Cucsat.G8906.T10 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G8906.T10
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Sodium-bile acid cotransporter
Location	ctg1635: 1620101 .. 1623756 (-)
RNA-Seq Expression	Cucsat.G8906.T10
Synteny	Cucsat.G8906.T10

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATATTACATTAACGTCAAAAATGGTTTCCCCGGTCCCATTGCCACTCTCCACCGCTCCACTTAACCAAGCTGCCCAAAGGGTTTTGGCGGGATTCAACATCGCCGTCACCGGAGTTTCCCCGGTTCTGGAAACACTGGGCTGAGCTGAGCTTCACACTCACCTCATTGTCGAAGTTCCATTCATTCTTCTTTTGGTCGTCGCCGACACACACAGAATGCAGTCTCTTCCATCAGATACTTGCGTTCTTCGTCCTTATCGATATTCCCTTTCGACCTTCAGACCTCGCACTTCACTTGTAACTTCCTCTTCTTCTTCTTTTAACATCCCTCTCAATTCGTCTTTGTCCTCTTTTTCTCTGGTTGGGTTACGTCGTGAATCTCCTCTACTGTTATTCGGCGATCCAATTTGGAACGGGAACCCTTTTGTTTGCTCCCAAACCAAACGGAGGGATTTTGGATTGTTAGTTCCTCCTCTTCGATGCGAACCGTCATCGAACGGCAACAGCGTTCAGGGCGAGCGGAGTTTGATGCAATGGATTGAATTGATCGGAGAAGCTTTGTCTACTGCGTTTCCTGTTTGGGTGGCGCTAGGTTGCGTTTTAGGGCTGCTCAGACCGGCTTCCTATGCTTGGGTTCAACCGAGATGGACTGTTCTTGGCATTACTCTCACAATGCTTGGTATGGGCATGACATTGACCCTCGACGATCTTCGTGGAGCCCTGGCTATGCCTAAGGAATTGATTTCTGGGTTCGTGCTCCAGTATTCGGTTAGTTCGTTTGTTTACTGCGATTGTGCTATTGTTTGAACGTATCTGAAATTCATTGATTTTTTTGATCTTGAGAAATTTCTCGCGTATGCTGCATAATTTTGAATGTGTGTGACTTGGGTTTTGGAATATTGGAAGCTGTTCTAGTTCACAGAAAGAGGGAAAGGAACAACAGAAATGACTATGGCCATCAGAAATGTTCCAAATCTCGCAACGGGTGTTGATGGTGAATCATAGCGAGATGAAGAATTACTATTACGAGCTAAATGGATGATTGATTCTGAAGAGTTACTATTACGAGCTAAATGGATGATTGATTCTGAAGAATTACTATTACGAGCTAAATGGATGATTGATTCTGAAGAGTTACTATTACGAGCTAAATGGATGATTGATTCTGAAGAATTACTATTACGAGCTAAATGGATGATTGATTCTTCATCTTTAATATTTCACTACTTTTTTTGAATTGTATGTTAACTGTGTTCCGAAAAGCATTTCGTTTGGATGAAATCCTTCTATTATTGATCTACTGGTTAGATTTTTCTGAGTTTGTACTGAAGGAAACAATTGATAAAAAATAGTGTGACATCGAGGATTTCCACTTCACTTTCTTTGATAGTTTTAGGGACTTCAATCTATAGATGAAATTATAAGATAGACTTTCATGGTTCTTGGTGCAGGTGATGCCAATATCAGGCTTTCTTGTCAGCAAGCTTTTAAATTTGCCATCTTACTATGCAGCTGGTTTAATATTGGTTGGTTGCTGTCCTGGTGGTATGCATCAGTTGGTAGTGTCAATTATCTTTCTCATTCTATTTATTTTAACAGTTTGATCTATCTTTGGTTTCAGGAACAGCAAGCAATATAGTCACTTACATTGCAAGGTATTCTAACTTTTGAAATGCCACCATTTAGCTTCTTTCTTGTTAAATTATGTTAGAGGTTAAGAAAATTTTTATGCCTTTCCAGGGGAAATGTAGCTCTTTCTGTGCTGATGACCGCCACAAGCACTATGGCAGCCGTGGTTAGCAAGCCTCCATAGTGCTTTTGCTTTTTTCGTTTGTTTAGTTTCTAAATTCAAGTTTGCATCTTAGCATGATCTGTTTTTCTTTCGGTTTTATATAGTTCTTCTGTCGTTAAAACAGGACCTAATATCTTTGTTAGTAGAAATGACAACACATAAGAAACCATAGTTTACTCCTAAGTTCATATTTGCACAAACATAGGAAAAACCTTTAACTGAACACAACAATAAATTTTTTATCTACCACGTTACTTTTTTTTTCTCTTCAAAGATATTCGGTTTGATGAGTGTTTACTGTAGAGATGTCAGTGCTATGAGTGAGGAGTCCCTCCTTAATCCGCCTTTTGGGGAGAAAGCCCGGTTTATTTGGCTTGTTGGTGTGTGTGCAGTGTTATGGGTTTTGTGGGATGTGAGGAACAGTGGAGTGTCTGGGGGAGTGGAGAGAAACCCTAGGGAGCTTTGGTCCCTCGTTCGTTTTCATGTTTTTCTCTAGGCTTCAATTTCGTAGATTTTTGGTAATTATTCTATAGGAATGATTTTGCATAGTTGGAGCCCGTTCTTGTAGAGGGCATCTCTCCTTTTTGTGGGCTTTGTTTCCTTAGAACTGTGCATTTTTTCCTTTTTCTCAATGGAAGTGATTATTTTCGAAGTTTCATAGATATTGAAATCTAAGTTATCATTTCAATTTTACAGATCATGACCCCTTTTCTCACTGCCAAACTTGCTGGTCAATTTGTTGCTGTGGACGCAGCTGGGTTGTTAATGTCCACCCTGCAGGTGCGATTTCTAACAAACGAAAGCAACATCAATATTTTTCTTAACATTAAATTTCTCTCAAGTAACTTCCCTTTCCTTCACATACAACAGATTGTGCTTCTTCCAGTGTTGGGTGGGGCATTTTTAAACCAGTATTTCCATGGGTTGGTTAGATTTGTCTCTCCATTCATGCCCCCTATTGCTGTTGGCACTGTTGCTATTTTATGTGGACATGCAATTGCTCAGAGCTCCTCTGCTATTCGGATGTCTGGTCAGCAAGTAGTCCTGGCTGCAGCTCTTCTTCATGCTTCAGGATTTTTCTTCGGTTATGTACTTGCAAGATTGCTTGGCATTGACATTGCATCTTCTCGAACGATCTCCATTGAAGTTGGAATGCAGGTAAAGCATTTCATTTAGAATAATTGCAATGGATAGTACTTTTATGATAAATAATTAAACGCATAGCAATGTGTTAAAAGAATTTTAAATATGGGGAAAATCTATTAATGACAAACATTTATTAGAAATATGGACTATGGTAGACTTTGAGAATTGATTCAAGATTGCATTATATTTGTAAATTGTTTTGTATTGTGCTACATTTATTCATATTTGGGTCTGATCGCTGTTTTTGCAACTATCCCTTTCATTTACTTTCGGGGTATCTTAGTTGCACTCTTTGGCAAGTCTGCTGCCAAGTGTCTTACTACATAACTCAATCAGTTTCGGCATTTTTAGGTTGATCTGGTTTTTAACTTTTAACAATGAATAAATTTATGTGACAGAACTCGGTGCTAGGGGTTGTTCTTGCTAGCCAGCACTTTGGAAATCCTCTTACGGCAGTGCCCTGTGCAGTTTCAAGTGTTTGCCACTCAATCTTTGGCAGCGTTCTTGCTGGGATTTGGAGGCAAAGCAAAGACTAGGTGAAAATGATGTCTAAATTTTGTAAGCATCATTTGTGTTTTATCCTTTTGGTTTAGTAGATTTTTGTAACATTTGAATAGTTCTTGACAGGTTGTTTGCAATCATTCCATGTTTGAACTTTGTCTAATCTTGTTTTAGAATAAATCTTAAATTGTTTTTTTCCAATAAAAATAAATTTAAT

Coding sequence (CDS)

ATGCAGTCTCTTCCATCAGATACTTGCGTTCTTCGTCCTTATCGATATTCCCTTTCGACCTTCAGACCTCGCACTTCACTTGTAACTTCCTCTTCTTCTTCTTTTAACATCCCTCTCAATTCGTCTTTGTCCTCTTTTTCTCTGGTTGGGTTACGTCGTGAATCTCCTCTACTGTTATTCGGCGATCCAATTTGGAACGGGAACCCTTTTGTTTGCTCCCAAACCAAACGGAGGGATTTTGGATTGTTAGTTCCTCCTCTTCGATGCGAACCGTCATCGAACGGCAACAGCGTTCAGGGCGAGCGGAGTTTGATGCAATGGATTGAATTGATCGGAGAAGCTTTGTCTACTGCGTTTCCTGTTTGGGTGGCGCTAGGTTGCGTTTTAGGGCTGCTCAGACCGGCTTCCTATGCTTGGGTTCAACCGAGATGGACTGTTCTTGGCATTACTCTCACAATGCTTGGTATGGGCATGACATTGACCCTCGACGATCTTCGTGGAGCCCTGGCTATGCCTAAGGAATTGATTTCTGGGTTCGTGCTCCAGTATTCGGTGATGCCAATATCAGGCTTTCTTGTCAGCAAGCTTTTAAATTTGCCATCTTACTATGCAGCTGGTTTAATATTGGAACAGCAAGCAATATAG

Protein sequence

MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLFGDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFPVWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFVLQYSVMPISGFLVSKLLNLPSYYAAGLILEQQAI

Homology

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BLAST of Cucsat.G8906.T10 vs. ExPASy Swiss-Prot
Match: Q93YR2 (Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BASS1 PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.7e-45
Identity = 89/141 (63.12%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 69  PFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFPVWVALGCV 128
           P  C ++ R DF   VP  RC  SSN    + ++S  +W+E +GEA+STAFP+WV+LGC+
Sbjct: 57  PISCRRS-RFDF---VP--RCGISSNDLPTEKKKSFGEWVEFVGEAVSTAFPIWVSLGCL 116

Query: 129 LGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFVLQYSVMPI 188
           LGL+RP+++ WV P WT++G+T+TMLGMGMTLTLDDLRGAL+MPKEL +GF+LQYSVMP+
Sbjct: 117 LGLMRPSTFNWVTPNWTIVGLTITMLGMGMTLTLDDLRGALSMPKELFAGFLLQYSVMPL 176

Query: 189 SGFLVSKLLNLPSYYAAGLIL 210
           S F VSKLLNLP +YAAGLIL
Sbjct: 177 SAFFVSKLLNLPPHYAAGLIL 191

[Close]

BLAST of Cucsat.G8906.T10 vs. ExPASy Swiss-Prot
Match: Q7XVB3 (Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=BASS1 PE=2 SV=2)

HSP 1 Score: 149.4 bits (376), Expect = 4.5e-35
Identity = 78/137 (56.93%), Postives = 96/137 (70.07%), Query Frame = 0


Query: 84  VPPLRCEPSSN--------GNSVQGERSLMQWIEL---IGEALSTAFPVWVALGCVLGLL 143
           +P  RC  +++        G S   E  ++ W +L   +GE LS  FPVWVA  C + L 
Sbjct: 60  IPSSRCHAAADPAPSKIPGGGSGALEAGVVGWRDLLLQVGEVLSLGFPVWVASACAVALW 119

Query: 144 RPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFVLQYSVMPISGFL 203
           RP ++ WV P   ++GI+ TMLGMGMTLTLDDL+ AL MPKEL SGF+LQYSVMP+SGFL
Sbjct: 120 RPPAFLWVSPMAQIVGISFTMLGMGMTLTLDDLKTALLMPKELASGFLLQYSVMPLSGFL 179

Query: 204 VSKLLNLPSYYAAGLIL 210
           +SKLLNLPSYYAAGLIL
Sbjct: 180 ISKLLNLPSYYAAGLIL 196

[Close]

BLAST of Cucsat.G8906.T10 vs. ExPASy Swiss-Prot
Match: Q1EBV7 (Sodium/pyruvate cotransporter BASS2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BASS2 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.0e-15
Identity = 44/108 (40.74%), Postives = 66/108 (61.11%), Query Frame = 0


Query: 102 RSLMQWIELIGEALSTAFPVWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLT 161
           + L Q+ ++I E L+T FP+WV LG ++G+ +P+   W++     LG+   ML MG+TLT
Sbjct: 89  KELSQYEKII-ELLTTLFPLWVILGTLVGIFKPSLVTWLETDLFTLGLGFLMLSMGLTLT 148

Query: 162 LDDLRGALAMPKELISGFVLQYSVMPISGFLVSKLLNLPSYYAAGLIL 210
            +D R  L  P  +  GF+ QY + PI GFL++  L L +  A GLIL
Sbjct: 149 FEDFRRCLRNPWTVGVGFLAQYMIKPILGFLIAMTLKLSAPLATGLIL 195

[Close]

BLAST of Cucsat.G8906.T10 vs. ExPASy Swiss-Prot
Match: Q5VRB2 (Probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=BASS2 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-14
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 88  RCEPSSNGNSVQGERSLMQWIELIGEALSTAFPVWVALGCVLGLLRPASYAWVQPRWTVL 147
           + E + + N  +   S     E I E L+T FPVWV LG ++G+ +P+   W++     +
Sbjct: 83  KAEANISSNLPESIPSEANQYEKIVELLTTLFPVWVILGTIIGIYKPSMVTWLETDLFTV 142

Query: 148 GITLTMLGMGMTLTLDDLRGALAMPKELISGFVLQYSVMPISGFLVSKLLNLPSYYAAGL 207
           G+   ML MG+TLT +D R  +  P  +  GF+ QY + P+ GF ++  L L +  A GL
Sbjct: 143 GLGFLMLSMGLTLTFEDFRRCMRNPWTVGVGFLAQYLIKPMLGFAIAMTLKLSAPLATGL 202

Query: 208 IL 210
           IL
Sbjct: 203 IL 204

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BLAST of Cucsat.G8906.T10 vs. ExPASy Swiss-Prot
Match: Q8ZKL0 (Pantothenate precursors transporter PanS OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=panS PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-07
Identity = 30/95 (31.58%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 115 LSTAFPVWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKE 174
           ++  FP+W  L  +     P+++  V P W    + L M GMG+ L +DD +  L+ P  
Sbjct: 5   ITRLFPLWALLLSLTAYYTPSTFTPVGP-WVATLLMLIMFGMGVHLNVDDFKRVLSRPAP 64

Query: 175 LISGFVLQYSVMPISGFLVSKLLNLPSYYAAGLIL 210
           + +G  L Y VMP++ +L++ L  +P   +AG++L
Sbjct: 65  VAAGIFLHYLVMPLAAWLLALLFKMPPDLSAGMVL 98

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BLAST of Cucsat.G8906.T10 vs. NCBI nr
Match: XP_004146013.1 (probable sodium/metabolite cotransporter BASS1, chloroplastic [Cucumis sativus] >KGN55025.1 hypothetical protein Csa_012383 [Cucumis sativus])

HSP 1 Score: 414 bits (1064), Expect = 1.38e-142
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF 60
           MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF
Sbjct: 1   MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF 60

Query: 61  GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP 120
           GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP
Sbjct: 61  GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP 120

Query: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180
           VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV
Sbjct: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180

Query: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLIL 209
           LQYSVMPISGFLVSKLLNLPSYYAAGLIL
Sbjct: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLIL 209

[Close]

BLAST of Cucsat.G8906.T10 vs. NCBI nr
Match: XP_008463794.1 (PREDICTED: LOW QUALITY PROTEIN: probable sodium/metabolite cotransporter BASS1, chloroplastic [Cucumis melo] >TYK27850.1 putative sodium/metabolite cotransporter BASS1 [Cucumis melo var. makuwa])

HSP 1 Score: 389 bits (998), Expect = 1.37e-132
Identity = 200/209 (95.69%), Postives = 201/209 (96.17%), Query Frame = 0


Query: 1   MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF 60
           MQSLPSDTCVLRPYRYSLSTF PRTSLVTSSSS  N PLNSSLSSFSLVGLRRES LLLF
Sbjct: 1   MQSLPSDTCVLRPYRYSLSTFTPRTSLVTSSSS--NNPLNSSLSSFSLVGLRRESSLLLF 60

Query: 61  GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP 120
           GD IWN NPFVCSQTKR DFGLLVPPLRCEPSSNGNS+QGERSLMQWIELIGEALSTAFP
Sbjct: 61  GDRIWNRNPFVCSQTKRNDFGLLVPPLRCEPSSNGNSIQGERSLMQWIELIGEALSTAFP 120

Query: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180
           VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV
Sbjct: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180

Query: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLIL 209
           LQYSVMPISGFLVSKLLNLPSYYAAGLIL
Sbjct: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLIL 207

[Close]

BLAST of Cucsat.G8906.T10 vs. NCBI nr
Match: KAA0066700.1 (putative sodium/metabolite cotransporter BASS1 [Cucumis melo var. makuwa])

HSP 1 Score: 389 bits (998), Expect = 1.46e-132
Identity = 200/209 (95.69%), Postives = 201/209 (96.17%), Query Frame = 0


Query: 1   MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF 60
           MQSLPSDTCVLRPYRYSLSTF PRTSLVTSSSS  N PLNSSLSSFSLVGLRRES LLLF
Sbjct: 1   MQSLPSDTCVLRPYRYSLSTFTPRTSLVTSSSS--NNPLNSSLSSFSLVGLRRESSLLLF 60

Query: 61  GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP 120
           GD IWN NPFVCSQTKR DFGLLVPPLRCEPSSNGNS+QGERSLMQWIELIGEALSTAFP
Sbjct: 61  GDRIWNRNPFVCSQTKRNDFGLLVPPLRCEPSSNGNSIQGERSLMQWIELIGEALSTAFP 120

Query: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180
           VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV
Sbjct: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180

Query: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLIL 209
           LQYSVMPISGFLVSKLLNLPSYYAAGLIL
Sbjct: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLIL 207

[Close]

BLAST of Cucsat.G8906.T10 vs. NCBI nr
Match: XP_038898003.1 (probable sodium/metabolite cotransporter BASS1, chloroplastic [Benincasa hispida])

HSP 1 Score: 330 bits (847), Expect = 1.25e-109
Identity = 177/213 (83.10%), Postives = 187/213 (87.79%), Query Frame = 0


Query: 1   MQSLPSDTCVLRPY----RYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESP 60
           MQSLPSDT VLRP+    RYSLS+FR RTSLVTSS+S  N PL SSLSS S  G  RES 
Sbjct: 1   MQSLPSDTFVLRPHIQSHRYSLSSFRRRTSLVTSSTS--NNPLPSSLSSSSPAGFHRESS 60

Query: 61  LLLFGDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALS 120
           L LF + IW+ N F CS+TKR D GLLVPPLRCE SSNGNSVQGERSLMQWIEL+GEALS
Sbjct: 61  LRLFNERIWSRNAFFCSKTKRIDVGLLVPPLRCEASSNGNSVQGERSLMQWIELLGEALS 120

Query: 121 TAFPVWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELI 180
           TAFPVWVALGC+LGLLRPASYAWVQP WTVLGITLTMLGMGMTLTL+DLRGALAMPKELI
Sbjct: 121 TAFPVWVALGCLLGLLRPASYAWVQPGWTVLGITLTMLGMGMTLTLEDLRGALAMPKELI 180

Query: 181 SGFVLQYSVMPISGFLVSKLLNLPSYYAAGLIL 209
           SGF+LQYSVMPISGFLVSKLLNLPSYYAAGLIL
Sbjct: 181 SGFLLQYSVMPISGFLVSKLLNLPSYYAAGLIL 211

[Close]

BLAST of Cucsat.G8906.T10 vs. NCBI nr
Match: XP_022982182.1 (probable sodium/metabolite cotransporter BASS1, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 291 bits (746), Expect = 5.31e-95
Identity = 156/215 (72.56%), Postives = 175/215 (81.40%), Query Frame = 0


Query: 1   MQSLPSDTCVLRPYRY----SLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESP 60
           M+SLP DTCVLRP+      SLS+F PRTSL+TSS+S      N+  SS S     R + 
Sbjct: 1   MRSLPLDTCVLRPHIQPPPRSLSSFSPRTSLLTSSTS------NNRFSSASAATFHRNAS 60

Query: 61  LLLFGDPI--WNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEA 120
           L +F + I  WN NP +CS+TKR D GLLVPPL+C  SS+ N VQ ERSLMQWIELIGEA
Sbjct: 61  LQIFNERISVWNRNPLLCSKTKRIDVGLLVPPLQCGSSSDTNGVQSERSLMQWIELIGEA 120

Query: 121 LSTAFPVWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKE 180
           LSTAFPVWVALGC+LGLLRPA Y WVQPRWTVLG+T+TMLGMGMTLTLDDLRGALAMPKE
Sbjct: 121 LSTAFPVWVALGCLLGLLRPAYYDWVQPRWTVLGLTVTMLGMGMTLTLDDLRGALAMPKE 180

Query: 181 LISGFVLQYSVMPISGFLVSKLLNLPSYYAAGLIL 209
           LISGF+LQYSVMPISG++VSKLLNLPSYYAAGLIL
Sbjct: 181 LISGFLLQYSVMPISGYVVSKLLNLPSYYAAGLIL 209

[Close]

BLAST of Cucsat.G8906.T10 vs. ExPASy TrEMBL
Match: A0A0A0KZF9 (Sodium-bile acid cotransporter OS=Cucumis sativus OX=3659 GN=Csa_4G622840 PE=3 SV=1)

HSP 1 Score: 414 bits (1064), Expect = 6.67e-143
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF 60
           MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF
Sbjct: 1   MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF 60

Query: 61  GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP 120
           GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP
Sbjct: 61  GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP 120

Query: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180
           VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV
Sbjct: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180

Query: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLIL 209
           LQYSVMPISGFLVSKLLNLPSYYAAGLIL
Sbjct: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLIL 209

[Close]

BLAST of Cucsat.G8906.T10 vs. ExPASy TrEMBL
Match: A0A5D3DX81 (Putative sodium/metabolite cotransporter BASS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00270 PE=3 SV=1)

HSP 1 Score: 389 bits (998), Expect = 6.62e-133
Identity = 200/209 (95.69%), Postives = 201/209 (96.17%), Query Frame = 0


Query: 1   MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF 60
           MQSLPSDTCVLRPYRYSLSTF PRTSLVTSSSS  N PLNSSLSSFSLVGLRRES LLLF
Sbjct: 1   MQSLPSDTCVLRPYRYSLSTFTPRTSLVTSSSS--NNPLNSSLSSFSLVGLRRESSLLLF 60

Query: 61  GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP 120
           GD IWN NPFVCSQTKR DFGLLVPPLRCEPSSNGNS+QGERSLMQWIELIGEALSTAFP
Sbjct: 61  GDRIWNRNPFVCSQTKRNDFGLLVPPLRCEPSSNGNSIQGERSLMQWIELIGEALSTAFP 120

Query: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180
           VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV
Sbjct: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180

Query: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLIL 209
           LQYSVMPISGFLVSKLLNLPSYYAAGLIL
Sbjct: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLIL 207

[Close]

BLAST of Cucsat.G8906.T10 vs. ExPASy TrEMBL
Match: A0A1S3CK43 (LOW QUALITY PROTEIN: probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501847 PE=3 SV=1)

HSP 1 Score: 389 bits (998), Expect = 6.62e-133
Identity = 200/209 (95.69%), Postives = 201/209 (96.17%), Query Frame = 0


Query: 1   MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF 60
           MQSLPSDTCVLRPYRYSLSTF PRTSLVTSSSS  N PLNSSLSSFSLVGLRRES LLLF
Sbjct: 1   MQSLPSDTCVLRPYRYSLSTFTPRTSLVTSSSS--NNPLNSSLSSFSLVGLRRESSLLLF 60

Query: 61  GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP 120
           GD IWN NPFVCSQTKR DFGLLVPPLRCEPSSNGNS+QGERSLMQWIELIGEALSTAFP
Sbjct: 61  GDRIWNRNPFVCSQTKRNDFGLLVPPLRCEPSSNGNSIQGERSLMQWIELIGEALSTAFP 120

Query: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180
           VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV
Sbjct: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180

Query: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLIL 209
           LQYSVMPISGFLVSKLLNLPSYYAAGLIL
Sbjct: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLIL 207

[Close]

BLAST of Cucsat.G8906.T10 vs. ExPASy TrEMBL
Match: A0A5A7VHN1 (Putative sodium/metabolite cotransporter BASS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G00330 PE=3 SV=1)

HSP 1 Score: 389 bits (998), Expect = 7.08e-133
Identity = 200/209 (95.69%), Postives = 201/209 (96.17%), Query Frame = 0


Query: 1   MQSLPSDTCVLRPYRYSLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESPLLLF 60
           MQSLPSDTCVLRPYRYSLSTF PRTSLVTSSSS  N PLNSSLSSFSLVGLRRES LLLF
Sbjct: 1   MQSLPSDTCVLRPYRYSLSTFTPRTSLVTSSSS--NNPLNSSLSSFSLVGLRRESSLLLF 60

Query: 61  GDPIWNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALSTAFP 120
           GD IWN NPFVCSQTKR DFGLLVPPLRCEPSSNGNS+QGERSLMQWIELIGEALSTAFP
Sbjct: 61  GDRIWNRNPFVCSQTKRNDFGLLVPPLRCEPSSNGNSIQGERSLMQWIELIGEALSTAFP 120

Query: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180
           VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV
Sbjct: 121 VWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELISGFV 180

Query: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLIL 209
           LQYSVMPISGFLVSKLLNLPSYYAAGLIL
Sbjct: 181 LQYSVMPISGFLVSKLLNLPSYYAAGLIL 207

[Close]

BLAST of Cucsat.G8906.T10 vs. ExPASy TrEMBL
Match: A0A6J1IVZ2 (probable sodium/metabolite cotransporter BASS1, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481085 PE=3 SV=1)

HSP 1 Score: 291 bits (746), Expect = 2.57e-95
Identity = 156/215 (72.56%), Postives = 175/215 (81.40%), Query Frame = 0


Query: 1   MQSLPSDTCVLRPYRY----SLSTFRPRTSLVTSSSSSFNIPLNSSLSSFSLVGLRRESP 60
           M+SLP DTCVLRP+      SLS+F PRTSL+TSS+S      N+  SS S     R + 
Sbjct: 1   MRSLPLDTCVLRPHIQPPPRSLSSFSPRTSLLTSSTS------NNRFSSASAATFHRNAS 60

Query: 61  LLLFGDPI--WNGNPFVCSQTKRRDFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEA 120
           L +F + I  WN NP +CS+TKR D GLLVPPL+C  SS+ N VQ ERSLMQWIELIGEA
Sbjct: 61  LQIFNERISVWNRNPLLCSKTKRIDVGLLVPPLQCGSSSDTNGVQSERSLMQWIELIGEA 120

Query: 121 LSTAFPVWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKE 180
           LSTAFPVWVALGC+LGLLRPA Y WVQPRWTVLG+T+TMLGMGMTLTLDDLRGALAMPKE
Sbjct: 121 LSTAFPVWVALGCLLGLLRPAYYDWVQPRWTVLGLTVTMLGMGMTLTLDDLRGALAMPKE 180

Query: 181 LISGFVLQYSVMPISGFLVSKLLNLPSYYAAGLIL 209
           LISGF+LQYSVMPISG++VSKLLNLPSYYAAGLIL
Sbjct: 181 LISGFLLQYSVMPISGYVVSKLLNLPSYYAAGLIL 209

The following BLAST results are available for this feature:

BLAST of Cucsat.G8906.T10 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93YR2	3.7e-45	63.12	Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Arabidopsis tha...	[more]
Q7XVB3	4.5e-35	56.93	Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Oryza sativa su...	[more]
Q1EBV7	4.0e-15	40.74	Sodium/pyruvate cotransporter BASS2, chloroplastic OS=Arabidopsis thaliana OX=37...	[more]
Q5VRB2	1.5e-14	35.25	Probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Oryza sativa su...	[more]
Q8ZKL0	1.0e-07	31.58	Pantothenate precursors transporter PanS OS=Salmonella typhimurium (strain LT2 /...	[more]

BLAST of Cucsat.G8906.T10 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146013.1	1.38e-142	100.00	probable sodium/metabolite cotransporter BASS1, chloroplastic [Cucumis sativus] ...	[more]
XP_008463794.1	1.37e-132	95.69	PREDICTED: LOW QUALITY PROTEIN: probable sodium/metabolite cotransporter BASS1, ...	[more]
KAA0066700.1	1.46e-132	95.69	putative sodium/metabolite cotransporter BASS1 [Cucumis melo var. makuwa]	[more]
XP_038898003.1	1.25e-109	83.10	probable sodium/metabolite cotransporter BASS1, chloroplastic [Benincasa hispida...	[more]
XP_022982182.1	5.31e-95	72.56	probable sodium/metabolite cotransporter BASS1, chloroplastic isoform X2 [Cucurb...	[more]

BLAST of Cucsat.G8906.T10 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZF9	6.67e-143	100.00	Sodium-bile acid cotransporter OS=Cucumis sativus OX=3659 GN=Csa_4G622840 PE=3 S...	[more]
A0A5D3DX81	6.62e-133	95.69	Putative sodium/metabolite cotransporter BASS1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3CK43	6.62e-133	95.69	LOW QUALITY PROTEIN: probable sodium/metabolite cotransporter BASS1, chloroplast...	[more]
A0A5A7VHN1	7.08e-133	95.69	Putative sodium/metabolite cotransporter BASS1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1IVZ2	2.57e-95	72.56	probable sodium/metabolite cotransporter BASS1, chloroplastic isoform X2 OS=Cucu...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002657	Bile acid:sodium symporter/arsenical resistance protein Acr3	PFAM	PF01758	SBF	coord: 147..209 e-value: 2.3E-11 score: 43.7
IPR038770	Sodium/solute symporter superfamily	GENE3D	1.20.1530.20		coord: 102..210 e-value: 1.2E-21 score: 79.0
None	No IPR available	PANTHER	PTHR10361:SF64	SODIUM/METABOLITE COTRANSPORTER BASS1, CHLOROPLASTIC-RELATED	coord: 85..209
IPR004710	Bile acid:sodium symporter	PANTHER	PTHR10361	SODIUM-BILE ACID COTRANSPORTER	coord: 85..209

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G8906	Cucsat.G8906	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G8906.T10.E1	Cucsat.G8906.T10.E1	exon
Cucsat.G8906.T10.E2	Cucsat.G8906.T10.E2	exon
Cucsat.G8906.T10.E3	Cucsat.G8906.T10.E3	exon
Cucsat.G8906.T10.E4	Cucsat.G8906.T10.E4	exon
Cucsat.G8906.T10.E5	Cucsat.G8906.T10.E5	exon
Cucsat.G8906.T10.E6	Cucsat.G8906.T10.E6	exon
Cucsat.G8906.T10.E7	Cucsat.G8906.T10.E7	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G8906.T10.C3	Cucsat.G8906.T10.C3	CDS
Cucsat.G8906.T10.C2	Cucsat.G8906.T10.C2	CDS
Cucsat.G8906.T10.C1	Cucsat.G8906.T10.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G8906.T10	Cucsat.G8906.T10-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098717	pantothenate import across plasma membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane