.20		coord: 102..250 e-value: 2.8E-40 score: 140.2
IPR002657	Bile acid:sodium symporter/arsenical resistance protein Acr3	PFAM	PF01758	SBF	coord: 147..247 e-value: 9.5E-28 score: 97.2
IPR004710	Bile acid:sodium symporter	PANTHER	PTHR10361	SODIUM-BILE ACID COTRANSPORTER	coord: 85..249
None	No IPR available	PANTHER	PTHR10361:SF64	SODIUM/METABOLITE COTRANSPORTER BASS1, CHLOROPLASTIC-RELATED	coord: 85..249

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G8906	Cucsat.G8906	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G8906.T4.E1	Cucsat.G8906.T4.E1	exon
Cucsat.G8906.T4.E2	Cucsat.G8906.T4.E2	exon
Cucsat.G8906.T4.E3	Cucsat.G8906.T4.E3	exon
Cucsat.G8906.T4.E4	Cucsat.G8906.T4.E4	exon
Cucsat.G8906.T4.E5	Cucsat.G8906.T4.E5	exon
Cucsat.G8906.T4.E6	Cucsat.G8906.T4.E6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G8906.T4.C4	Cucsat.G8906.T4.C4	CDS
Cucsat.G8906.T4.C3	Cucsat.G8906.T4.C3	CDS
Cucsat.G8906.T4.C2	Cucsat.G8906.T4.C2	CDS
Cucsat.G8906.T4.C1	Cucsat.G8906.T4.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G8906.T4	Cucsat.G8906.T4-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098717	pantothenate import across plasma membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane